FC917080
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DRS1_PICST (ATP-dependent RNA helicase DRS1 OS=Pichia stipitis GN=DRS1 PE=3 SV=3) HSP 1 Score: 133.265 bits (334), Expect = 1.846e-30 Identity = 69/168 (41.07%), Postives = 109/168 (64.88%), Query Frame = 1 Query: 388 SLNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPAN--GTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885 +L LS + LG+T + +Q+ +IP L GRD++ A TGSGKT A++IP IE L +KP+ T +I+LTPTRELA+Q+ + + + ++ G+ +GG N + + +L ++++ATPGRL+DH+RN+ SF +L+ LVIDEADR+L+ GF+ E+ Sbjct: 226 TLQLSRPVLKGLSQLGYTKPSPIQSASIPIALLGRDIVAGAVTGSGKTAAYMIPIIE---RLLYKPSKVASTRVIVLTPTRELAIQVGDVGKKIGQFVNNLNFGLAVGGLNLRQQEQQLKSRPDVVIATPGRLIDHIRNSPSFSIDSLEVLVIDEADRMLDEGFQVEL 390
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DRS1_CANGA (ATP-dependent RNA helicase DRS1 OS=Candida glabrata GN=DRS1 PE=3 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 1.846e-30 Identity = 70/167 (41.92%), Postives = 106/167 (63.47%), Query Frame = 1 Query: 391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPAN--GTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885 L LS + LG+ + +Q+ TIP L G+D++ A TGSGKT AF+IP IE L +KPA T +I+LTPTRELA+Q+ + + + + T G+ +GG N + + L ++++ATPGR +DH+RN+ SF +++ LVIDEADR+LE GF++E+ Sbjct: 211 LALSRPVMKGLSNLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIE---RLLYKPAKVASTRVIVLTPTRELAIQVADVGKKIGQFVSNLTFGLAVGGLNLRQQEQMLKTRPDIVIATPGRFIDHIRNSASFNVDSVEVLVIDEADRMLEDGFQDEL 374
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DDX27_DICDI (Probable ATP-dependent RNA helicase ddx27 OS=Dictyostelium discoideum GN=ddx27 PE=3 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 1.846e-30 Identity = 70/165 (42.42%), Postives = 109/165 (66.06%), Query Frame = 1 Query: 391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885 L+LS A+ LGF+ T +QA+ IP L+G+D+L +A TGSGKT AFL+P +E L + ++IL PTRELALQ S++ +L F + TS +++GG + K++ L K ++++ATPGRL+DHL N +L+ L++DEADR+L++GF++E+ Sbjct: 195 LHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLERL-LFRDSEYRAIRVLILLPTRELALQCQSVMENL-AQFSNITSCLIVGGLSNKAQEVELRKSPDVVIATPGRLIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEI 357
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DBP4_PICST (ATP-dependent RNA helicase DBP4 OS=Pichia stipitis GN=DBP4 PE=3 SV=2) HSP 1 Score: 133.265 bits (334), Expect = 1.846e-30 Identity = 67/165 (40.61%), Postives = 111/165 (67.27%), Query Frame = 1 Query: 391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885 L ++ +T ++ F S+T++Q +TIP L G D++G ARTGSGKTLAFLIP +E L K +G +I++PTRELA+Q F ++ + G +++ ++G+V GG + + E +R+++ +N++V TPGR+ HL NL+ LV+DEADR L++GF++++ Sbjct: 52 LPITQETLRGLNESSFMSLTDIQKKTIPIALKGEDLMGTARTGSGKTLAFLIPVVESLIRNKITEHDGLAALIVSPTRELAVQTFEVLTKI-GKYNTFSAGLVTGGKDVQYEKERVSR-MNILVGTPGRISQHLNEAVGMETSNLQVLVLDEADRCLDMGFKKQI 214
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DRS1_YEAST (ATP-dependent RNA helicase DRS1 OS=Saccharomyces cerevisiae GN=DRS1 PE=1 SV=2) HSP 1 Score: 132.88 bits (333), Expect = 2.411e-30 Identity = 69/168 (41.07%), Postives = 107/168 (63.69%), Query Frame = 1 Query: 388 SLNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPAN--GTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885 SL+LS + +LG+ + +Q+ TIP L G+D++ A TGSGKT AF+IP IE L +KPA T +I+L PTRELA+Q+ + + + T G+ +GG N + + L ++++ATPGR +DH+RN+ SF +++ LV+DEADR+LE GF++E+ Sbjct: 235 SLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIE---RLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDEL 399
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DRS1_YEAS7 (ATP-dependent RNA helicase DRS1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DRS1 PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 2.411e-30 Identity = 69/168 (41.07%), Postives = 107/168 (63.69%), Query Frame = 1 Query: 388 SLNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPAN--GTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885 SL+LS + +LG+ + +Q+ TIP L G+D++ A TGSGKT AF+IP IE L +KPA T +I+L PTRELA+Q+ + + + T G+ +GG N + + L ++++ATPGR +DH+RN+ SF +++ LV+DEADR+LE GF++E+ Sbjct: 237 SLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIE---RLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDEL 401
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DRS1_DEBHA (ATP-dependent RNA helicase DRS1 OS=Debaryomyces hansenii GN=DRS1 PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 2.411e-30 Identity = 69/168 (41.07%), Postives = 108/168 (64.29%), Query Frame = 1 Query: 388 SLNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPA--NGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885 SL LS + LG+T + +Q+ IP L G+D++ A TGSGKT A++IP IE L +KPA + T +I+L PTRELA+Q+ + + + ++ G+ +GG N + + +L ++++ATPGRL+DH+RN+ SF +L+ LVIDEADR+L+ GF+ E+ Sbjct: 262 SLQLSRPVLKGLSQLGYTKPSPIQSACIPIALLGKDIVAGAVTGSGKTAAYMIPIIE---RLLYKPAKISSTRVIVLAPTRELAIQVCDVGKKIGQFVNNLNFGLAVGGLNLRQQEQQLKTRPDIVIATPGRLIDHIRNSPSFSIDSLEVLVIDEADRMLDEGFQAEL 426
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DBP7_PICST (ATP-dependent RNA helicase DBP7 OS=Pichia stipitis GN=DPB7 PE=3 SV=2) HSP 1 Score: 132.88 bits (333), Expect = 2.411e-30 Identity = 71/156 (45.51%), Postives = 101/156 (64.74%), Query Frame = 1 Query: 424 DALGFTSMTEVQARTIPPLLSG-RDVLGAARTGSGKTLAFLIPSIEIL---STLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEE 879 + L F + T+VQ IP +LS RD+ A+TGSGKTL+FL+P L + K +G +ILTPTRELA QI+ ++ L +H G+V+GG +KSE R+ KGVN++V TPGRL DH+ NT+S L+ L++DE D+++E+GFEE Sbjct: 161 ETLRFKNPTKVQKSVIPTMLSTERDLFIKAQTGSGKTLSFLLPIFHKLMMENKHKINRDSGLFAVILTPTRELATQIYGVLETLTRCYHHIVPGIVIGGEKKKSEKARIRKGVNILVGTPGRLADHMENTESLDISQLRWLILDEGDKLVELGFEE 316
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: RRP3_AJECN (ATP-dependent rRNA helicase RRP3 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=RRP3 PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 3.149e-30 Identity = 78/152 (51.32%), Postives = 101/152 (66.45%), Query Frame = 1 Query: 418 AIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGF 873 A +ALG+ S T +QA +IP L GRD++G A TGSGKT AF +P IL L KP + G+I L PTRELA QI S + +G S V++GG + S+A L K ++IVATPGRLLDHL NTK F ++LK LV+DEADR+L++ F Sbjct: 73 ACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALP---ILQALMNKPQSLFGLI-LAPTRELACQI-SEAFEALGSLISVRCAVIVGGMDMVSQAISLGKKPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDF 219
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: RRP3_COCIM (ATP-dependent rRNA helicase RRP3 OS=Coccidioides immitis GN=RRP3 PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 4.113e-30 Identity = 76/152 (50.00%), Postives = 102/152 (67.11%), Query Frame = 1 Query: 418 AIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGF 873 A D+LG+ + T++QA +IP L GRD++G A TGSGKT AF +P IL L KP + G++ L PTRELA QI S + +G S V++GG + S+A L K ++IVATPGRLLDHL NTK F ++LK LV+DEADR+L++ F Sbjct: 62 ACDSLGYKAPTQIQAESIPLALQGRDLIGLAETGSGKTAAFALP---ILQALMDKPQSMFGLV-LAPTRELAYQI-SQQFEALGSLISVRCAVIVGGMDMVSQAIALGKKPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDF 208 The following BLAST results are available for this feature:
BLAST of FC917080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC917080 ID=FC917080; Name=FC917080; organism=Citrus clementina; type=EST; length=886bpback to top |