FC917080

Overview
NameFC917080
Unique NameFC917080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length886
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DRS1_PICST (ATP-dependent RNA helicase DRS1 OS=Pichia stipitis GN=DRS1 PE=3 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 1.846e-30
Identity = 69/168 (41.07%), Postives = 109/168 (64.88%), Query Frame = 1
Query:  388 SLNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPAN--GTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            +L LS      +  LG+T  + +Q+ +IP  L GRD++  A TGSGKT A++IP IE    L +KP+    T +I+LTPTRELA+Q+  + + +    ++   G+ +GG N + +  +L    ++++ATPGRL+DH+RN+ SF   +L+ LVIDEADR+L+ GF+ E+
Sbjct:  226 TLQLSRPVLKGLSQLGYTKPSPIQSASIPIALLGRDIVAGAVTGSGKTAAYMIPIIE---RLLYKPSKVASTRVIVLTPTRELAIQVGDVGKKIGQFVNNLNFGLAVGGLNLRQQEQQLKSRPDVVIATPGRLIDHIRNSPSFSIDSLEVLVIDEADRMLDEGFQVEL 390          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DRS1_CANGA (ATP-dependent RNA helicase DRS1 OS=Candida glabrata GN=DRS1 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.846e-30
Identity = 70/167 (41.92%), Postives = 106/167 (63.47%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPAN--GTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            L LS      +  LG+   + +Q+ TIP  L G+D++  A TGSGKT AF+IP IE    L +KPA    T +I+LTPTRELA+Q+  + + +     + T G+ +GG N + +   L    ++++ATPGR +DH+RN+ SF   +++ LVIDEADR+LE GF++E+
Sbjct:  211 LALSRPVMKGLSNLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIE---RLLYKPAKVASTRVIVLTPTRELAIQVADVGKKIGQFVSNLTFGLAVGGLNLRQQEQMLKTRPDIVIATPGRFIDHIRNSASFNVDSVEVLVIDEADRMLEDGFQDEL 374          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DDX27_DICDI (Probable ATP-dependent RNA helicase ddx27 OS=Dictyostelium discoideum GN=ddx27 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.846e-30
Identity = 70/165 (42.42%), Postives = 109/165 (66.06%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            L+LS     A+  LGF+  T +QA+ IP  L+G+D+L +A TGSGKT AFL+P +E L   +        ++IL PTRELALQ  S++ +L   F + TS +++GG + K++   L K  ++++ATPGRL+DHL N       +L+ L++DEADR+L++GF++E+
Sbjct:  195 LHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLERL-LFRDSEYRAIRVLILLPTRELALQCQSVMENL-AQFSNITSCLIVGGLSNKAQEVELRKSPDVVIATPGRLIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEI 357          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DBP4_PICST (ATP-dependent RNA helicase DBP4 OS=Pichia stipitis GN=DBP4 PE=3 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.846e-30
Identity = 67/165 (40.61%), Postives = 111/165 (67.27%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            L ++ +T   ++   F S+T++Q +TIP  L G D++G ARTGSGKTLAFLIP +E L   K    +G   +I++PTRELA+Q F ++  + G +++ ++G+V GG + + E +R+++ +N++V TPGR+  HL         NL+ LV+DEADR L++GF++++
Sbjct:   52 LPITQETLRGLNESSFMSLTDIQKKTIPIALKGEDLMGTARTGSGKTLAFLIPVVESLIRNKITEHDGLAALIVSPTRELAVQTFEVLTKI-GKYNTFSAGLVTGGKDVQYEKERVSR-MNILVGTPGRISQHLNEAVGMETSNLQVLVLDEADRCLDMGFKKQI 214          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DRS1_YEAST (ATP-dependent RNA helicase DRS1 OS=Saccharomyces cerevisiae GN=DRS1 PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 2.411e-30
Identity = 69/168 (41.07%), Postives = 107/168 (63.69%), Query Frame = 1
Query:  388 SLNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPAN--GTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            SL+LS      + +LG+   + +Q+ TIP  L G+D++  A TGSGKT AF+IP IE    L +KPA    T +I+L PTRELA+Q+  + + +       T G+ +GG N + +   L    ++++ATPGR +DH+RN+ SF   +++ LV+DEADR+LE GF++E+
Sbjct:  235 SLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIE---RLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDEL 399          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DRS1_YEAS7 (ATP-dependent RNA helicase DRS1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DRS1 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.411e-30
Identity = 69/168 (41.07%), Postives = 107/168 (63.69%), Query Frame = 1
Query:  388 SLNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPAN--GTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            SL+LS      + +LG+   + +Q+ TIP  L G+D++  A TGSGKT AF+IP IE    L +KPA    T +I+L PTRELA+Q+  + + +       T G+ +GG N + +   L    ++++ATPGR +DH+RN+ SF   +++ LV+DEADR+LE GF++E+
Sbjct:  237 SLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIE---RLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDEL 401          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DRS1_DEBHA (ATP-dependent RNA helicase DRS1 OS=Debaryomyces hansenii GN=DRS1 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.411e-30
Identity = 69/168 (41.07%), Postives = 108/168 (64.29%), Query Frame = 1
Query:  388 SLNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPA--NGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            SL LS      +  LG+T  + +Q+  IP  L G+D++  A TGSGKT A++IP IE    L +KPA  + T +I+L PTRELA+Q+  + + +    ++   G+ +GG N + +  +L    ++++ATPGRL+DH+RN+ SF   +L+ LVIDEADR+L+ GF+ E+
Sbjct:  262 SLQLSRPVLKGLSQLGYTKPSPIQSACIPIALLGKDIVAGAVTGSGKTAAYMIPIIE---RLLYKPAKISSTRVIVLAPTRELAIQVCDVGKKIGQFVNNLNFGLAVGGLNLRQQEQQLKTRPDIVIATPGRLIDHIRNSPSFSIDSLEVLVIDEADRMLDEGFQAEL 426          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DBP7_PICST (ATP-dependent RNA helicase DBP7 OS=Pichia stipitis GN=DPB7 PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 2.411e-30
Identity = 71/156 (45.51%), Postives = 101/156 (64.74%), Query Frame = 1
Query:  424 DALGFTSMTEVQARTIPPLLSG-RDVLGAARTGSGKTLAFLIPSIEIL---STLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEE 879
            + L F + T+VQ   IP +LS  RD+   A+TGSGKTL+FL+P    L   +  K    +G   +ILTPTRELA QI+ ++  L   +H    G+V+GG  +KSE  R+ KGVN++V TPGRL DH+ NT+S     L+ L++DE D+++E+GFEE
Sbjct:  161 ETLRFKNPTKVQKSVIPTMLSTERDLFIKAQTGSGKTLSFLLPIFHKLMMENKHKINRDSGLFAVILTPTRELATQIYGVLETLTRCYHHIVPGIVIGGEKKKSEKARIRKGVNILVGTPGRLADHMENTESLDISQLRWLILDEGDKLVELGFEE 316          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: RRP3_AJECN (ATP-dependent rRNA helicase RRP3 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=RRP3 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.149e-30
Identity = 78/152 (51.32%), Postives = 101/152 (66.45%), Query Frame = 1
Query:  418 AIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGF 873
            A +ALG+ S T +QA +IP  L GRD++G A TGSGKT AF +P   IL  L  KP +  G+I L PTRELA QI S   + +G   S    V++GG +  S+A  L K  ++IVATPGRLLDHL NTK F  ++LK LV+DEADR+L++ F
Sbjct:   73 ACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALP---ILQALMNKPQSLFGLI-LAPTRELACQI-SEAFEALGSLISVRCAVIVGGMDMVSQAISLGKKPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDF 219          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: RRP3_COCIM (ATP-dependent rRNA helicase RRP3 OS=Coccidioides immitis GN=RRP3 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.113e-30
Identity = 76/152 (50.00%), Postives = 102/152 (67.11%), Query Frame = 1
Query:  418 AIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGF 873
            A D+LG+ + T++QA +IP  L GRD++G A TGSGKT AF +P   IL  L  KP +  G++ L PTRELA QI S   + +G   S    V++GG +  S+A  L K  ++IVATPGRLLDHL NTK F  ++LK LV+DEADR+L++ F
Sbjct:   62 ACDSLGYKAPTQIQAESIPLALQGRDLIGLAETGSGKTAAFALP---ILQALMDKPQSMFGLV-LAPTRELAYQI-SQQFEALGSLISVRCAVIVGGMDMVSQAIALGKKPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDF 208          
The following BLAST results are available for this feature:
BLAST of FC917080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DRS1_PICST1.846e-3041.07ATP-dependent RNA helicase DRS1 OS=Pichia stipitis... [more]
DRS1_CANGA1.846e-3041.92ATP-dependent RNA helicase DRS1 OS=Candida glabrat... [more]
DDX27_DICDI1.846e-3042.42Probable ATP-dependent RNA helicase ddx27 OS=Dicty... [more]
DBP4_PICST1.846e-3040.61ATP-dependent RNA helicase DBP4 OS=Pichia stipitis... [more]
DRS1_YEAST2.411e-3041.07ATP-dependent RNA helicase DRS1 OS=Saccharomyces c... [more]
DRS1_YEAS72.411e-3041.07ATP-dependent RNA helicase DRS1 OS=Saccharomyces c... [more]
DRS1_DEBHA2.411e-3041.07ATP-dependent RNA helicase DRS1 OS=Debaryomyces ha... [more]
DBP7_PICST2.411e-3045.51ATP-dependent RNA helicase DBP7 OS=Pichia stipitis... [more]
RRP3_AJECN3.149e-3051.32ATP-dependent rRNA helicase RRP3 OS=Ajellomyces ca... [more]
RRP3_COCIM4.113e-3050.00ATP-dependent rRNA helicase RRP3 OS=Coccidioides i... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA71BH03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA71BH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917080 ID=FC917080; Name=FC917080; organism=Citrus clementina; type=EST; length=886bp
CATACCTTGACATCCCTCGTCATGACACCCGTAGCATCAACATCGGCTGT
TCAGCAAAAGAAACGCAAGAGGTCAAAGCACGGCGGGAGCACTGCCGTCG
CCTCGACCTCGACCTCGACCATAGAGGCGAGTCCGGTGAAAAAGGTCAAG
AGCAAGGGAGAGGGCAAGCAACGTCAAGCTGTTGCTGCCGAGGAGAAGGA
AGATGACGATGAGGATGCTGTCGAGGAGCAGGAAGAGTCTGCTGCCGGGC
CGTCTGGGGGACAAGCTATGGACACGACCCCAGCCTCTGCTCCTGTCTCT
GCCGAAGCTGGTCCTTCGACAACCTCGGCCGCATCGGACACACCTACTAC
CACCGCCGGAACGGCCCTGACCTCTCAAACTTTCACCTCCCTCAACCTCT
CTTCCCAAACTCAATCCGCCATCGACGCCCTCGGATTCACCTCGATGACA
GAAGTTCAAGCCCGGACCATCCCTCCTCTCCTCTCCGGACGTGACGTCCT
CGGTGCAGCCCGAACCGGATCCGGCAAGACCCTGGCTTTCCTGATCCCTT
CCATCGAAATCCTCAGTACTCTCAAGTTCAAACCGGCCAACGGGACGGGT
ATCATCATCCTCACGCCAACCAGGGAACTGGCCCTTCAGATCTTCTCCAT
CGTGAGGGATCTGATGGGTGGATTCCACAGTCAGACGTCTGGAGTAGTCA
TGGGCGGTGCGAATAGGAAATCCGAGGCGGATAGGTTGGCCAAGGGGGTC
AACCTGATCGTGGCTACTCCGGGGAGGTTGTTGGATCACTTGAGGAACAC
CAAATCCTTCGTTTTTCAGAATCTCAAAGCGCTCGTCATCGACGAGGCGG
ACCGGATCTTGGAAGTCGGGTTCGAGGAGGAAATGA
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