FC917080

Overview
NameFC917080
Unique NameFC917080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length886
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: RH32_ORYSJ (DEAD-box ATP-dependent RNA helicase 32 OS=Oryza sativa subsp. japonica GN=Os07g0517000 PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 4.113e-30
Identity = 69/166 (41.57%), Postives = 108/166 (65.06%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSF-VFQNLKALVIDEADRILEVGFEEEM 885
            L LS++T+  +   G+T M+E+Q   +P  L GRDVLGAA+TGSGKTLAF+IP +E L   ++ P +G G I+L+P ++LA QIF++ +  +G  H  ++  ++G      E   +   +N++V TPGRLL H+  T +F   Q  + LVIDEAD++L+  F+E++
Sbjct:   85 LPLSNKTKDGLRKAGYTEMSEIQRAALPHALCGRDVLGAAKTGSGKTLAFVIPVLEKLYRERWGPEDGVGCIVLSPNKDLAGQIFNVFQK-VGKLHGFSAACIVGNRKGLDEEKAVINNMNILVCTPGRLLQHMGETTNFDCSQIQQILVIDEADQVLDKNFQEQV 249          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DBP7_CANAL (ATP-dependent RNA helicase DBP7 OS=Candida albicans GN=DBP7 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.113e-30
Identity = 74/156 (47.44%), Postives = 102/156 (65.38%), Query Frame = 1
Query:  424 DALGFTSMTEVQARTIPPLLSGR-DVLGAARTGSGKTLAFLIPSI-EILSTLKFKPANGTGI--IILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEE 879
            D L F   T++Q   IP L+S   D+   A+TGSGKTLAF++P   +++   KFK    +G+  IILTPTRELA QI+ ++  L    H    G+V+GG  +KSE  RL KG N++VATPGRL DHL NTK+     L+ LV+DE D+++E+GFE+
Sbjct:  152 DHLRFMHPTKIQQLVIPSLISTENDLFVKAQTGSGKTLAFVLPIFHKLMRENKFKINRESGLFAIILTPTRELATQIYGVLETLTRCHHWIVPGIVIGGEKKKSEKARLRKGCNILVATPGRLADHLENTKTLDISQLRWLVLDEGDKLMELGFED 307          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DRS1_PHANO (ATP-dependent RNA helicase DRS1 OS=Phaeosphaeria nodorum GN=DRS1 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.372e-30
Identity = 71/168 (42.26%), Postives = 106/168 (63.10%), Query Frame = 1
Query:  388 SLNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPAN--GTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            +++LS   Q  + A+GFT  T +QA+ IP  + G+DV+G A TGSGKT AFLIP   IL  L ++P     T + I  PTRELA+Q F++   L   F   T  ++ GG + + +   L    ++++ATPGR +DH+ NT +F  ++L+ LV+DEADR+LE GFE ++
Sbjct:  289 AMSLSRPIQKGLAAIGFTEPTPIQAKAIPIAMQGKDVVGGAETGSGKTAAFLIP---ILERLLYRPKKVPTTRVAIFMPTRELAVQCFNVATKL-ASFTDITFALLAGGFSSREQEVMLKTRPDVVIATPGRFIDHMHNTAAFQVEHLEILVLDEADRMLEEGFETQL 452          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DBP4_ENCCU (ATP-dependent RNA helicase DBP4 OS=Encephalitozoon cuniculi GN=DBP4 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.372e-30
Identity = 64/163 (39.26%), Postives = 110/163 (67.48%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEE 879
            L +  + +  +   GF SM EVQ + IP  L G D++G+++TG+GKTLAFL+P+++ L +L +   +G G +++TPTRELALQIF ++   +  +   ++G++MGG   + E  ++ + +N++V TPGRLL HL+        N++ L++DEAD+++E+GF+E
Sbjct:    9 LKIDQRIEKGLRENGFVSMKEVQQKVIPMALEGHDIIGSSQTGTGKTLAFLVPTLQRLVSLGWGGGDGLGCLVITPTRELALQIFDVL-SRIAKYTVLSTGLIMGGLEAEDELLKVNQ-MNILVCTPGRLLQHLQENPYLSTANVQILILDEADKMIEMGFKE 169          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DRS1_SCHPO (ATP-dependent RNA helicase drs1 OS=Schizosaccharomyces pombe GN=drs1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.162e-30
Identity = 70/168 (41.67%), Postives = 107/168 (63.69%), Query Frame = 1
Query:  388 SLNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPAN--GTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            S+NLS      +  LGF   T++Q +TIP  L G+D++GAA TGSGKT AF++P   IL  L ++P     T ++IL PTRELA+Q  S+   +   F      + +GG + K +   L K  ++++ATPGR +DH+RN++ F  +N++ +V+DEADR+LE GF +E+
Sbjct:  263 SMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVP---ILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKI-ASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADEL 426          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DBP4_CANGA (ATP-dependent RNA helicase DBP4 OS=Candida glabrata GN=DBP4 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.162e-30
Identity = 68/166 (40.96%), Postives = 109/166 (65.66%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQ-TSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            L +S  T   ++   F  MT++Q  +I   L G DV G A+TGSGKTLAFL+P +E L   ++   +G G +I++PTRELA+QI+ ++  +  G H+Q ++G+V+GG +   E +R+AK +N+++ TPGR+L H+         NL+ LV+DEADR L++GF++ +
Sbjct:   46 LPISKSTLKGLNEASFIKMTDIQRDSIVTSLQGHDVFGTAKTGSGKTLAFLVPVLEKLYRERWTEFDGLGALIISPTRELAMQIYEVLVKI--GSHTQFSAGLVIGGKDVNFELERIAK-INILIGTPGRILQHMDQAVGLNTSNLQMLVLDEADRCLDMGFQKTL 208          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: RH28_ARATH (DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis thaliana GN=RH28 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.482e-29
Identity = 72/167 (43.11%), Postives = 107/167 (64.07%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPAN--GTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            LNLS     A + LG+   T +QA  IP  L+GRD+  +A TGSGKT AF +P++E    L F+P     T ++ILTPTRELA+QI S++++L   F     G+++GG + + +   L    +++VATPGR++DHLRN+ S    +L  L++DEADR+L+ GF  E+
Sbjct:  172 LNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLE---RLLFRPKRVFATRVLILTPTRELAVQIHSMIQNL-AQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEI 334          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DBP4_PICGU (ATP-dependent RNA helicase DBP4 OS=Pichia guilliermondii GN=DBP4 PE=3 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 3.482e-29
Identity = 67/165 (40.61%), Postives = 105/165 (63.64%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            L +S  T   +    F S+T++Q + IP  L   DV+G ARTGSGKTLAFL+P IE L        +G   +I++PTRELA+Q F ++  + G ++S ++G+V GG + K E +R+++ +N+++ TPGR+  HL         NL+ LV+DEADR L++GF +++
Sbjct:   51 LPISEGTYKGLLENNFVSLTDIQKKAIPVALKSEDVMGTARTGSGKTLAFLVPVIEKLIRENITEYDGLAALIVSPTRELAVQTFEVLTKI-GKYNSFSAGLVTGGKDVKYEKERISR-MNILIGTPGRISQHLNEAVGMETSNLQVLVLDEADRCLDMGFRKQI 213          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: RH28_ORYSJ (DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa subsp. japonica GN=Os12g0481100 PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 4.547e-29
Identity = 74/167 (44.31%), Postives = 105/167 (62.87%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGI--IILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            LNLS     A +ALG+   T +QA  IP  L+GRD+ G+A TGSGKT AF +P   +L  L F+P     I  +ILTPTRELA Q+ S++  L   F      +++GG + K +   L    +++VATPGR++DHLRN+ S   ++L  L++DEADR+LE+GF  E+
Sbjct:  199 LNLSRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLP---VLERLLFRPKRVPAIRVLILTPTRELAAQVHSMIEKL-AQFTDIRCCLIVGGLSTKVQEVALRSMPDIVVATPGRIIDHLRNSLSVGLEDLAILILDEADRLLELGFSAEI 361          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: DRS1_CRYNE (ATP-dependent RNA helicase DRS1 OS=Cryptococcus neoformans GN=DRS1 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.939e-29
Identity = 74/169 (43.79%), Postives = 109/169 (64.50%), Query Frame = 1
Query:  388 SLNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTL-KFKPANGTGIIILTPTRELALQIFSIVRDLM--GGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            ++NLS     A+ +L FT+ T +QAR IP  L GRD+LG+A TGSGKT AF++P +E L    + K      +++L PTRELA+Q  ++ + L   GG   + + +++GG +  ++A  L    ++++ATPGRL+DHL NT SF    L  LVIDEADR+LE GF +E+
Sbjct:  226 AMNLSRPLLRALTSLQFTAPTPIQARAIPLALLGRDILGSAVTGSGKTAAFMVPILERLCYRDRGKGGAACRVLVLCPTRELAVQCEAVGKALAEKGGLDVRFA-LLVGGLSLNAQAHTLRTLPDILIATPGRLIDHLTNTPSFTLSALDVLVIDEADRMLEAGFTDEL 393          
The following BLAST results are available for this feature:
BLAST of FC917080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH32_ORYSJ4.113e-3041.57DEAD-box ATP-dependent RNA helicase 32 OS=Oryza sa... [more]
DBP7_CANAL4.113e-3047.44ATP-dependent RNA helicase DBP7 OS=Candida albican... [more]
DRS1_PHANO5.372e-3042.26ATP-dependent RNA helicase DRS1 OS=Phaeosphaeria n... [more]
DBP4_ENCCU5.372e-3039.26ATP-dependent RNA helicase DBP4 OS=Encephalitozoon... [more]
DRS1_SCHPO9.162e-3041.67ATP-dependent RNA helicase drs1 OS=Schizosaccharom... [more]
DBP4_CANGA9.162e-3040.96ATP-dependent RNA helicase DBP4 OS=Candida glabrat... [more]
RH28_ARATH3.482e-2943.11DEAD-box ATP-dependent RNA helicase 28 OS=Arabidop... [more]
DBP4_PICGU3.482e-2940.61ATP-dependent RNA helicase DBP4 OS=Pichia guillier... [more]
RH28_ORYSJ4.547e-2944.31DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sa... [more]
DRS1_CRYNE5.939e-2943.79ATP-dependent RNA helicase DRS1 OS=Cryptococcus ne... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA71BH03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA71BH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917080 ID=FC917080; Name=FC917080; organism=Citrus clementina; type=EST; length=886bp
CATACCTTGACATCCCTCGTCATGACACCCGTAGCATCAACATCGGCTGT
TCAGCAAAAGAAACGCAAGAGGTCAAAGCACGGCGGGAGCACTGCCGTCG
CCTCGACCTCGACCTCGACCATAGAGGCGAGTCCGGTGAAAAAGGTCAAG
AGCAAGGGAGAGGGCAAGCAACGTCAAGCTGTTGCTGCCGAGGAGAAGGA
AGATGACGATGAGGATGCTGTCGAGGAGCAGGAAGAGTCTGCTGCCGGGC
CGTCTGGGGGACAAGCTATGGACACGACCCCAGCCTCTGCTCCTGTCTCT
GCCGAAGCTGGTCCTTCGACAACCTCGGCCGCATCGGACACACCTACTAC
CACCGCCGGAACGGCCCTGACCTCTCAAACTTTCACCTCCCTCAACCTCT
CTTCCCAAACTCAATCCGCCATCGACGCCCTCGGATTCACCTCGATGACA
GAAGTTCAAGCCCGGACCATCCCTCCTCTCCTCTCCGGACGTGACGTCCT
CGGTGCAGCCCGAACCGGATCCGGCAAGACCCTGGCTTTCCTGATCCCTT
CCATCGAAATCCTCAGTACTCTCAAGTTCAAACCGGCCAACGGGACGGGT
ATCATCATCCTCACGCCAACCAGGGAACTGGCCCTTCAGATCTTCTCCAT
CGTGAGGGATCTGATGGGTGGATTCCACAGTCAGACGTCTGGAGTAGTCA
TGGGCGGTGCGAATAGGAAATCCGAGGCGGATAGGTTGGCCAAGGGGGTC
AACCTGATCGTGGCTACTCCGGGGAGGTTGTTGGATCACTTGAGGAACAC
CAAATCCTTCGTTTTTCAGAATCTCAAAGCGCTCGTCATCGACGAGGCGG
ACCGGATCTTGGAAGTCGGGTTCGAGGAGGAAATGA
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