FC917085

Overview
NameFC917085
Unique NameFC917085
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length916
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC917085 vs. ExPASy Swiss-Prot
Match: LCYB_SYNE7 (Lycopene beta cyclase OS=Synechococcus elongatus (strain PCC 7942) GN=crtL PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.813e-13
Identity = 46/117 (39.32%), Postives = 62/117 (52.99%), Query Frame = 3 
Query:  531 ILDLVVIGCGPAGLALAAESAKLGLNV-GL--IGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRKCVESGVSYLSSKVESITEST 872
            + D +VIG GPAGLA+AAE A+ GL V GL  + P  P+ N YG+W  E   LGLE    H W + V Y  E  P+     YG   R  L +  LR+C + G+ +   K  +I   +
Sbjct:    1 MFDALVIGSGPAGLAIAAELAQRGLKVQGLSPVDPFHPWENTYGIWGPELDSLGLEHLFGHRWSNCVSYFGE-APVQHQYNYGLFDRAQLQQHWLRQCEQGGLQWQLGKAAAIAHDS 116
The following BLAST results are available for this feature:
BLAST of FC917085 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
LCYB_SYNE72.813e-1339.32Lycopene beta cyclase OS=Synechococcus elongatus (... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA26AH05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA26AH05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917085 ID=FC917085; Name=FC917085; organism=Citrus clementina; type=EST; length=916bp
AAATTCTTCACTTTGCAAACACACACTAAAAACGTTTTAGTGAGCAAACT
CAAAAGAAACAACACAAACCAAAATTCATTTTGTGAAAAAGAAAAAATTA
GTGGCATACAACGTCTCTAGAGACGCACAGCAATGGCGTGAAAACTGAAA
ACCGAAGCTTTTTATGAGAAGCGGAAGAGAATTAAGAGAAAAAGCAGAAG
AAGAAGGCAAAAATGGAATACTACTGTCTTGGAGCTCGAAATTTCGCAGC
AATGGCGGTATCTCCTTTCCCAACAGGGCGGACGCGAAGGAAAGCACTGA
GAGTGAGAACCAAACAGAGTGCTGTAGATTGTAATCATAGTTCCTATAAA
GTGACAGCTAGAGCTACTAGTAGTAATGCTGGTAGTGAGAGTTGCGTAGC
CGTCAAAGAAGAAGATTATATTAAGGCCGGTGGCTCTCAGCTTGTTTTCG
TACAAATGCAGCAAAACAAGTCAATGGATAAACAGTCTAAATTAGCCGAT
AAGCTACCGCCAATATCAATTGGTAATGGTATTTTGGATTTGGTGGTGAT
TGGTTGTGGCCCAGCTGGTCTTGCTTTGGCTGCAGAATCAGCGAAGTTGG
GATTAAATGTTGGACTTATTGGCCCGGATCTCCCTTTCACAAACAATTAT
GGTGTGTGGGAAGATGAATTTAGAGATCTTGGACTTGAAGGGTGTATCGA
ACATGTCTGGAGAGACACAGTTGTATATATTGATGAAGATGAACCCATCT
TGATTGGTCGTGCTTATGGACGAGTTAGTCGACATTTGCTTCATGAAGAA
TTATTAAGAAAGTGTGTCGAGTCAGGTGTTTCATATCTTAGCTCAAAAGT
GGAAAGCATTACGGAATCTACCAGTGGTCATCGTCTTGTACCTTGTGAAC
ATGATATGATTGTCCC
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