FC917089

Overview
NameFC917089
Unique NameFC917089
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length925
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917089 vs. ExPASy Swiss-Prot
Match: YKN1_SCHPO (Uncharacterized transporter B1A11.01 OS=Schizosaccharomyces pombe GN=SPAPB1A11.01 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.697e-13
Identity = 46/174 (26.44%), Postives = 83/174 (47.70%), Query Frame = 3
Query:  360 WPSWKKWMYLCSVATIQIAMNYNTSVYPNAVAPLVEEFGITEQKARTGQMIYLIFYSFGCELWAPWSEEFGRWPILQLSETLINIFILPAALANNFGSILAGRALSG-LSTAGGSVTLGLIADLYEPDEQQWPLAFIVLASCIGTSIGGVIGGPIE-RFLHWRWNFWIQLIFNG 875
            WP   + +    ++ + +   Y +SV+  ++  L E+FG  E     G  +Y+I    G  +++P SE +GR P+     TL  +  +P AL+ N    +  R  SG   + G  +  G ++D++   ++   +    L  C+G +I  +  G I    + WRW FWI L+ +G
Sbjct:   33 WPIRIRIINTIIISFMTMLCMYGSSVFMPSIPELCEKFGEPETLVVLGATLYVIGVMLGPLIFSPLSELYGRRPLNIFGYTLFALMQIPTALSVNLAMFVVFRFFSGFFGSVGLGIGAGSLSDMFSKRDRGKYIGIYFLGICLGPAIAPIASGFIAGSSISWRWEFWILLMLSG 206          
BLAST of FC917089 vs. ExPASy Swiss-Prot
Match: YQEH_SCHPO (Uncharacterized transporter C576.17c OS=Schizosaccharomyces pombe GN=SPCC576.17c PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.076e-12
Identity = 49/193 (25.39%), Postives = 92/193 (47.67%), Query Frame = 3
Query:  357 NWPSWKKWMYLCSVATIQIAMNYNTSVYPNAVAPLVEEFGITEQKARTGQMIYLIFYSFGCELWAPWSEEFGRWPILQLSETLINIFILPAALANNFGSILAGRALSGL--STAGGSVTLGLIADLYEPDEQQWPLAFIVLASCIGTSIGGVIGGPIER--FLHWRWNFWIQLIFNGGAQAIHFFMPESRATI 923
            NW  WKK   +    ++Q+ + +  + YP     ++E + ++ Q +  GQ ++++  + G     P S+  GR  +   S  +   F +  ALA N+  ++    + G+  STA G+V  G +AD+   ++  W + ++ +  C   S+G  +G  +     L WRW +WI +I  G    +  F PE+   I
Sbjct:   74 NWGWWKKAYIVLLSTSLQMYVFWTPNFYPGVQDSVMELWHLSSQVSLLGQSMFVLGVALGPLFLGPLSDLLGRKLVYIGSLIIYVCFCISCALARNYAQLVISMLIMGVVGSTALGNVA-GAVADVLGDEDSNWGM-YMFIFMCSVASVGSPMGTGVAENPKLTWRWLYWIDVIVGGFFIILFVFTPETLPAI 264          
BLAST of FC917089 vs. ExPASy Swiss-Prot
Match: BMRP_CANAL (Benomyl/methotrexate resistance protein OS=Candida albicans GN=MDR1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.835e-12
Identity = 61/222 (27.48%), Postives = 97/222 (43.69%), Query Frame = 3
Query:  279 HNEKTNVRPDGKRELTEEDAYDILA--YNWPSWKKWMYLCSVATIQIAMNYNTSVYPNAVAPLVEEFGITEQKARTGQMIYLIFYSFGCELWAPWSEE--FGRWPILQLSETLINIFILPAALANNFGSILAGRALSG------LSTAGGSVTLGLIADLYEPDEQQWPLAFIVLASCIGTSIGGVIGGPIERFLHWRWNFWIQLIFNG-GAQAIHFFMPES 911
            +N   N   DG + +   D  D      NWP+ +K  ++  ++ +  ++   ++VY   +  L+ +FGI    A     +++I Y  G  +++P SE   FGR  I  ++  L  I  +P AL NN   +   R L G      L+T G SV     AD+ +       LA   L +  G S G   G  +     WRW FW   I +G     + F +PE+
Sbjct:   81 NNNNNNNDVDGDKIVVTWDGDDDPENPQNWPTLQKAFFIFQISFLTTSVYMGSAVYTPGIEELMHDFGIGRVVATLPLTLFVIGYGVGPLVFSPMSENAIFGRTSIYIITLFLFVILQIPTALVNNIAGLCILRFLGGFFASPCLATGGASV-----ADVVKFWNLPVGLAAWSLGAVCGPSFGPFFGSILTVKASWRWTFWFMCIISGFSFVMLCFTLPET 297          
BLAST of FC917089 vs. ExPASy Swiss-Prot
Match: MFS1_SCHPO (Transporter mfs1 OS=Schizosaccharomyces pombe GN=mfs1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.396e-12
Identity = 60/228 (26.32%), Postives = 108/228 (47.37%), Query Frame = 3
Query:  267 EANTHNEKTN-VRPDGKRELT---EEDAYDILAYNWPSWKKWMYLCSVATIQIAMNYNTSVYPNAVAPLVEEFGITEQKARTGQMIYLIFYSFGCELWAPWSE--EFGRWPILQLSETLINIFILPAALANNFGSILAGRALSG------LSTAGGSVTLGLIADLYEPDEQQWPLAFIVLASCIGTSIGGVIGGPIERFLHWRWNFWIQLIFNGGAQA-IHFFMPES 911
            +++  +EKTN V  +G   +T   E+D  +    NWP W K +    V  +  A+   ++++   +  + E   +       G  +++  Y+ G  +++P SE  + GR  I  LS  +     +P AL ++ G +L  R L+G      LST G S     +AD+++P    + + F  L +  G  +G ++G  +     WRW FW+ ++ +      I FFMPE+
Sbjct:   44 DSSFDDEKTNQVNSEGLIIVTWDGEDDPEN--PKNWPLWAKLVVTFDVCFLTFAVYMGSAIFTPGIQEIRETMHVGTVPVILGLTLFVEGYAVGPLIFSPLSEVPQIGRQKIYVLSLIVFICLQIPTALGSSLGVLLPMRFLAGVFGSPALSTGGAS-----LADIWQPWLYPYFMCFWSLGAVGGPVLGPLLGAAMVVAKSWRWQFWLLMMISALVLVIITFFMPET 264          
BLAST of FC917089 vs. ExPASy Swiss-Prot
Match: CYHR_CANMA (Cycloheximide resistance protein OS=Candida maltosa GN=CYHR PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.106e-12
Identity = 51/199 (25.63%), Postives = 87/199 (43.72%), Query Frame = 3
Query:  354 YNWPSWKKWMYLCSVATIQIAMNYNTSVYPNAVAPLVEEFGITEQKARTGQMIYLIFYSFGCELWAPWSE--EFGRWPILQLSETLINIFILPAALANNFGSILAGRALSG------LSTAGGSVTLGLIADLYEPDEQQWPLAFIVLASCIGTSIGGVIGGPIERFLH----WRWNFWIQLIFNGGA-QAIHFFMPES 911
            YNWP   K +    +  + +++   +++Y   V  ++ +F I    A     +++I Y  G   W+P SE    GR P+  ++  +  I  +P AL+N+   +   R ++G      LST G S    +    Y      W +  +      G SIG +IG  +    H    WRW+FW   I +G     + F +PE+
Sbjct:   92 YNWPFAWKAIAAMQIGFLTVSVYMASAIYTPGVEEIMNQFNINSTLATLPLTMFVIGYGIGPLFWSPLSENSRIGRTPLYIITLFIFFILQIPTALSNHIAGLSVLRVIAGFFAAPALSTGGASYGDFIAMHYYSIALGVWSIFAVA-----GPSIGPLIGAAVINRSHDADGWRWSFWFMAILSGVCFIVLSFSLPET 285          
BLAST of FC917089 vs. ExPASy Swiss-Prot
Match: YCUD_SCHPO (Uncharacterized transporter C965.13 OS=Schizosaccharomyces pombe GN=SPCC965.13 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.029e-11
Identity = 51/194 (26.29%), Postives = 89/194 (45.88%), Query Frame = 3
Query:  354 YNWPSWKKWMYLCSVATIQIAMNYNTSVYPNAVAPLVEEFGITEQKARTGQMIYLIFYSFGCELWAPWSEEFGRWPILQLSETLINIFILPAALANNFGSILAGRALSGLSTAGGSVTLGLIA----DLYEPDEQQWPLAFIVLASCIGTSIGGVIGGPIERFLHWRWNFWIQLIFNGGAQAIHFFMPESRATI 923
            + WP WKK         +++ + ++++   N        +  + Q +   Q ++++  +FG  L  P S+ FGR  +   S  L  IF +P ALA N   +    A++G   A GS  L  +A    D++ P+   + ++  V  +  G SIG  IG  +  + HWRW +W+ +I  G    +    PE+   I
Sbjct:   81 HKWPLWKKLFVATVYTFLEVYVIWSSTACINFFDIYQTNWHCSIQVSYLVQSLFIVGNAFGPMLLGPMSDIFGRKWVYVGSLILYIIFQIPQALAYNLPMMAINSAIAG---AFGSSALANVASSMCDIFTPETVGFGISLFVWGANAGASIGSPIGEAL--YDHWRWFYWMNMIVGGFFVILCVLCPETLPVI 269          
BLAST of FC917089 vs. ExPASy Swiss-Prot
Match: BCR_ECOLI (Bicyclomycin resistance protein OS=Escherichia coli (strain K12) GN=bcr PE=1 SV=4)

HSP 1 Score: 70.0922 bits (170), Expect = 2.029e-11
Identity = 40/167 (23.95%), Postives = 82/167 (49.10%), Query Frame = 3
Query:  405 IQIAMNYNTSVYPNAVAPLVEEFGITEQKARTGQMIYLIFYSFGCELWAPWSEEFGRWPILQLSETLINIFILPAALANNFGSILAGRALSGLSTAGGSVTL-GLIADLYEPDEQQWPLAFIVLASCIGTSIGGVIGGPIERFLHWRWNFWIQLIFNGGAQAIHFFM 902
            + + M  +  +Y  A+  +  +FG+     +     Y++ ++ G  ++ P ++ FGR P++     +     +  ALAN    ++  R   GL+ A  SV +  L+ D+Y  +E    ++F++L + I   +  ++GG +  +L W + FWI  +    A A+ FF+
Sbjct:   18 LAMLMPLSIDMYLPALPVISAQFGVPAGSTQMTLSTYILGFALGQLIYGPMADSFGRKPVVLGGTLVFAAAAVACALANTIDQLIVMRFFHGLAAAAASVVINALMRDIYPKEEFSRMMSFVMLVTTIAPLMAPIVGGWVLVWLSWHYIFWILALAAILASAMIFFL 184          
The following BLAST results are available for this feature:
BLAST of FC917089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
YKN1_SCHPO3.697e-1326.44Uncharacterized transporter B1A11.01 OS=Schizosacc... [more]
YQEH_SCHPO1.076e-1225.39Uncharacterized transporter C576.17c OS=Schizosacc... [more]
BMRP_CANAL1.835e-1227.48Benomyl/methotrexate resistance protein OS=Candida... [more]
MFS1_SCHPO2.396e-1226.32Transporter mfs1 OS=Schizosaccharomyces pombe GN=m... [more]
CYHR_CANMA9.106e-1225.63Cycloheximide resistance protein OS=Candida maltos... [more]
YCUD_SCHPO2.029e-1126.29Uncharacterized transporter C965.13 OS=Schizosacch... [more]
BCR_ECOLI2.029e-1123.95Bicyclomycin resistance protein OS=Escherichia col... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA83DD07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA83DD07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917089 ID=FC917089; Name=FC917089; organism=Citrus clementina; type=EST; length=925bp
CGCATTTGAAGACACACGCTGATTGAAGCGACGAGGACACGGTCCAGTCG
TACACCCACTTCCCATTGTTCAACGTCATGCTGTGGAGCAGGCCGTTCGA
TCAATAATAACCACGAGATGTCTCTCCATGGGCACCTTCCTTCTCTCCAT
TCGTCTCCTTTCTCCCCCAGACAATCAATATGGCGAACGACCAACAGGTT
CTCGGAGGGCCAGACCCCACTGGCAGCACCAGCGACTCCGACGACAAGAC
CATTACTCCTCCCAACGAGGCCAACACTCACAACGAGAAAACCAACGTGC
GCCCCGATGGCAAGCGCGAGTTGACGGAGGAAGATGCCTACGACATCCTC
GCCTACAACTGGCCGTCATGGAAGAAATGGATGTACCTTTGCTCCGTCGC
CACTATTCAGATTGCCATGAACTACAACACCTCTGTCTACCCTAATGCGG
TTGCACCTTTGGTCGAGGAGTTCGGCATCACCGAGCAGAAAGCTCGTACC
GGTCAGATGATCTACCTGATCTTCTACTCGTTCGGTTGCGAGTTGTGGGC
GCCATGGAGTGAGGAGTTCGGCCGCTGGCCTATCCTCCAGCTTTCGGAGA
CCCTCATCAACATTTTCATCCTTCCGGCCGCTCTGGCCAACAACTTTGGC
AGCATTCTTGCCGGTCGCGCATTGAGCGGTCTTTCTACTGCTGGTGGCAG
TGTCACCCTGGGTCTTATCGCCGATTTGTACGAGCCTGACGAGCAACAAT
GGCCTCTGGCTTTCATTGTCCTTGCGTCCTGTATCGGTACCAGTATCGGT
GGTGTCATCGGTGGTCCCATCGAAAGATTCCTTCACTGGCGTTGGAACTT
CTGGATCCAGCTCATCTTCAACGGTGGCGCGCAGGCGATCCATTTCTTCA
TGCCTGAAAGCCGTGCGACTATCAT
back to top