FC917637

Overview
NameFC917637
Unique NameFC917637
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length940
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917637 vs. ExPASy Swiss-Prot
Match: E13B_MAIZE (Glucan endo-1,3-beta-glucosidase, acidic isoform OS=Zea mays PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.350e-26
Identity = 79/219 (36.07%), Postives = 117/219 (53.42%), Query Frame = 1
Query:  292 SIGINYGQIANNLPTPENVIPLVKSIGATRVKLYDADPKVLKAFANTGVEFTVSLGNEYLAKMR-DPDCAKTWIKSNVQAYLPATKITC--INVGNEVLTFNDTSLSGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFAYKGSPKQVSLDFVLFSANQGIVDPASNLHYDNMLFA 939
            SIG+ YG   +NLP   +V+ L +S G   +++Y  D   L A + T +   + + N  LA +  DP  A  W++SNVQA   + +  C  I VGNEV +  DT   G +LPAM++++ AL N GL   + V+TA    V    +PPS G F +  +    P   +   T +P L N YPYF+Y G+P Q+ L + LF++   +V   SN  Y N+  A
Sbjct:   29 SIGVCYGVNGDNLPPASDVVQLYQSNGINLLRIYFPDANPLNALSGTSIGLIMDVPNTDLASLASDPSAAAAWVQSNVQA---SRRSACRYIAVGNEV-SGGDT---GSILPAMQNLNAALANAGLGGSIKVSTAVQSDVT-QGFPPSQGTFSQGYM---APSRQYLQSTGAPLLSNVYPYFSYVGNPAQIDLKYALFTSPGTVVQDGSNA-YQNLFDA 235          
BLAST of FC917637 vs. ExPASy Swiss-Prot
Match: E13A_HORVU (Glucan endo-1,3-beta-glucosidase GI OS=Hordeum vulgare PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 4.343e-25
Identity = 73/211 (34.60%), Postives = 113/211 (53.55%), Query Frame = 1
Query:  292 SIGINYGQIANNLPTPENVIPLVKSIGATRVKLYDADPKVLKAFANTGVEFTVSL-GNEYLAKM-RDPDCAKTWIKSNVQAYLPATKITCINVGNEVLTFNDTSLSGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFAYKGSPKQVSLDFVLFSANQGIV-DPASNL 915
            +IG+ YG +ANNLP    V+ L +S G T +++Y AD K L A   +G+   + + GN+ LA +  +   A  W++ NV+ Y PA  I  I  GNEV    DT     ++PAM ++  AL   GL   + V+T+     + +++PPS G F +  +  +  +L     T +P L N YPYFAYK +P+ + L++  F      V DP + L
Sbjct:    1 TIGVCYGVVANNLPPANEVVQLYRSNGLTGMRIYFADAKALSALRGSGIGLILDVGGNDVLASLAANASNAANWVRDNVRPYYPAVNIKYIAAGNEVWG-GDTQ---NIVPAMRNLGAALKAPGLG-TIKVSTSIRFDAVTNTFPPSNGVFAQAYMTDVARLL---ASTGAPLLTNVYPYFAYKDNPRDIQLNYATFRPGTTTVRDPNTGL 203          
BLAST of FC917637 vs. ExPASy Swiss-Prot
Match: E138_ARATH (Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis thaliana GN=At1g64760 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 2.383e-23
Identity = 78/245 (31.84%), Postives = 122/245 (49.80%), Query Frame = 1
Query:  232 LSRLLILFISGLLSHVKIG---TSIGINYGQIANNLPTPENVIPLVKSIGATRVKLYDADPKVLKAFANTGVEFTVSLGNEYLAKMRDPDCAKTWIKSNVQAYL--PATKITCINVGNE-VLTFNDTSLSGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGS--SYP-PSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFAYKGSPKQVSLDFVLFSANQGIVDPASNLHYDNMLFA 939
            +S LL L +  ++    +G     +G+N+G +A +   P+ V+ ++K     +VKL+DAD   + A A +G+E  V++ N+ L  M   D AK W++ NV  Y       IT + VGNE  L   + S      PA+ ++  AL   GL   V  T   +  V  S  S P PSAG FR D++  +T I+DF  K  +P  IN YP+ +  G+     L++  F   + I D  + + Y N+  A
Sbjct:    1 MSNLLALVVGFVIVIGHLGILVNGLGVNWGTMATHKLPPKTVVQMLKDNNINKVKLFDADETTMGALAGSGLEVMVAIPNDQLKVMTSYDRAKDWVRKNVTRYNFDGGVNITFVAVGNEPFLKSYNGSFINLTFPALANIQNALNEAGLGNSVKATVPLNADVYDSPASNPVPSAGRFRPDIIGQMTQIVDFLGKNNAPITINIYPFLSLYGN-DDFPLNYAFFDGAEPIND--NGIDYTNVFDA 242          
BLAST of FC917637 vs. ExPASy Swiss-Prot
Match: E135_ARATH (Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis thaliana GN=At4g31140 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.383e-23
Identity = 76/239 (31.80%), Postives = 124/239 (51.88%), Query Frame = 1
Query:  241 LLILFISGLLSHVKIGTSIGINYGQIANNLPTPENVIPLVKSIGATRVKLYDADPKVLKAFANTGVEFTVSLGNEYLAKMR-DPDCAKTWIKSNVQAYLPA--TKITCINVGNE--VLTFNDTSLSGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGS-SYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFAYKGSPKQVSLDFVLFSANQGIVDPASNLHYDNMLFA 939
            ++ L  + LL  V+    IG+N+G  A +   P  V+ L++  G  +VKL++AD  +LKA + TG++  V + N+ LA +      A+ W+  NV A++ +    I  + VGNE  +  FN T   G  LPA++++ +A++  GL  QV VT   +  V  S S  PS G FR ++ D +  I+ F     +PF IN YP+ +    P    ++F  F      ++    + YDN+L A
Sbjct:   12 VITLLYASLLIEVE---GIGVNWGSQARHPLPPATVVRLLRENGIQKVKLFEADSAILKALSRTGIQVMVGIPNDLLAPLAGSVAAAERWVSQNVSAHVSSNGVDIRYVAVGNEPFLKAFNGT-FEGITLPALQNIQSAIIKAGLATQVKVTVPLNADVYQSASNLPSDGDFRPEIRDLMLNIVKFLSDNGAPFTINIYPFISLYNDP-NFPVEFAFFDGTGTPINDNGRI-YDNVLDA 244          
BLAST of FC917637 vs. ExPASy Swiss-Prot
Match: E136_ARATH (Glucan endo-1,3-beta-glucosidase 6 OS=Arabidopsis thaliana GN=At5g58090 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 2.018e-22
Identity = 72/236 (30.51%), Postives = 120/236 (50.85%), Query Frame = 1
Query:  235 SRLLILFISGLLSHVKIGTSIGINYGQIANNLPTPENVIPLVKSIGATRVKLYDADPKVLKAFANTGVEFTVSLGNEYLAKMRDP-DCAKTWIKSNVQAYLPA--TKITCINVGNE--VLTFNDTSLSGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYP-PSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFAYKGSPKQVSLDFVLFSANQGIVDPASNLHYD 924
            S LL+L ++ L       +SIG N+G  A++   P+ V+ +++  G  +VKL+DA+   L+A   +G+E  V + NE LA +      A+ W+  NV  ++      I  + VGNE  + T+N + LS    PA+ ++  A++  GL  QV VT   +  V  SS   PS G FR ++ D +  I+ F  +   PF +N YPY +   +P    +D+  F  N   ++     +Y+
Sbjct:    5 SVLLLLAVALLCQRA---SSIGANWGTQASHPLPPDIVVRMLRENGIQKVKLFDAEYDTLRALGKSGIEVMVGIPNEMLATLASSLKAAEKWVAKNVSTHISTDNVNIRYVAVGNEPFLSTYNGSYLS-TTFPALRNIQIAIIKAGLQNQVKVTCPLNADVYDSSTTFPSGGDFRANIRDLMITIVKFLSENGGPFTVNIYPYISLYTNP-DFPVDYAFFDGNAQPLNDGGTFYYN 235          
BLAST of FC917637 vs. ExPASy Swiss-Prot
Match: E13D_HORVU (Glucan endo-1,3-beta-glucosidase GIV OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.870e-22
Identity = 71/218 (32.57%), Postives = 110/218 (50.46%), Query Frame = 1
Query:  295 IGINYGQIANNLPTPENVIPLVKSIGATRVKLYDADPKVLKAFANTGVEFTVSLGNEYLAKMRDP-DCAKTWIKSNVQAYLPA-TKITCINVGNEVLTFNDTSLSGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFAYKGSPKQVSLDFVLFSANQGIVDPASN-LHYDNMLFA 939
            IG+ YG IANNLP    V+ L +S G T +++Y   P+ ++A   +G+   +   N  +A +      A +W+ +NV+ Y  A   I  I VGNE+        +  +L AM +++ AL    L   + V+TA    V+ +S+PPS+  F +  +  I   L     T +P L N YPYFAY G+P+ + L++  F      V  A N L Y N+  A
Sbjct:    1 IGVCYGIIANNLPPRREVVQLYRSKGITNMRIYSVQPQAIRALHGSGIRLMLGTTNNDVAVLAGSLSAATSWVHANVKPYHSAGVTIRYIAVGNEI----TGGAAQSILAAMRNLNKALAAARLG-GIKVSTAVRFDVITNSFPPSSAVFAQPYMVDIARHL---ASTNAPLLANVYPYFAYSGNPRDIKLNYATFQPGATPVRDAGNGLIYTNLFNA 210          
BLAST of FC917637 vs. ExPASy Swiss-Prot
Match: E139_ARATH (Glucan endo-1,3-beta-glucosidase 9 OS=Arabidopsis thaliana GN=At5g58480 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.805e-21
Identity = 72/225 (32.00%), Postives = 109/225 (48.44%), Query Frame = 1
Query:  220 MVMELSRLLILFISGLLSHVKIGTSIGINYGQIANNLPTPENVIPLVKSIGATRVKLYDADPKVLKAFANTGVEFTVSLGNEYLAKMR-DPDCAKTWIKSNVQAYLPA---TKITCINVGNE-VLTFNDTSLSGCLLPAMESVHTALVNLGLDKQVSVTTAHSL-GVLGSSYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFAYKGSPKQVSLDFVLF 876
            M   L  LL+   +GL        ++GIN+G  A++   P  V+ L+KS G  +VKL+DADPKVL+A + + +  T+ + N  L  +      A++W+  NV  Y       +I  + VG E  L          ++ A  ++  ALV   L  +V V    S    L  S  PS+G FR DL   +  +L F  K  SPF +   P+ ++  + K +SLDF LF
Sbjct:    1 MARRLFLLLLAVTAGLSLTGTTVRAVGINWGTEASHPLPPSKVVELLKSNGIVKVKLFDADPKVLRALSGSNIGVTIGIQNSMLKSLNASVKVAESWVHDNVTRYFNGGNRVRIEYVAVGEEPFLQSYGNQYKPFVIGAAMNIQNALVKANLANEVKVVVPSSFDSFLSESGRPSSGHFRADLNKTMIELLSFLTKHHSPFFVTISPFLSFHQN-KNISLDFSLF 224          
BLAST of FC917637 vs. ExPASy Swiss-Prot
Match: E13I_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform PR-N (Fragment) OS=Nicotiana tabacum GN=PRN PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.107e-20
Identity = 58/180 (32.22%), Postives = 89/180 (49.44%), Query Frame = 1
Query:  409 VLKAFANTGVEFTVSLGNEYLAKMRDPDCAKTWIKSNVQAYLPATKITCINVGNEVLTFNDTSLSGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFAYKGSPKQVSLDFVLFSANQGIVDPASNLH---YDNMLFA 939
            V  A   + +E  + +  + L  + DP  A  W++ N+  + P  K   I VGN+V   N+   +  + PAM++V+ AL   GL  Q+ V+TA   G+L ++YPP    FR +    I PI+ F V+   P L N YPYF +  +   V L + LF+  +       NL     D+M FA
Sbjct:    2 VFNALRGSNIEIILDVPLQDLQSLTDPSRANGWVQDNIINHFPDVKFKYIAVGNKVSPGNNGQYAPFVAPAMQNVYNALAAAGLQDQIKVSTATYSGILANTYPPKDSIFRGEFNSFINPIIQFLVQHNLPLLANVYPYFGHIFNTADVPLSYALFTQQEANPAGYQNLFDALLDSMYFA 181          
BLAST of FC917637 vs. ExPASy Swiss-Prot
Match: E131_ARATH (Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.654e-16
Identity = 48/131 (36.64%), Postives = 75/131 (57.25%), Query Frame = 1
Query:  556 INVGNEVLTFNDTSLSGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFAYKGSPKQVSLDFVLF---SANQGIVDPASNLHYDNMLFA 939
            I+  +  L+ N  S +  LLPA+ES++ ALV   L  Q+ V+T H+  ++  ++PPS   F +     + P+L F  KT SP ++N YPY+ Y  +   V LD  LF   + ++ +VDP + LHY N+L A
Sbjct:   22 ISANSSSLSHNVPSSAPLLLPAIESLYNALVASNLHTQIKVSTPHAASIMLDTFPPSQAYFNQTWHSIMVPLLQFLSKTGSPLMMNLYPYYVYMQNKGVVPLDNCLFEPLTPSKEMVDPNTLLHYTNVLDA 152          
BLAST of FC917637 vs. ExPASy Swiss-Prot
Match: E13B_SOYBN (Glucan endo-1,3-beta-glucosidase (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.450e-14
Identity = 51/166 (30.72%), Postives = 82/166 (49.40%), Query Frame = 1
Query:  436 VEFTVSLGNEYLAKMRDPDCAKTWIKSNVQAYLPATKITCINVGNEVLTFNDTSLSGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFAYKGSPKQVSLDFVLFSANQGIVDPASNLHYDNML 933
            +E  + +  E L  + D + A  W+   V  Y        I VGNE+    +T+++  +L AM ++  A+ +      + V+TA    ++ +SYPP+ G F  D    I PI++F V   +P L N YPYFAY  + + + L + LF+  QG  D      +D ML
Sbjct:    3 IELIMDVAKETLQSLTDSNAATDWVNKYVTPYSQDVNFKYIAVGNEI--HPNTNVAQYILSAMTNIQNAISSRKFT--IKVSTAIDSTLITNSYPPNDGVFTSDAEPYIKPIINFLVSNGAPLLANVYPYFAY-ANDQSIPLAYALFT-QQGNNDVGYQNLFDAML 162          
The following BLAST results are available for this feature:
BLAST of FC917637 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
E13B_MAIZE1.350e-2636.07Glucan endo-1,3-beta-glucosidase, acidic isoform O... [more]
E13A_HORVU4.343e-2534.60Glucan endo-1,3-beta-glucosidase GI OS=Hordeum vul... [more]
E138_ARATH2.383e-2331.84Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis ... [more]
E135_ARATH2.383e-2331.80Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis ... [more]
E136_ARATH2.018e-2230.51Glucan endo-1,3-beta-glucosidase 6 OS=Arabidopsis ... [more]
E13D_HORVU5.870e-2232.57Glucan endo-1,3-beta-glucosidase GIV OS=Hordeum vu... [more]
E139_ARATH3.805e-2132.00Glucan endo-1,3-beta-glucosidase 9 OS=Arabidopsis ... [more]
E13I_TOBAC1.107e-2032.22Glucan endo-1,3-beta-glucosidase, acidic isoform P... [more]
E131_ARATH1.654e-1636.64Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis ... [more]
E13B_SOYBN3.450e-1430.72Glucan endo-1,3-beta-glucosidase (Fragment) OS=Gly... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA6DD06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA6DD06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917637 ID=FC917637; Name=FC917637; organism=Citrus clementina; type=EST; length=940bp
ATCTTTCTCAAACTCGTTGCTTTCACCATTGCGTGTCCGATCTTGTCAAG
TGGTGAAAAGTGAACTCACGTTAACGCACAGTTGTCCAAGCTTTACTTGC
GGAAATTGAATACCCATTTCGATTTAGGGCATTCAATCAAATCTACCTAT
TAGGCCTTTAGCTAGTCTTCACTTTGTGGTGTCTCAGTTTCACACAACTT
TAGATTGGATCCGTCATTCATGGTCATGGAGTTAAGTAGATTGCTCATTC
TTTTCATTTCAGGATTATTGTCTCATGTAAAGATTGGAACTTCAATTGGG
ATCAACTATGGCCAAATTGCAAACAATTTACCAACTCCAGAAAATGTAAT
ACCTCTAGTGAAATCAATTGGTGCCACCAGAGTGAAGCTCTATGATGCAG
ATCCAAAAGTTCTCAAAGCATTTGCAAACACTGGTGTTGAATTCACGGTA
AGTCTAGGAAATGAGTACTTAGCCAAAATGAGAGACCCAGATTGTGCTAA
AACTTGGATCAAATCCAACGTACAAGCTTACTTACCAGCCACCAAAATCA
CTTGCATCAATGTCGGCAATGAAGTTTTAACCTTTAATGACACCTCACTC
AGTGGCTGCTTACTTCCTGCAATGGAAAGTGTTCACACAGCATTAGTGAA
TCTCGGACTTGACAAACAAGTTAGTGTCACTACAGCTCATTCTCTAGGTG
TTCTTGGAAGCTCATACCCGCCTTCAGCTGGAGCTTTCCGTAAAGATCTG
GTGGATTGTATAACACCCATCTTGGACTTTCATGTCAAAACTGCCTCTCC
ATTTTTGATTAATGCTTACCCTTATTTTGCTTACAAGGGTAGTCCAAAGC
AGGTGTCTCTAGATTTTGTATTGTTTTCAGCAAACCAAGGGATTGTTGAC
CCAGCTTCAAATCTTCATTATGACAACATGTTGTTTGCTC
back to top