FC917647

Overview
NameFC917647
Unique NameFC917647
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length910
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917647 vs. ExPASy Swiss-Prot
Match: SCP51_ARATH (Serine carboxypeptidase-like 51 OS=Arabidopsis thaliana GN=SCPL51 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 3.194e-17
Identity = 55/174 (31.61%), Postives = 91/174 (52.30%), Query Frame = 1
Query:  307 GYVTVNEESGRALFYWFVEA---VEDPDSK-PLVLWLNGGPGCSSIAYGEAEEIGPF--HIKPDGKTLYLNPYSWNQVANILFLDSPVGVGFSY-SNTSSDITTNGDKRTAEDSLKFLLKWLERFSQFKGRDFYISGESYGGHYVPQLSKAIIRHNQATGEKAINLKGYMVGNA 807
            GYV V  ++   +F+W  ++   VE+P    P++LWL GGPG S +  G  +E+GP    +KP   T       W + A++LF+DSPVG G+S+      D+    D+  A+D  K L +   +         +I  ESYGG    +L  ++I   Q +G+  ++L G ++G++
Sbjct:   37 GYVEVRPKAH--MFWWHYKSPYRVENPSKPWPIILWLQGGPGASGVGIGNFQEVGPLDTFLKPRNST-------WLKKADLLFVDSPVGAGYSFVEGNQKDLYVKSDEEAAQDLTKLLQQLFNKNQTLNQSPLFIVAESYGGKIAVKLGLSVIDAVQ-SGKLKLHLGGVILGDS 200          
BLAST of FC917647 vs. ExPASy Swiss-Prot
Match: RISC_HUMAN (Retinoid-inducible serine carboxypeptidase OS=Homo sapiens GN=SCPEP1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.448e-17
Identity = 67/198 (33.84%), Postives = 92/198 (46.46%), Query Frame = 1
Query:  310 YVTVNEESGRALFYWFVEAV---EDPDSKPLVLWLNGGPGCSSIAYGEAEEIGPF--HIKPDGKTLYLNPYSWNQVANILFLDSPVGVGFSYSNTSSDITTNGDKRTAEDSLKFLLKWLERFSQFKGRDFYISGESYGGHYVP----QLSKAIIRHNQATGEKAINLKGYMVGNALTDDYHDYLGLFQFWWSAGLISD 876
            YVTV +++   +F+W   A    ++    PLV+WL GGPG SS  +G  EEIGP    +KP   T       W Q A++LF+D+PVG GFSY N  S          A D +  L  +     +F+   FYI  ESYGG        +L KAI R     G    N  G  +G++        L    + +S  L+ D
Sbjct:   42 YVTVRKDA--YMFWWLYYATNSCKNFSELPLVMWLQGGPGGSSTGFGNFEEIGPLDSDLKPRKTT-------WLQAASLLFVDNPVGTGFSYVN-GSGAYAKDLAMVASDMMVLLKTFFSCHKEFQTVPFYIFSESYGGKMAAGIGLELYKAIQR-----GTIKCNFAGVALGDSWISPVDSVLSWGPYLYSMSLLED 224          
The following BLAST results are available for this feature:
BLAST of FC917647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
SCP51_ARATH3.194e-1731.61Serine carboxypeptidase-like 51 OS=Arabidopsis tha... [more]
RISC_HUMAN5.448e-1733.84Retinoid-inducible serine carboxypeptidase OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA55AA03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA55AA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917647 ID=FC917647; Name=FC917647; organism=Citrus clementina; type=EST; length=910bp
TTAAGTTCTGTTCAGCAGATAAACTGAACAAAGAAAAAAAAAAAATTCCT
CAGAACACTATCATTGGCTCCAACGTTTTTGCTTGATTATGTCTTCTTTA
TAAGTCGCAGTACCCCAGTACACTAAACCATATAAAAAATGGCTTATAAT
CCAAAAGGGGCTTCCTTTCTTGTTCAAATCTTGTTCATTTGCATAATTTT
TTATCTGGGCAGTGCCTTTTCAACAGACCCAGTTGCCCAGCAAAAACTTG
ACAGAGTTGGGAAGCTACCTGGGCAAAATTTCAATGTCAACTTTGCCCAT
TACTCTGGTTATGTCACAGTCAACGAAGAATCCGGGAGGGCTCTCTTTTA
TTGGTTCGTTGAAGCTGTTGAAGATCCTGATTCCAAGCCTCTTGTGCTTT
GGCTCAATGGAGGGCCTGGGTGTTCATCCATTGCTTATGGAGAGGCAGAG
GAAATAGGTCCTTTTCACATCAAGCCAGATGGGAAGACCTTATACTTGAA
TCCTTACTCTTGGAATCAAGTTGCCAACATTCTGTTTCTTGATTCCCCCG
TTGGTGTTGGTTTTTCATATTCAAATACATCCTCTGATATTACGACCAAT
GGCGATAAAAGGACTGCGGAGGATTCCCTAAAATTTTTACTAAAGTGGTT
AGAACGGTTTTCACAATTTAAAGGAAGGGATTTCTACATCTCCGGGGAGA
GTTATGGAGGGCATTATGTTCCTCAGTTAAGCAAAGCAATCATAAGGCAC
AACCAAGCAACTGGGGAAAAAGCAATTAATCTGAAGGGCTACATGGTGGG
AAATGCTCTAACTGATGATTACCACGATTACTTGGGCCTTTTCCAGTTTT
GGTGGTCAGCTGGTTTGATATCTGATGATACGTACAAGCAACTAAACCTT
CTATGTGATT
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