FC917652

Overview
NameFC917652
Unique NameFC917652
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length915
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917652 vs. ExPASy Swiss-Prot
Match: PGSA_RICCN (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase OS=Rickettsia conorii GN=pgsA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.220e-16
Identity = 47/136 (34.56%), Postives = 76/136 (55.88%), Query Frame = 3
Query:  468 LPTILTLGRVAAVPLLICTFYVDSWWGRTTTTSIFIAAAVTDWLDGYIARKMRLGSTFGAFLDPVADKLMVAATLVLLCTKPLELPVFGQVPWLLTVPAIAIIGREITMSAVREWAASQNTKLLEAVAVNNLGKWK 875
            LP  LT+ R+  +P++I  FY+++   RT    +F+ A++TD+ DGYIARK  L ++FG   DP+ADKL+V   +++L  K            +  +P + I+ RE  +S +RE+ A        +V V+ L K K
Sbjct:    7 LPNYLTIARIMVIPVIILVFYINNSLARTLGALLFVLASITDFFDGYIARKYNLVTSFGKMFDPIADKLLVGCVIIMLLKKDN----------VDEIPCLLILAREFLVSGLREFLALVKV----SVPVSRLAKVK 128          
BLAST of FC917652 vs. ExPASy Swiss-Prot
Match: PGSA_RICFE (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase OS=Rickettsia felis GN=pgsA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.909e-16
Identity = 45/136 (33.09%), Postives = 75/136 (55.15%), Query Frame = 3
Query:  468 LPTILTLGRVAAVPLLICTFYVDSWWGRTTTTSIFIAAAVTDWLDGYIARKMRLGSTFGAFLDPVADKLMVAATLVLLCTKPLELPVFGQVPWLLTVPAIAIIGREITMSAVREWAASQNTKLLEAVAVNNLGKWK 875
            LP  LT+ R+  +P++I  FY+++   R     +F+ A++TD+ DGYIARK  L ++FG   DP+ADKL++   +++L  K            +  +P + I+ RE  +S +RE+ A        +V V+ L K K
Sbjct:    7 LPNYLTIARIMVIPVIILAFYINNSLARKLGALLFVLASITDFFDGYIARKYNLVTSFGKMFDPIADKLLIGCVIIMLLKKDN----------VDEIPCLLILAREFLVSGLREFLALVKV----SVPVSRLAKVK 128          
BLAST of FC917652 vs. ExPASy Swiss-Prot
Match: PGSA_RICTY (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase OS=Rickettsia typhi GN=pgsA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.349e-15
Identity = 46/136 (33.82%), Postives = 74/136 (54.41%), Query Frame = 3
Query:  468 LPTILTLGRVAAVPLLICTFYVDSWWGRTTTTSIFIAAAVTDWLDGYIARKMRLGSTFGAFLDPVADKLMVAATLVLLCTKPLELPVFGQVPWLLTVPAIAIIGREITMSAVREWAASQNTKLLEAVAVNNLGKWK 875
            LP  LT+ R+  +P++I  FY+++   R     +F+ A++TD+ DGYIARK  L ++FG   DP+ADKL+V    ++L  K            +  +P + I+ RE  +S +RE+ A        +V V+ L K K
Sbjct:    4 LPNYLTIARIMVIPVIILLFYINNSLARKLGALLFVLASITDFFDGYIARKYNLVTSFGKMFDPIADKLLVGCVTIMLLKKDN----------VDEIPCLLILAREFLVSGLREFLALVKV----SVPVSRLAKLK 125          
BLAST of FC917652 vs. ExPASy Swiss-Prot
Match: PGSA_RICPR (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase OS=Rickettsia prowazekii GN=pgsA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.349e-15
Identity = 46/136 (33.82%), Postives = 74/136 (54.41%), Query Frame = 3
Query:  468 LPTILTLGRVAAVPLLICTFYVDSWWGRTTTTSIFIAAAVTDWLDGYIARKMRLGSTFGAFLDPVADKLMVAATLVLLCTKPLELPVFGQVPWLLTVPAIAIIGREITMSAVREWAASQNTKLLEAVAVNNLGKWK 875
            LP  LT+ R+  +P++I  FY+++   R     +F+ A++TD+ DGYIARK  L ++FG   DP+ADKL+V    ++L  K            +  +P + I+ RE  +S +RE+ A        +V V+ L K K
Sbjct:    7 LPNYLTIARIMVIPVIILLFYINNSLARKLGALLFVLASITDFFDGYIARKYNLVTSFGKMFDPIADKLLVGCVTIMLLKKDN----------VDEIPCLLILAREFLVSGLREFLALVKV----SVPVSRLAKLK 128          
BLAST of FC917652 vs. ExPASy Swiss-Prot
Match: PGSA_RHOS4 (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=pgsA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.349e-15
Identity = 53/138 (38.41%), Postives = 76/138 (55.07%), Query Frame = 3
Query:  465 TLPTILTLGRVAAVPLLICTF-YVDSWWGRTTTTSIFIAAAVTDWLDGYIARKMRLGSTFGAFLDPVADKLMVAATLVLLCTKPLELPVFGQVPWLLTVPAIAIIGREITMSAVREWAASQNTKLLEAVAVNNLGKWK 875
            ++P ILT+ R+ A P +   F Y    W      ++FI AAVTD+ DGY+AR  +  S FGA LDP+ADK MV   LV++          G  PWL+ +P   I+ RE+ +S +RE+  ++ + L     V  L KWK
Sbjct:    4 SIPNILTVLRLLAAPGVAVMFLYFHRPWADWFALTLFILAAVTDFFDGYLARLWKQESKFGAMLDPIADKAMVVIALVII------TGYSGMNPWLI-LPVTLILFREVFVSGLREFLGAKASLL----KVTKLAKWK 130          
BLAST of FC917652 vs. ExPASy Swiss-Prot
Match: PGSA_BACSU (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase OS=Bacillus subtilis GN=pgsA PE=3 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 2.301e-15
Identity = 55/152 (36.18%), Postives = 76/152 (50.00%), Query Frame = 3
Query:  459 ILTLPTILTLGRVAAVPLLICTFYVDSWWGRTTTTS------------IFIAAAVTDWLDGYIARKMRLGSTFGAFLDPVADKLMVAATLVLLCTKPLELPVFGQVP-WLLTVPAIAIIGREITMSAVREWAASQNTKLLEAVAVNNLGKWK 875
            +  LP  +TL R+A +P+ +        WGR                 +FI A+ TDW+DGY ARK+ L + FG FLDP+ADKL+V+A L++L         F   P W++    I II RE  ++ +R   A       E VA N LGK K
Sbjct:    1 MFNLPNKITLARIALIPIFMIIMLAPFDWGRLEVGDESIPVAHLAGAILFIIASTTDWVDGYYARKLNLVTNFGKFLDPLADKLLVSAALIILVQ-------FDLAPAWMV----IVIISREFAVTGLRLVLAGTG----EVVAANMLGKIK 137          
The following BLAST results are available for this feature:
BLAST of FC917652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
PGSA_RICCN1.220e-1634.56CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
PGSA_RICFE7.909e-1633.09CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
PGSA_RICTY1.349e-1533.82CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
PGSA_RICPR1.349e-1533.82CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
PGSA_RHOS41.349e-1538.41CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
PGSA_BACSU2.301e-1536.18CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA55AA04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA55AA04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917652 ID=FC917652; Name=FC917652; organism=Citrus clementina; type=EST; length=915bp
TAACAATGGCAGCTTCGCTCTGCGCTACCCCATACAAACAACTCGTTTTT
CGCCACATCACCACCCGTAAAATATCTTCTCCAAAACTCTACCCCTCTCC
CTTTACCTCTCTCTCCGGGTGCAGGATACCCCCGTGCGCACTCCCCGTCC
CCTCCCCCTCCCCCTCCGCGCACGTTAGCCTGCAACCCCATAACAGCCTT
AGCCTAAGCCTTCCCTTCTCTGGCTTCCGCTACCGTAGCCCCAAACTATA
TATCTCTTCTCGCACCGGTGACACCACCACTCGATCCTCGACGAATAAAG
CCGAAGTTACCGGGTCGGATCCGGAATCTCCTTCGGATCCCGGGTCGGGT
CTCGTCGCTGACATGGATCATCAGGACAATGTCAAGGCCGTTAATGGCGG
TTGGTATTGCGATCAAACGCCGTCACCATCAATTCAGCAACACCAACCGT
CTAATAAGATTCTCACTTTGCCTACAATCTTAACGCTCGGCCGCGTAGCT
GCCGTTCCGCTTCTCATTTGCACTTTTTACGTGGATAGTTGGTGGGGGAG
GACAACGACTACAAGTATTTTTATTGCTGCAGCAGTCACAGATTGGCTCG
ATGGCTACATTGCTCGAAAGATGAGATTAGGCTCTACCTTTGGTGCATTT
TTGGATCCAGTAGCCGATAAGCTTATGGTTGCTGCTACATTGGTACTACT
GTGTACGAAACCTTTGGAATTGCCGGTGTTTGGGCAAGTGCCTTGGTTAC
TGACTGTACCTGCAATTGCAATTATTGGTAGAGAGATAACAATGTCTGCA
GTCAGAGAATGGGCTGCTTCTCAGAATACTAAGCTTTTAGAGGCTGTCGC
TGTAAATAACCTTGGCAAGTGGAAACTGCAACACAGATGATTGCACTATC
CATCCTTCTCACTAC
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