FC917665

Overview
NameFC917665
Unique NameFC917665
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length861
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: TRXR1_PIG (Thioredoxin reductase 1, cytoplasmic OS=Sus scrofa GN=TXNRD1 PE=2 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 5.323e-19
Identity = 58/205 (28.29%), Postives = 102/205 (49.76%), Query Frame = 1
Query:  241 TCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFM 852
            T +  R  LGGTC+NV CIP K L+H + +  +A+    ++G     +++ D   M       + +L  G     ++ KVTY   YG+F+ P  +     +G   +   +  +IATG   + L GI  D++  +SS    +L   P K +V+GA Y+ LE     A +G +VTV+   + ++   D ++  +    +E+  +KF+
Sbjct:   47 TPLGTRWGLGGTCVNVSCIPKK-LMHQAALLGQALRDSRNYGWNVEETIKHDWERMTEAVQNHIGSLNWGYRVALREKKVTYENAYGQFVGPHRIKATNNKGKEKIYSAEKFLIATGERPRYL-GIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVM-VRSILLRGFDQDMANKIGEHMEEHGIKFI 248          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: STHA_PSEPK (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas putida (strain KT2440) GN=sthA PE=3 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 5.323e-19
Identity = 66/204 (32.35%), Postives = 97/204 (47.55%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH--MYHEAMHSFASHGVK--FSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEI 804
            AA+ AA+ G K   ++ R  +GG C ++G IPSKAL HS    M       F + G    FS      P ++   +K ++       G + +N+V    G G F     V V    G    +  K+IIIATGS       I     R+  S   L+L+  P+KL+V GAG IG E  S+++ LG  V +V+    ++  +D EI
Sbjct:   20 AAMNAAKAGRKVAMVDDRRQVGGNCTHLGTIPSKALRHSVRQIMQFNTNPMFRAIGEPRWFS-----FPDVLKSAEKVIAKQVASRTGYYARNRVDVFVGTGSFADEQTVEVVCPNGVVEKLNAKHIIIATGSRPYRPADIDFHHPRVYDSDTILSLSHTPRKLIVYGAGVIGCEYASIFSGLGVLVELVDNRGQLLSFLDSEI 218          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: STHA_PSEP1 (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=sthA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.323e-19
Identity = 66/204 (32.35%), Postives = 97/204 (47.55%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH--MYHEAMHSFASHGVK--FSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEI 804
            AA+ AA+ G K   ++ R  +GG C ++G IPSKAL HS    M       F + G    FS      P ++   +K ++       G + +N+V    G G F     V V    G    +  K+IIIATGS       I     R+  S   L+L+  P+KL+V GAG IG E  S+++ LG  V +V+    ++  +D EI
Sbjct:   20 AAMNAAKAGRKVAMVDDRRQVGGNCTHLGTIPSKALRHSVRQIMQFNTNPMFRAIGEPRWFS-----FPDVLKSAEKVIAKQVASRTGYYARNRVDVFVGTGSFADEQTVEVVCPNGVVEKLNAKHIIIATGSRPYRPADIDFHHPRVYDSDTILSLSHTPRKLIVYGAGVIGCEYASIFSGLGVLVELVDNRGQLLSFLDSEI 218          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: STHA_PSEFS (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas fluorescens (strain SBW25) GN=sthA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.323e-19
Identity = 67/204 (32.84%), Postives = 96/204 (47.06%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH--MYHEAMHSFASHGVK--FSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEI 804
            AA+ AA+ G K   ++ R  +GG C ++G IPSKAL HS    M       F + G    FS      P ++   +K +S       G + +N+V    G G F     V V    G    +  K+IIIATGS       I     RI  S   L+L   P+KL++ GAG IG E  S+++ LG  V +V+    ++  +D EI
Sbjct:   20 AAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVRQIMQFNTNPMFRAIGEPRWFS-----FPDVLKSAEKVISKQVASRTGYYARNRVDLFFGTGSFADEQTVEVVCANGVVEKLVAKHIIIATGSRPYRPADIDFHHPRIYDSDTILSLGHTPRKLIIYGAGVIGCEYASIFSGLGVLVELVDNRDQLLSFLDSEI 218          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: STHA_PSEFL (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas fluorescens GN=sthA PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 5.323e-19
Identity = 67/204 (32.84%), Postives = 96/204 (47.06%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH--MYHEAMHSFASHGVK--FSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEI 804
            AA+ AA+ G K   ++ R  +GG C ++G IPSKAL HS    M       F + G    FS      P ++   +K +S       G + +N+V    G G F     V V    G    +  K+IIIATGS       I     RI  S   L+L   P+KL++ GAG IG E  S+++ LG  V +V+    ++  +D EI
Sbjct:   20 AAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVRQIMQFNTNPMFRAIGEPRWFS-----FPDVLKSAEKVISKQVASRTGYYARNRVDLFFGTGSFADEQTVEVVCANGVVEKLVAKHIIIATGSRPYRPADIDFHHPRIYDSDTILSLGHTPRKLIIYGAGVIGCEYASIFSGLGVLVELVDNRDQLLSFLDSEI 218          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: GSHR_CANGA (Glutathione reductase OS=Candida glabrata GN=GLR1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.951e-19
Identity = 64/191 (33.51%), Postives = 94/191 (49.21%), Query Frame = 1
Query:  214 KAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFA---SHGVKFS--SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDV---KSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVV 762
            +AA  G KT  IE + ALGGTC+NVGC+P K + ++S +     H+     +  V  S  S+  + P    ++D  +  L    E   KK  V  V G+ +F     V V   +    V     I++ATG      + +PG  +       S G   L E PKK+VV+GAGYIG+E+  V+  LGS+  +V
Sbjct:   34 RAASYGAKTLLIEGK-ALGGTCVNVGCVPKKVMWYASDLATRLTHAHEYGLAQNVPLSKESITFNWPEFKKKRDAYIHRLNGIYENNLKKEGVEVVFGWAKFNKDGNVEVTKHDNTTEVYSADRILVATGGKPVYPEKVPGFELG----TDSDGFFRLEEQPKKVVVVGAGYIGIELAGVFHGLGSDSHLV 219          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: GSHRC_PEA (Glutathione reductase, cytosolic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.951e-19
Identity = 62/212 (29.25%), Postives = 107/212 (50.47%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLE 831
            A +   +L       E  G +GGTC+  GC+P K L++ +  Y   +    + G + + +V+ +   ++ +K   ++ L    + L     V   +G G+  SP+EV V  ++G       K+I+IATGS  +  ++PG  +     ++S  AL+L E PK+ V++G GYI +E  S+W  +GS V +V      +   D E+R    R+LE
Sbjct:   48 AKVGICELPFHPISSETIGGVGGTCVIRGCVPKKILVYGAS-YGGELQDARNFGWELNENVDFNWKKLLQKKTDEINRLNGIYKRLLSNAGVKLFEGEGKIASPNEVEVTQLDGTKLSYSAKHILIATGSRAQRPNIPGQELG----ITSDEALSLEEFPKRAVILGGGYIAVEFASIWRGMGSSVNLVFRKELPLRGFDDEMRAVVARNLE 254          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: STHA_MARMS (Soluble pyridine nucleotide transhydrogenase OS=Marinomonas sp. (strain MWYL1) GN=sthA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.079e-19
Identity = 58/203 (28.57%), Postives = 103/203 (50.74%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE---VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEI 804
            AA+ AA+ G +   IE    +GG+C ++G IPSKAL H+     + + +F ++ +     E      P ++ + ++ +     G    + +N++    G G+F   + + V+T E G  +++ K ++IATGS       I     RI  S   L+L+  P+ L++ GAG IG E  S++  LG  V ++  A  ++  +D EI
Sbjct:   20 AAMSAAKAGKRVAVIEASSQVGGSCTHLGTIPSKALRHAV----KEIIAFNTNPMFRDIGEPRWFSFPKVLDRANRVIDKQVMGRTEYYARNRIDIYFGRGKFKDANTIEVNTYEKGPELLEAKKVVIATGSRPYRPANIDFSHPRIYCSDTILSLSHTPRSLIIYGAGVIGCEYASIFCGLGVRVELINPAKKLLSFLDDEI 218          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: MERA_SHEPU (Mercuric reductase OS=Shewanella putrefaciens GN=merA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.186e-18
Identity = 60/187 (32.09%), Postives = 102/187 (54.55%), Query Frame = 1
Query:  208 AIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRG-IEGLFKKNK-VTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVV 762
            AIKAA+ G K T IE    +GG C+NVGC+PSK L+ ++ +  +  ++  + G++  + ++    +  Q+   V  L     + + + N  ++ +KG+ +F + + + V   +G    V    I+IATGS     P   + E    +ST AL   E+P+ LVVIG+  + LE+   + RLGSEVT++
Sbjct:  110 AIKAAEGGAKVTLIEGADVIGGCCVNVGCVPSKILIRAAQLAQQQRNNPFT-GLENHAPQLSRALLTQQQTARVEELRAAKYQNILETNPALSLLKGWAQFKNANTLIVRKNDGTEQAVHADKILIATGSTPTIPPIDGLTETPYWTSTEALFAQELPQHLVVIGSSVVALEIAQAYRRLGSEVTIL 295          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: GSHR_PSEAE (Glutathione reductase OS=Pseudomonas aeruginosa GN=gor PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.186e-18
Identity = 59/213 (27.70%), Postives = 104/213 (48.83%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGS--DVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQ 837
            AA  AA  G +    E R  LGGTC+NVGC+P K L++ +H + E      ++G      + D   ++  K++ +  L      L   + VT ++G+   +    V VD           K+I++ATG    V  +PG    ++  ++S  A  L  +P++++V+G GYI +E  S++  LG+E T++      +   D  +R+  +  L K+
Sbjct:   19 AARFAAGFGARVAVAESR-YLGGTCVNVGCVPKKLLVYGAH-FSEDFEQARAYGWSAGEAQFDWATLIGNKNREIQRLNGIYRNLLVNSGVTLLEGHARLLDAHSVEVD-----GQRFSAKHILVATGGWPQVPDIPG----KEHAITSNEAFFLERLPRRVLVVGGGYIAVEFASIFNGLGAETTLLYRRDLFLRGFDRSVREHLRDELGKK 220          
The following BLAST results are available for this feature:
BLAST of FC917665 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
TRXR1_PIG5.323e-1928.29Thioredoxin reductase 1, cytoplasmic OS=Sus scrofa... [more]
STHA_PSEPK5.323e-1932.35Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PSEP15.323e-1932.35Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PSEFS5.323e-1932.84Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PSEFL5.323e-1932.84Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
GSHR_CANGA6.951e-1933.51Glutathione reductase OS=Candida glabrata GN=GLR1 ... [more]
GSHRC_PEA6.951e-1929.25Glutathione reductase, cytosolic OS=Pisum sativum ... [more]
STHA_MARMS9.079e-1928.57Soluble pyridine nucleotide transhydrogenase OS=Ma... [more]
MERA_SHEPU1.186e-1832.09Mercuric reductase OS=Shewanella putrefaciens GN=m... [more]
GSHR_PSEAE1.186e-1827.70Glutathione reductase OS=Pseudomonas aeruginosa GN... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA21AH09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA21AH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917665 ID=FC917665; Name=FC917665; organism=Citrus clementina; type=EST; length=861bp
AATCGATTGATTGGAGAAAAAGTTGATTGAAAAATGGTGATGGCAAGTCT
TGCAAGAAGAAAGGCGTACGTGCTGTCAAGGAATCTCTCGAACTCGTCGA
ATGGTAATGTTTTCAAGTACAGTTTCTCGCTTACAAGGGGCTTCGCTTCG
GCATCTGATGAGAACGACGTCGTCGTCATCGGAGGTGGACCTGGTGGTTA
CGTGGCCGCCATCAAGGCCGCCCAGCTTGGTCTCAAGACCACGTGCATCG
AGAAGCGTGGGGCCCTCGGCGGCACGTGCCTTAACGTCGGATGCATCCCC
TCTAAGGCACTTCTTCATTCTTCCCACATGTACCATGAAGCCATGCATTC
TTTTGCCAGCCATGGTGTAAAGTTTTCTTCTGTTGAAGTTGATTTGCCTG
CTATGATGGCCCAAAAAGATAAAGCTGTGTCTAATCTTACAAGAGGTATT
GAAGGTCTATTCAAGAAGAACAAGGTAACCTATGTGAAAGGATATGGCGA
GTTTATCTCCCCATCTGAGGTCTCTGTGGACACCATTGAAGGTGGAAACA
CTGTCGTGAAAGGCAAGAATATCATAATTGCTACTGGTTCTGACGTTAAG
TCTCTACCTGGGATCACCATTGATGAAAAGAGAATTGTGTCATCCACTGG
AGCTTTAGCATTGAATGAAGTTCCTAAGAAACTCGTGGTCATTGGGGCAG
GCTACATTGGGCTGGAGATGGGCTCAGTTTGGGCCAGGCTTGGTTCAGAG
GTCACTGTTGTTGAATTTGCAGCTGATATCGTCCCAAGCATGGATGGGGA
AATTCGCAAGCAATTTCAGCGTTCACTTGAGAAGCAGAAGATGAAATTCA
TGCTCAAAACT
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