FC917665

Overview
NameFC917665
Unique NameFC917665
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length861
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: STHA_PSE14 (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=sthA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.712e-17
Identity = 62/203 (30.54%), Postives = 97/203 (47.78%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE---VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEI 804
            AA+ AA+ G K   ++ R  +GG C ++G IPSKAL HS     + +  F ++ +  +  E      P ++   +  +S         + +N+V    G G F   + V+V    G    +    IIIATGS       I    KRI  S   L+L   P+KL++ GAG IG E  S+++ LG  V +V+    ++  +D EI
Sbjct:   20 AAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSV----KQIIQFNTNPMFRAIGEPRWFSFPDVLKNAEMVISKQVASRTSYYARNRVDVFFGTGSFADETSVNVVCSNGVVEKLVANQIIIATGSRPYRPADIDFSHKRIYDSDTILSLGHTPRKLIIYGAGVIGCEYASIFSGLGVLVELVDNRDQLLSFLDSEI 218          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: STHA_PHOPR (Soluble pyridine nucleotide transhydrogenase OS=Photobacterium profundum GN=sthA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.712e-17
Identity = 56/200 (28.00%), Postives = 91/200 (45.50%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEI 804
            AA+   + GL    IE+  ++GG C + G IPSKAL H+     E   +   +    SS+      ++      V+  TR  +G + +NK + + G   FI    V V   +    +      +IATGS      G+  D  R+  S   L L   P+ +++ GAG IG E  S++  LG +V ++     ++  +D EI
Sbjct:   24 AAMGLTKAGLNVAVIERENSVGGGCTHWGTIPSKALRHAVSRIIEYNQN-PLYCKNNSSLHSTFSQILGHAQDVVNKQTRMRQGFYDRNKCSLIFGEASFIDAHTVRVKNADNSTDLYSADKFVIATGSRPYHPEGVDFDHSRVYDSDSILQLEHDPRHIIIYGAGVIGSEYASIFRGLGVKVDLINTRHRLLEFLDNEI 222          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: STHA_PSEAE (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas aeruginosa GN=sthA PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.236e-17
Identity = 57/203 (28.08%), Postives = 96/203 (47.29%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE---VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEI 804
            AA+ A++ G K   ++ R  +GG C ++G IPSKAL HS     E    F ++ +     E      P ++   D+ +S       G + +N++    G   F+    V V T  G    +     +IATGS       I  +  R+  S   L+L+  P++L++ GAG IG E  S+++ LG  V +++    ++  +D EI
Sbjct:   20 AAMNASKYGRKLAVVDSRRVVGGNCTHLGTIPSKALRHSVKQIIE----FNTNPMFRQIGEPRWFSFPDVLKSADRVISKQVASRTGYYARNRIDMFTGTASFVDERTVEVVTPSGAVERLVADQFVIATGSRPYRPSDINFNHPRVYDSDTILSLSHTPRRLIIYGAGVIGCEYASIFSGLGVLVDLIDTRDQLLSFLDDEI 218          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: STHA_PSEAB (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=sthA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.236e-17
Identity = 57/203 (28.08%), Postives = 96/203 (47.29%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE---VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEI 804
            AA+ A++ G K   ++ R  +GG C ++G IPSKAL HS     E    F ++ +     E      P ++   D+ +S       G + +N++    G   F+    V V T  G    +     +IATGS       I  +  R+  S   L+L+  P++L++ GAG IG E  S+++ LG  V +++    ++  +D EI
Sbjct:   20 AAMNASKYGRKLAVVDSRRVVGGNCTHLGTIPSKALRHSVKQIIE----FNTNPMFRQIGEPRWFSFPDVLKSADRVISKQVASRTGYYARNRIDMFTGTASFVDERTVEVVTPSGAVERLVADQFVIATGSRPYRPSDINFNHPRVYDSDTILSLSHTPRRLIIYGAGVIGCEYASIFSGLGVLVDLIDTRDQLLSFLDDEI 218          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: STHA_PSEA8 (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas aeruginosa (strain LESB58) GN=sthA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.236e-17
Identity = 57/203 (28.08%), Postives = 96/203 (47.29%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE---VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEI 804
            AA+ A++ G K   ++ R  +GG C ++G IPSKAL HS     E    F ++ +     E      P ++   D+ +S       G + +N++    G   F+    V V T  G    +     +IATGS       I  +  R+  S   L+L+  P++L++ GAG IG E  S+++ LG  V +++    ++  +D EI
Sbjct:   20 AAMNASKYGRKLAVVDSRRVVGGNCTHLGTIPSKALRHSVKQIIE----FNTNPMFRQIGEPRWFSFPDVLKSADRVISKQVASRTGYYARNRIDMFTGTASFVDERTVEVVTPSGAVERLVADQFVIATGSRPYRPSDINFNHPRVYDSDTILSLSHTPRRLIIYGAGVIGCEYASIFSGLGVLVDLIDTRDQLLSFLDDEI 218          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: STHA_PSEA7 (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas aeruginosa (strain PA7) GN=sthA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.236e-17
Identity = 57/203 (28.08%), Postives = 96/203 (47.29%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE---VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEI 804
            AA+ A++ G K   ++ R  +GG C ++G IPSKAL HS     E    F ++ +     E      P ++   D+ +S       G + +N++    G   F+    V V T  G    +     +IATGS       I  +  R+  S   L+L+  P++L++ GAG IG E  S+++ LG  V +++    ++  +D EI
Sbjct:   20 AAMNASKYGRKLAVVDSRRVVGGNCTHLGTIPSKALRHSVKQIIE----FNTNPMFRQIGEPRWFSFPDVLKSADRVISKQVASRTGYYARNRIDMFTGTASFVDERTVEVVTPSGAVERLVADQFVIATGSRPYRPSDINFNHPRVYDSDTILSLSHTPRRLIIYGAGVIGCEYASIFSGLGVLVDLIDTRDQLLSFLDDEI 218          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: GSHRP_TOBAC (Glutathione reductase, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GOR PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.236e-17
Identity = 59/203 (29.06%), Postives = 93/203 (45.81%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSD--VKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIR 807
            A++   +L   T   +  G +GGTC+  GC+P K L+++S   HE   S             D   ++A K+  +  LT   + + K   VT ++G G+ + P  V VD       +   KNI+I+ G    +  +PG     +  + S  AL L   P K+ ++G GYI LE   ++  L SEV V      ++   D EIR
Sbjct:  103 ASVAVCELPFSTISSDSTGGVGGTCVLRGCVPKKLLVYASKYSHEFEESCGFGWNYDVEPRFDWSTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKVVDPHTVDVD-----GKLYSAKNILISVGGRPFIPDIPG----SEYAIDSDAALDLPTKPNKIAIVGGGYIALEFAGIFNGLKSEVHVFIRQKKVLRGFDEEIR 296          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: GSHR_CALJA (Glutathione reductase, mitochondrial OS=Callithrix jacchus GN=GSR PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.921e-17
Identity = 59/214 (27.57%), Postives = 106/214 (49.53%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS-----LPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLE 831
            +A +AA+LG +   +E    LGGTC+NVGC+P K + +++ ++ E +H    +G      + +   +  ++D  VS L    +    K  +  + G+  F S ++    TIE         +I+IATG    S     +PG ++     ++S G   L E+P + V++GAGYI +E+  + + LGS+ +++     ++ S D  I       LE
Sbjct:   79 SARRAAELGARAAVVESH-KLGGTCVNVGCVPKKVMWNTA-VHSEFLHDHGDYGFSSCEGKFNWRVIKEKRDTYVSRLNTIYQNNLTKAHIEIIHGHAVFTSDTK---PTIEVSGRKYTAPHILIATGGMPSSPHESQIPGASLG----ITSDGFFELEELPSRSVIVGAGYIAVEIAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELE 283          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: STHA_SERP5 (Soluble pyridine nucleotide transhydrogenase OS=Serratia proteamaculans (strain 568) GN=sthA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.814e-17
Identity = 53/200 (26.50%), Postives = 98/200 (49.00%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEI 804
            AA+   + G +   IE+   +GG C + G IPSKAL H+     E   +   +  +  ++    P ++   D  ++  TR  +G +++N+     G   FI  + VSV  ++G    ++  +I+IA GS   +   +  +  RI +S   L LN  P+ +++ GAG IG E  S++  L  +V ++     ++  +D E+
Sbjct:   21 AAMGLVKQGARVAVIERYNNVGGGCTHWGTIPSKALRHAVSRIIEFNQNPLYNNSR--TLSATFPDILRHADNVINQQTRMRQGFYERNQCKLFAGDARFIDANTVSVSYMDGTQDTIRADHIVIACGSRPYNPSSVDFNHPRIYNSDSILELNHEPRHVIIYGAGVIGCEYASIFRGLNVKVDLINTRDRLLAFLDQEM 218          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: STHA_PSEMY (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas mendocina (strain ymp) GN=sthA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.982e-17
Identity = 60/204 (29.41%), Postives = 94/204 (46.08%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH--MYHEAMHSFASHGVK--FSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEI 804
            AA+ AA+ G K   ++ R  +GG C ++G IPSKAL HS    M       F   G    FS      P ++   +K ++       G + +N++    G   F     V V  + G    +  K I+IATGS       +     RI  S   L+L   P++L++ GAG IG E  S+++ LG  V +++    ++  +D EI
Sbjct:   20 AAMNAAKAGRKVAVVDNRPLVGGNCTHLGTIPSKALRHSVRQIMQFNTNPMFRQIGEPRWFS-----FPDVLKSAEKVIAKQVTSRTGYYARNRIDTYFGTASFADEQTVEVVCLNGVVEKLVAKQIVIATGSRPYRPADVDFRHPRIYDSDTILSLGHTPRRLIIYGAGVIGCEYASIFSGLGVLVDLIDNRDQLLSFLDSEI 218          
The following BLAST results are available for this feature:
BLAST of FC917665 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
STHA_PSE141.712e-1730.54Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PHOPR1.712e-1728.00Soluble pyridine nucleotide transhydrogenase OS=Ph... [more]
STHA_PSEAE2.236e-1728.08Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PSEAB2.236e-1728.08Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PSEA82.236e-1728.08Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PSEA72.236e-1728.08Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
GSHRP_TOBAC2.236e-1729.06Glutathione reductase, chloroplastic (Fragment) OS... [more]
GSHR_CALJA2.921e-1727.57Glutathione reductase, mitochondrial OS=Callithrix... [more]
STHA_SERP53.814e-1726.50Soluble pyridine nucleotide transhydrogenase OS=Se... [more]
STHA_PSEMY4.982e-1729.41Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA21AH09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA21AH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917665 ID=FC917665; Name=FC917665; organism=Citrus clementina; type=EST; length=861bp
AATCGATTGATTGGAGAAAAAGTTGATTGAAAAATGGTGATGGCAAGTCT
TGCAAGAAGAAAGGCGTACGTGCTGTCAAGGAATCTCTCGAACTCGTCGA
ATGGTAATGTTTTCAAGTACAGTTTCTCGCTTACAAGGGGCTTCGCTTCG
GCATCTGATGAGAACGACGTCGTCGTCATCGGAGGTGGACCTGGTGGTTA
CGTGGCCGCCATCAAGGCCGCCCAGCTTGGTCTCAAGACCACGTGCATCG
AGAAGCGTGGGGCCCTCGGCGGCACGTGCCTTAACGTCGGATGCATCCCC
TCTAAGGCACTTCTTCATTCTTCCCACATGTACCATGAAGCCATGCATTC
TTTTGCCAGCCATGGTGTAAAGTTTTCTTCTGTTGAAGTTGATTTGCCTG
CTATGATGGCCCAAAAAGATAAAGCTGTGTCTAATCTTACAAGAGGTATT
GAAGGTCTATTCAAGAAGAACAAGGTAACCTATGTGAAAGGATATGGCGA
GTTTATCTCCCCATCTGAGGTCTCTGTGGACACCATTGAAGGTGGAAACA
CTGTCGTGAAAGGCAAGAATATCATAATTGCTACTGGTTCTGACGTTAAG
TCTCTACCTGGGATCACCATTGATGAAAAGAGAATTGTGTCATCCACTGG
AGCTTTAGCATTGAATGAAGTTCCTAAGAAACTCGTGGTCATTGGGGCAG
GCTACATTGGGCTGGAGATGGGCTCAGTTTGGGCCAGGCTTGGTTCAGAG
GTCACTGTTGTTGAATTTGCAGCTGATATCGTCCCAAGCATGGATGGGGA
AATTCGCAAGCAATTTCAGCGTTCACTTGAGAAGCAGAAGATGAAATTCA
TGCTCAAAACT
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