FC917665

Overview
NameFC917665
Unique NameFC917665
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length861
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: DLDH_PSEFL (Dihydrolipoyl dehydrogenase OS=Pseudomonas fluorescens GN=lpd PE=1 SV=3)

HSP 1 Score: 216.468 bits (550), Expect = 1.584e-55
Identity = 116/223 (52.02%), Postives = 151/223 (67.71%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEK------RGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFML 855
            AAI+AAQLGLKT CIEK      + ALGGTCLNVGCIPSKALL SS+ YHEA  +F  HG++   V +D+PAM+A+K   V NLT GI  LFK N VT  +G+G+ ++  +V V  ++G   V++ +N+IIA+GS    +P   + +  IV STGAL    VPKKL VIGAG IGLE+GSVWARLG+EVTV+E     +P+ D +I K+  + L KQ +   L
Sbjct:   19 AAIRAAQLGLKTACIEKYIGKEGKVALGGTCLNVGCIPSKALLDSSYKYHEAKEAFKVHGIEAKGVTIDVPAMVARKANIVKNLTGGIATLFKANGVTSFEGHGKLLANKQVEVTGLDGKTQVLEAENVIIASGSRPVEIPPAPLSDDIIVDSTGALEFQAVPKKLGVIGAGVIGLELGSVWARLGAEVTVLEALDKFLPAADEQIAKEALKVLTKQGLNIRL 241          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: DLDH_AZOVI (Dihydrolipoyl dehydrogenase OS=Azotobacter vinelandii PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.584e-55
Identity = 113/223 (50.67%), Postives = 152/223 (68.16%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEK------RGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFML 855
            AAIK+AQLGLKT  IEK      + ALGGTCLNVGCIPSKALL SS+ +HEA  SF  HG+    V +D+P M+A+KD+ V NLT G+  L K N VT  +G+G+ ++  +V V   +G + V+  +N+I+A+GS    +P   +D+  IV STGAL    VP KL VIGAG IGLE+GSVWARLG+EVTV+E     +P++D ++ K+ Q+ L KQ +K +L
Sbjct:   19 AAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPPAPVDQDVIVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILL 241          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: DLDH2_PSEAE (Dihydrolipoamide dehydrogenase OS=Pseudomonas aeruginosa GN=lpdG PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.069e-55
Identity = 116/223 (52.02%), Postives = 151/223 (67.71%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEK------RGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFML 855
            AAI+AAQLGLKT CIEK      + ALGGTCLNVGCIPSKALL SS+ YHEA  +F  HG++   V +D+PAM+A+K   V NLT GI  LFK N VT  +G+G+ ++  +V V  ++G   V++ +N+IIA+GS    +P   + +  IV STGAL    VPKKL VIGAG IGLE+GSVWARLG+EVTV+E     +P+ D +I K+  + L KQ +   L
Sbjct:   19 AAIRAAQLGLKTACIEKYIGKEGKVALGGTCLNVGCIPSKALLDSSYKYHEAKEAFKVHGIEAKGVTIDVPAMVARKANIVKNLTGGIATLFKANGVTSFEGHGKLLANKQVEVTGLDGKTQVLEAENVIIASGSRPVEIPPAPLTDDIIVDSTGALEFQAVPKKLGVIGAGVIGLELGSVWARLGAEVTVLEALDKFLPAADEQIAKEALKVLTKQGLNIRL 241          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: DLDH2_PSEPU (Dihydrolipoamide dehydrogenase OS=Pseudomonas putida GN=lpdG PE=1 SV=4)

HSP 1 Score: 207.223 bits (526), Expect = 9.610e-53
Identity = 112/223 (50.22%), Postives = 148/223 (66.37%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEK------RGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFML 855
            AAIKAAQLGLKT CIEK      + ALGGTCLNVGCIPSKALL SS  Y EA  SF  HG+    V++D+ AM+ +K   V NLT G+  LFK N VT ++G+G+ ++  +V V   +G   V++ +N+I+A+GS    +P   +D+  IV STGAL    VPK+L VIGAG IGLE+GSVWARLG+EVTV+E     + + D  + K+ Q++L KQ +   L
Sbjct:   19 AAIKAAQLGLKTACIEKYTDAEGKLALGGTCLNVGCIPSKALLDSSWKYKEAKESFNVHGISTGEVKMDVAAMVGRKAGIVKNLTGGVATLFKANGVTSIQGHGKLLAGKKVEVTKADGTTEVIEAENVILASGSRPIDIPPAPVDQNVIVDSTGALEFQAVPKRLGVIGAGVIGLELGSVWARLGAEVTVLEALDTFLMAADTAVSKEAQKTLTKQGLDIKL 241          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: DLDH_RALEH (Dihydrolipoyl dehydrogenase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=odhL PE=3 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 1.534e-50
Identity = 108/225 (48.00%), Postives = 137/225 (60.89%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKR--------GALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFML 855
            AAI+A QLGL   C E            LGGTCLNVGCIPSKALL SS  +    H    HG+    V+VD+  M+ +KD  V  +T+GIE LF+KNKVT +KGYG+F+  S      ++    VV  K +IIATGS  + LPGI +D   +  + GAL    VPKKL VIGAG IGLE+GSVW RLGS+VTV+E     + + D  + K+ Q+ L KQ +KF L
Sbjct:   19 AAIRAGQLGLNVACCEGNPYDDPKGEARLGGTCLNVGCIPSKALLASSEEFENVQHHLGDHGITVGDVKVDVAKMLKRKDDIVGKMTKGIEFLFRKNKVTLLKGYGKFVGKSAEGFQ-VDVAGEVVTAKQVIIATGSKARHLPGIKVDNDLVSDNEGALKFPAVPKKLGVIGAGVIGLELGSVWRRLGSDVTVLEALPAFLGAADEGVAKEAQKQLTKQGLKFSL 242          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: DLDH_VIBPA (Dihydrolipoyl dehydrogenase OS=Vibrio parahaemolyticus GN=lpd PE=3 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 1.486e-45
Identity = 102/219 (46.58%), Postives = 138/219 (63.01%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKT 861
            AA + A LGL+T  +E+   LGG CLNVGCIPSKALLH S +  EA  + A HGV F   + D+  +   K+K V+ LT G+ G+ K   VT V GYG+F  P+ + V+  EG +TVV   N I+A GS    LP I  ++ RI  ST AL L EVP+KL+++G G IGLEMG+V+  LGS+V VVE    ++P+ D +I K + + + K K K ML+T
Sbjct:   21 AAFRCADLGLETVLVERYSTLGGVCLNVGCIPSKALLHVSKVIEEAK-AMADHGVVFGEPQTDINKIRIWKEKVVNQLTGGLSGMAKMRNVTVVNGYGKFTGPNSILVEG-EGESTVVNFDNAIVAAGSRPIKLPFIPHEDPRIWDSTDALELKEVPEKLLIMGGGIIGLEMGTVYHSLGSKVEVVEMFDQVIPAADKDIVKVYTKRI-KDKFKLMLET 236          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: DLDH_HAEIN (Dihydrolipoyl dehydrogenase OS=Haemophilus influenzae GN=lpdA PE=3 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 1.178e-42
Identity = 98/219 (44.75%), Postives = 133/219 (60.73%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKT 861
            AA + A LGL+T  +E+   LGG CLNVGCIPSKALLH + +  EA H+   +G+ FS   ++L  + A K+  V+ LT G+ G+ K  KVT V+G   F     +     +G  T VK  N IIA GS    LP I  ++ RI  ST AL L EVPKKL+++G G IGLEMG+V+  LGSEV VVE    ++P+ D ++   + + +EK K K ML+T
Sbjct:   21 AAFRCADLGLETVIVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKHA-NKNGIYFSEPRIELDEVRAGKEAVVAKLTGGLAGMAKARKVTVVEGLATFTDSHTLVARDRDGNPTTVKFDNAIIAAGSRPVQLPFIPHEDPRIWDSTDALKLKEVPKKLLIMGGGIIGLEMGTVYNALGSEVEVVEMFDQVIPAADKDVVGIYTKQVEK-KFKLMLET 237          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: DLDH_VIBCH (Dihydrolipoyl dehydrogenase OS=Vibrio cholerae GN=lpd PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.009e-42
Identity = 96/219 (43.84%), Postives = 132/219 (60.27%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKT 861
            AA + A LGL T  IE+   LGG CLNVGCIPSKALLH + +  EA  +   HG+ F   + D+  +   K+K ++ LT G+ G+ K  KV  V GYG+F  P+ + VD  E G TVV   N I+A GS    LP I  ++ RI  ST AL L EVP KL+++G G IGLEM +V+  LGS++ VVE    ++P+ D ++ K + + + K K   ML+T
Sbjct:   21 AAFRCADLGLDTVIIERYNTLGGVCLNVGCIPSKALLHVAKVIEEAK-ALTEHGIVFGEPKTDIDKVRLWKEKVINQLTGGLAGMAKMRKVNVVNGYGKFTGPNTIEVDG-EEGKTVVTFDNAIVAAGSRPIKLPFIPHEDPRIWDSTDALELKEVPGKLLIMGGGIIGLEMATVYHSLGSKIDVVEMFDQLIPAADKDMVKVYTKRI-KDKFNLMLET 236          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: DLDH_SHIFL (Dihydrolipoyl dehydrogenase OS=Shigella flexneri GN=lpdA PE=3 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 2.009e-42
Identity = 96/219 (43.84%), Postives = 134/219 (61.19%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKT 861
            AA + A LGL+T  +E+   LGG CLNVGCIPSKALLH + +  EA  + A HG+ F   + D+  +   K+K ++ LT G+ G+ K  KV  V G G+F   + + V+  E G TV+   N IIA GS    LP I  ++ RI  ST AL L EVP++L+V+G G IGLEMG+V+  LGS++ VVE    ++P+ D +I K F + + K K   ML+T
Sbjct:   21 AAFRCADLGLETVIVERYNTLGGVCLNVGCIPSKALLHVAKVIEEAK-ALAEHGIVFGEPKTDIDKIRTWKEKVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTLEVEG-ENGKTVINFDNAIIAAGSRPIQLPFIPHEDPRIWDSTDALELKEVPERLLVMGGGIIGLEMGTVYHALGSQIDVVEMFDQVIPAADKDIVKVFTKRISK-KFNLMLET 236          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: DLDH_ECOLI (Dihydrolipoyl dehydrogenase OS=Escherichia coli (strain K12) GN=lpdA PE=1 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 2.009e-42
Identity = 96/219 (43.84%), Postives = 134/219 (61.19%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKT 861
            AA + A LGL+T  +E+   LGG CLNVGCIPSKALLH + +  EA  + A HG+ F   + D+  +   K+K ++ LT G+ G+ K  KV  V G G+F   + + V+  E G TV+   N IIA GS    LP I  ++ RI  ST AL L EVP++L+V+G G IGLEMG+V+  LGS++ VVE    ++P+ D +I K F + + K K   ML+T
Sbjct:   21 AAFRCADLGLETVIVERYNTLGGVCLNVGCIPSKALLHVAKVIEEAK-ALAEHGIVFGEPKTDIDKIRTWKEKVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTLEVEG-ENGKTVINFDNAIIAAGSRPIQLPFIPHEDPRIWDSTDALELKEVPERLLVMGGGIIGLEMGTVYHALGSQIDVVEMFDQVIPAADKDIVKVFTKRISK-KFNLMLET 236          
The following BLAST results are available for this feature:
BLAST of FC917665 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
DLDH_PSEFL1.584e-5552.02Dihydrolipoyl dehydrogenase OS=Pseudomonas fluores... [more]
DLDH_AZOVI1.584e-5550.67Dihydrolipoyl dehydrogenase OS=Azotobacter vinelan... [more]
DLDH2_PSEAE2.069e-5552.02Dihydrolipoamide dehydrogenase OS=Pseudomonas aeru... [more]
DLDH2_PSEPU9.610e-5350.22Dihydrolipoamide dehydrogenase OS=Pseudomonas puti... [more]
DLDH_RALEH1.534e-5048.00Dihydrolipoyl dehydrogenase OS=Ralstonia eutropha ... [more]
DLDH_VIBPA1.486e-4546.58Dihydrolipoyl dehydrogenase OS=Vibrio parahaemolyt... [more]
DLDH_HAEIN1.178e-4244.75Dihydrolipoyl dehydrogenase OS=Haemophilus influen... [more]
DLDH_VIBCH2.009e-4243.84Dihydrolipoyl dehydrogenase OS=Vibrio cholerae GN=... [more]
DLDH_SHIFL2.009e-4243.84Dihydrolipoyl dehydrogenase OS=Shigella flexneri G... [more]
DLDH_ECOLI2.009e-4243.84Dihydrolipoyl dehydrogenase OS=Escherichia coli (s... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA21AH09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA21AH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917665 ID=FC917665; Name=FC917665; organism=Citrus clementina; type=EST; length=861bp
AATCGATTGATTGGAGAAAAAGTTGATTGAAAAATGGTGATGGCAAGTCT
TGCAAGAAGAAAGGCGTACGTGCTGTCAAGGAATCTCTCGAACTCGTCGA
ATGGTAATGTTTTCAAGTACAGTTTCTCGCTTACAAGGGGCTTCGCTTCG
GCATCTGATGAGAACGACGTCGTCGTCATCGGAGGTGGACCTGGTGGTTA
CGTGGCCGCCATCAAGGCCGCCCAGCTTGGTCTCAAGACCACGTGCATCG
AGAAGCGTGGGGCCCTCGGCGGCACGTGCCTTAACGTCGGATGCATCCCC
TCTAAGGCACTTCTTCATTCTTCCCACATGTACCATGAAGCCATGCATTC
TTTTGCCAGCCATGGTGTAAAGTTTTCTTCTGTTGAAGTTGATTTGCCTG
CTATGATGGCCCAAAAAGATAAAGCTGTGTCTAATCTTACAAGAGGTATT
GAAGGTCTATTCAAGAAGAACAAGGTAACCTATGTGAAAGGATATGGCGA
GTTTATCTCCCCATCTGAGGTCTCTGTGGACACCATTGAAGGTGGAAACA
CTGTCGTGAAAGGCAAGAATATCATAATTGCTACTGGTTCTGACGTTAAG
TCTCTACCTGGGATCACCATTGATGAAAAGAGAATTGTGTCATCCACTGG
AGCTTTAGCATTGAATGAAGTTCCTAAGAAACTCGTGGTCATTGGGGCAG
GCTACATTGGGCTGGAGATGGGCTCAGTTTGGGCCAGGCTTGGTTCAGAG
GTCACTGTTGTTGAATTTGCAGCTGATATCGTCCCAAGCATGGATGGGGA
AATTCGCAAGCAATTTCAGCGTTCACTTGAGAAGCAGAAGATGAAATTCA
TGCTCAAAACT
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