FC917665

Overview
NameFC917665
Unique NameFC917665
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length861
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: STHA_CITK8 (Soluble pyridine nucleotide transhydrogenase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=sthA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.444e-13
Identity = 48/202 (23.76%), Postives = 95/202 (47.03%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHS--FASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEI 804
            AA+   + G +   IE+   +GG C + G IPSKAL H+     E   +  ++ H     S   D+   +   D  ++  TR  +G +++N    ++G   F+  + ++++  +G    +  +  +IA GS       +     RI  S   L+L+  P+ +++ GAG IG E  S++  +  +V ++     ++  +D E+
Sbjct:   21 AAMGLVKQGARVAVIERYHNVGGGCTHWGTIPSKALRHAVSRIIEFNQNPLYSDHSRLLRSSFADI---LNHADNVINQQTRMRQGFYERNHCEILQGNAHFVDENTLALECHDGTVETLTAEKFVIACGSRPYHPADVDFAHPRIYDSDSILSLHHEPRHVIIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEM 219          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: STHA_SHIB3 (Soluble pyridine nucleotide transhydrogenase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=sthA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.270e-12
Identity = 48/202 (23.76%), Postives = 93/202 (46.04%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHS--FASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEI 804
            AA+   + G +   IE+   +GG C + G IPSKAL H+     E   +  ++ H     S   D+   +   D  ++  TR  +G +++N    ++G   F+    + +D  +G    +  +  +IA GS       +     RI  S   L+++  P+ +++ GAG IG E  S++  +  +V ++     ++  +D E+
Sbjct:   21 AAMGLVKQGARVAVIERYQNVGGGCTHWGTIPSKALRHAVSRIIEFNQNPLYSDHSRLLRSSFADI---LNHADNVINQQTRMRQGFYERNHCEILQGNARFVDEHTLVLDCPDGSVETLTAEKFVIACGSRPYHPTDVDFTHPRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEM 219          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: STHA_KLEP3 (Soluble pyridine nucleotide transhydrogenase OS=Klebsiella pneumoniae (strain 342) GN=sthA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.658e-12
Identity = 48/202 (23.76%), Postives = 93/202 (46.04%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHS--FASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEI 804
            AA+   + G++   IE+   +GG C + G IPSKAL H+     E   +  ++ H     S   D+   +   D  ++  T   +G +++N    ++G   F+    ++++  +G    V  +  +IA GS       +     RI  S   L+L   P+ +++ GAG IG E  S++  +  +V ++     ++  +D E+
Sbjct:   21 AAMGLVKQGVRVAVIERYHNVGGGCTHWGTIPSKALRHAVSRIIEFNQNPLYSDHSRLLRSSFADI---LNHADSVINQQTHMRQGFYERNHCEILQGNAHFVDEHTLALECHDGTVETVTAEKFVIACGSRPYHPADVDFHHPRIYDSDSILSLQHEPRHVIIYGAGVIGCEYASIFRGMEVKVDLINTRDRLLAFLDQEM 219          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: TRXR_PLAF5 (Thioredoxin reductase OS=Plasmodium falciparum (isolate FCH-5) GN=TR PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.166e-12
Identity = 51/198 (25.76%), Postives = 94/198 (47.47%), Query Frame = 1
Query:  265 LGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGG---NTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKF 849
            +GGTC+NVGC+P K + ++ HM         ++G KF +++ D   ++      + +L        + +KV Y+ G  +    + VS   ++G       V GK I+IATG        +   ++  ++S    +L + P K +V+GA Y+ LE       LG +VTV    + ++   D +   + +  +E+Q + F
Sbjct:   84 IGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGWKFDNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLAKLKDKNTVSY-YLKGDLSKEETVTGKYILIATGCRPHIPDDVEGAKELSITSDDIFSLKKDPGKTLVVGASYVALECSGFLNSLGYDVTVA-VRSIVLRGFDQQCAVKVKLYMEEQGVMF 279          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: TRXR2_PLAF7 (Thioredoxin reductase 2 OS=Plasmodium falciparum (isolate 3D7) GN=trxr2 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.166e-12
Identity = 51/198 (25.76%), Postives = 94/198 (47.47%), Query Frame = 1
Query:  265 LGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGG---NTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKF 849
            +GGTC+NVGC+P K + ++ HM         ++G KF +++ D   ++      + +L        + +KV Y+ G  +    + VS   ++G       V GK I+IATG        +   ++  ++S    +L + P K +V+GA Y+ LE       LG +VTV    + ++   D +   + +  +E+Q + F
Sbjct:  160 IGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGWKFDNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLAKLKDKNTVSY-YLKGDLSKEETVTGKYILIATGCRPHIPDDVEGAKELSITSDDIFSLKKDPGKTLVVGASYVALECSGFLNSLGYDVTVA-VRSIVLRGFDQQCAVKVKLYMEEQGVMF 355          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: STHA_KLEP7 (Soluble pyridine nucleotide transhydrogenase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=sthA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.829e-12
Identity = 48/202 (23.76%), Postives = 92/202 (45.54%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHS--FASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEI 804
            AA+   + G +   IE+   +GG C + G IPSKAL H+     E   +  ++ H     S   D+   +   D  ++  T   +G +++N    ++G   F+    ++++  +G    V  +  +IA GS       +     RI  S   L+L   P+ +++ GAG IG E  S++  +  +V ++     ++  +D E+
Sbjct:   21 AAMGLVKQGARVAVIERYHNVGGGCTHWGTIPSKALRHAVSRIIEFNQNPLYSDHSRLLRSSFADI---LNHADSVINQQTHMRQGFYERNHCEILQGNAHFVDEHTLALECHDGTVETVTAEKFVIACGSRPYHPADVDFHHPRIYDSDSILSLQHEPRHVIIYGAGVIGCEYASIFRGMEVKVDLINTRDRLLAFLDQEM 219          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: STHA_ENT38 (Soluble pyridine nucleotide transhydrogenase OS=Enterobacter sp. (strain 638) GN=sthA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.829e-12
Identity = 47/202 (23.27%), Postives = 93/202 (46.04%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHS--FASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEI 804
            AA+   + G +   IE+   +GG C + G IPSKAL H+     E   +  ++ H     S   D+   +   D  ++  TR  +G +++N    ++G   F+    +++   +G    +  +  +IA GS       +     R+  S   L+L+  P+ +++ GAG IG E  S++  +  +V ++     ++  +D E+
Sbjct:   21 AAMGLVKQGARVAVIERYHNVGGGCTHWGTIPSKALRHAVSRIIEFNQNPLYSDHSRLLRSSFADI---LNHADTVINQQTRMRQGFYERNHCEILQGDAHFVDEHTLALKCHDGSVETITAEKFVIACGSRPYHPDDVDFSHPRVYDSDSILSLHHEPRHVLIYGAGVIGCEYASIFRGMEVKVDLINTRDRLLAFLDQEM 219          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: STHA_SODGM (Soluble pyridine nucleotide transhydrogenase OS=Sodalis glossinidius (strain morsitans) GN=sthA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.302e-12
Identity = 49/200 (24.50%), Postives = 86/200 (43.00%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEI 804
            AA+   + G +   IE+   +GG C + G IPSKAL  +     E   S   HG            ++   D+ ++  T   +G +++N      G   F+   +V +   +     +  +NI+IA GS       +  D  RI  S   L L   P  +++ GAG IG E  S++  +  +V ++     ++  +D E+
Sbjct:   21 AAMGLTKRGARVAIIERYDNVGGGCTHWGTIPSKALRQAVSRIIEINQS-PLHG-NTRLPHTGFSDILCHADQVINQQTHMRQGFYERNHCQIFTGEASFVDEHQVQIHYGDNTTETLSAENIVIACGSRPYQPQDVDFDHPRIYDSDSILDLKHDPHHVIIYGAGVIGCEYASIFRGMNVKVDLINTRDRLLAFLDQEM 218          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: STHA_HAMD5 (Soluble pyridine nucleotide transhydrogenase OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=sthA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.075e-11
Identity = 53/202 (26.24%), Postives = 87/202 (43.07%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNE--VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEI 804
            AA+  A+ G     +E+   +GG C + G IPSKAL H      E  +    +     S+      ++   +  +          +++N      G+  FI P ++ V   +G    +   +I+IATGS       I     RI  S   L L E   PK +++ GAG IG E  S++  LG +V ++     ++  +D EI
Sbjct:   21 AAMGLAKKGQSVAVVERYKNVGGGCTHSGTIPSKALRHVISRIIE-FNQNPLYSEHLQSIHPSFYHILQHANHVIRKQVSMRFDFYQRNHCHLFFGHARFIDPYKLEVIRPDGTLNTLSADHIVIATGSRPYHPESIDFTHPRIYDSDSILELKEEQQPKHIIIYGAGVIGCEYASIFRGLGVKVDLINTRNHLLAFLDQEI 221          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: TRXR2_BOVIN (Thioredoxin reductase 2, mitochondrial OS=Bos taurus GN=TXNRD2 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.834e-11
Identity = 54/193 (27.98%), Postives = 84/193 (43.52%), Query Frame = 1
Query:  208 AIKAAQLGLKTTCIE--------KRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVV 762
            A +AAQLG K   ++         R  LGGTC+NVGCIP K L+H + +    +     +G   +        +       V +L  G     +  KV Y      F+    V   +  G  T++  ++I+IATG   +    I    +  ++S     L E P K +V+GA Y+ LE   +   LG + TV+
Sbjct:   43 AKEAAQLGKKVAVLDYVEPSPQGTRWGLGGTCVNVGCIPKK-LMHQAALLGGMIRDAPHYGWGVAQAPHSWATLADAVQNHVKSLNWGHRIQLQDRKVKYFNVKASFVDTHTVCGVSKGGEETLLSAEHIVIATGGRPRYPTHIEGALEYGITSDDLFWLKESPGKTLVVGASYVALECAGLLTGLGLDTTVM 234          
The following BLAST results are available for this feature:
BLAST of FC917665 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
STHA_CITK87.444e-1323.76Soluble pyridine nucleotide transhydrogenase OS=Ci... [more]
STHA_SHIB31.270e-1223.76Soluble pyridine nucleotide transhydrogenase OS=Sh... [more]
STHA_KLEP31.658e-1223.76Soluble pyridine nucleotide transhydrogenase OS=Kl... [more]
TRXR_PLAF52.166e-1225.76Thioredoxin reductase OS=Plasmodium falciparum (is... [more]
TRXR2_PLAF72.166e-1225.76Thioredoxin reductase 2 OS=Plasmodium falciparum (... [more]
STHA_KLEP72.829e-1223.76Soluble pyridine nucleotide transhydrogenase OS=Kl... [more]
STHA_ENT382.829e-1223.27Soluble pyridine nucleotide transhydrogenase OS=En... [more]
STHA_SODGM6.302e-1224.50Soluble pyridine nucleotide transhydrogenase OS=So... [more]
STHA_HAMD51.075e-1126.24Soluble pyridine nucleotide transhydrogenase OS=Ha... [more]
TRXR2_BOVIN1.834e-1127.98Thioredoxin reductase 2, mitochondrial OS=Bos taur... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA21AH09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA21AH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917665 ID=FC917665; Name=FC917665; organism=Citrus clementina; type=EST; length=861bp
AATCGATTGATTGGAGAAAAAGTTGATTGAAAAATGGTGATGGCAAGTCT
TGCAAGAAGAAAGGCGTACGTGCTGTCAAGGAATCTCTCGAACTCGTCGA
ATGGTAATGTTTTCAAGTACAGTTTCTCGCTTACAAGGGGCTTCGCTTCG
GCATCTGATGAGAACGACGTCGTCGTCATCGGAGGTGGACCTGGTGGTTA
CGTGGCCGCCATCAAGGCCGCCCAGCTTGGTCTCAAGACCACGTGCATCG
AGAAGCGTGGGGCCCTCGGCGGCACGTGCCTTAACGTCGGATGCATCCCC
TCTAAGGCACTTCTTCATTCTTCCCACATGTACCATGAAGCCATGCATTC
TTTTGCCAGCCATGGTGTAAAGTTTTCTTCTGTTGAAGTTGATTTGCCTG
CTATGATGGCCCAAAAAGATAAAGCTGTGTCTAATCTTACAAGAGGTATT
GAAGGTCTATTCAAGAAGAACAAGGTAACCTATGTGAAAGGATATGGCGA
GTTTATCTCCCCATCTGAGGTCTCTGTGGACACCATTGAAGGTGGAAACA
CTGTCGTGAAAGGCAAGAATATCATAATTGCTACTGGTTCTGACGTTAAG
TCTCTACCTGGGATCACCATTGATGAAAAGAGAATTGTGTCATCCACTGG
AGCTTTAGCATTGAATGAAGTTCCTAAGAAACTCGTGGTCATTGGGGCAG
GCTACATTGGGCTGGAGATGGGCTCAGTTTGGGCCAGGCTTGGTTCAGAG
GTCACTGTTGTTGAATTTGCAGCTGATATCGTCCCAAGCATGGATGGGGA
AATTCGCAAGCAATTTCAGCGTTCACTTGAGAAGCAGAAGATGAAATTCA
TGCTCAAAACT
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