FC917665

Overview
NameFC917665
Unique NameFC917665
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length861
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: TRXR2_RAT (Thioredoxin reductase 2, mitochondrial OS=Rattus norvegicus GN=Txnrd2 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 2.395e-11
Identity = 56/194 (28.87%), Postives = 86/194 (44.33%), Query Frame = 1
Query:  208 AIKAAQLGLKTTCIE--------KRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSS-VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVV 762
            A +AAQLG K    +         +  LGGTC+NVGCIP K L+H + +    +     +G + +  V+ +  AM       V +L  G     +  KV Y      F++   V      G  T +  K+I+IATG   K    +    +  ++S     L E P K +V+GA Y+ LE       +G + TV+
Sbjct:   57 AKEAAQLGRKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKK-LMHQAALLGGMIRDAQHYGWEVAQPVQHNWKAMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVNEHTVHGVDKAGKVTQLSAKHIVIATGGRPKYPTQVKGALEHGITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTVM 249          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: TRXR2_HUMAN (Thioredoxin reductase 2, mitochondrial OS=Homo sapiens GN=TXNRD2 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 2.395e-11
Identity = 59/218 (27.06%), Postives = 90/218 (41.28%), Query Frame = 1
Query:  136 RGFASASDENDXXXXXXXXXXXXAAIKAAQLGLKTTCIE--------KRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSS-VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVV 762
            RG A+   + D             A +AAQLG K   ++         R  LGGTC+NVGCIP K L+H + +    +    ++G + +  V  D   M       V +L  G     +  KV Y      F+    V      G   ++   +IIIATG   +    I    +  ++S     L E P K +V+GA Y+ LE       +G + T++
Sbjct:   31 RGAAAGQRDYDLLVVGGGSGGLACAKEAAQLGRKVAVVDYVEPSPQGTRWGLGGTCVNVGCIPKK-LMHQAALLGGLIQDAPNYGWEVAQPVPHDWRKMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVCGVAKGGKEILLSADHIIIATGGRPRYPTHIEGALEYGITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTIM 247          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: TRXR2_DROME (Thioredoxin reductase 2, mitochondrial OS=Drosophila melanogaster GN=Trxr-2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.968e-11
Identity = 47/180 (26.11%), Postives = 84/180 (46.67%), Query Frame = 1
Query:  232 LKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHG--VKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGG-NTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVV 762
            +K T +  +  +GGTC+NVGCIP K L+H + +  EA+H   ++G  V  +++  D   ++      + ++        +  KV YV     F     +    + G  +  V  + +++A G   +  P I    +  ++S    +    P + +V+GAGY+GLE       LG E TV+
Sbjct:   64 VKPTPVGTKWGIGGTCVNVGCIPKK-LMHQASLLGEAVHEAVAYGWNVDDTNIRPDWRKLVRSVQNHIKSVNWVTRVDLRDKKVEYVNSMATFRDSHTIEYVAMPGAEHRQVTSEYVVVAVGGRPR-YPDIPGAVELGITSDDIFSYEREPGRTLVVGAGYVGLECACFLKGLGYEPTVM 241          
The following BLAST results are available for this feature:
BLAST of FC917665 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
TRXR2_RAT2.395e-1128.87Thioredoxin reductase 2, mitochondrial OS=Rattus n... [more]
TRXR2_HUMAN2.395e-1127.06Thioredoxin reductase 2, mitochondrial OS=Homo sap... [more]
TRXR2_DROME6.968e-1126.11Thioredoxin reductase 2, mitochondrial OS=Drosophi... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA21AH09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA21AH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917665 ID=FC917665; Name=FC917665; organism=Citrus clementina; type=EST; length=861bp
AATCGATTGATTGGAGAAAAAGTTGATTGAAAAATGGTGATGGCAAGTCT
TGCAAGAAGAAAGGCGTACGTGCTGTCAAGGAATCTCTCGAACTCGTCGA
ATGGTAATGTTTTCAAGTACAGTTTCTCGCTTACAAGGGGCTTCGCTTCG
GCATCTGATGAGAACGACGTCGTCGTCATCGGAGGTGGACCTGGTGGTTA
CGTGGCCGCCATCAAGGCCGCCCAGCTTGGTCTCAAGACCACGTGCATCG
AGAAGCGTGGGGCCCTCGGCGGCACGTGCCTTAACGTCGGATGCATCCCC
TCTAAGGCACTTCTTCATTCTTCCCACATGTACCATGAAGCCATGCATTC
TTTTGCCAGCCATGGTGTAAAGTTTTCTTCTGTTGAAGTTGATTTGCCTG
CTATGATGGCCCAAAAAGATAAAGCTGTGTCTAATCTTACAAGAGGTATT
GAAGGTCTATTCAAGAAGAACAAGGTAACCTATGTGAAAGGATATGGCGA
GTTTATCTCCCCATCTGAGGTCTCTGTGGACACCATTGAAGGTGGAAACA
CTGTCGTGAAAGGCAAGAATATCATAATTGCTACTGGTTCTGACGTTAAG
TCTCTACCTGGGATCACCATTGATGAAAAGAGAATTGTGTCATCCACTGG
AGCTTTAGCATTGAATGAAGTTCCTAAGAAACTCGTGGTCATTGGGGCAG
GCTACATTGGGCTGGAGATGGGCTCAGTTTGGGCCAGGCTTGGTTCAGAG
GTCACTGTTGTTGAATTTGCAGCTGATATCGTCCCAAGCATGGATGGGGA
AATTCGCAAGCAATTTCAGCGTTCACTTGAGAAGCAGAAGATGAAATTCA
TGCTCAAAACT
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