FC917665

Overview
NameFC917665
Unique NameFC917665
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length861
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: DLDH_ECOL6 (Dihydrolipoyl dehydrogenase OS=Escherichia coli O6 GN=lpdA PE=3 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 2.009e-42
Identity = 96/219 (43.84%), Postives = 134/219 (61.19%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKT 861
            AA + A LGL+T  +E+   LGG CLNVGCIPSKALLH + +  EA  + A HG+ F   + D+  +   K+K ++ LT G+ G+ K  KV  V G G+F   + + V+  E G TV+   N IIA GS    LP I  ++ RI  ST AL L EVP++L+V+G G IGLEMG+V+  LGS++ VVE    ++P+ D +I K F + + K K   ML+T
Sbjct:   21 AAFRCADLGLETVIVERYNTLGGVCLNVGCIPSKALLHVAKVIEEAK-ALAEHGIVFGEPKTDIDKIRTWKEKVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTLEVEG-ENGKTVINFDNAIIAAGSRPIQLPFIPHEDPRIWDSTDALELKEVPERLLVMGGGIIGLEMGTVYHALGSQIDVVEMFDQVIPAADKDIVKVFTKRISK-KFNLMLET 236          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: DLDH_ECO57 (Dihydrolipoyl dehydrogenase OS=Escherichia coli O157:H7 GN=lpdA PE=3 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 2.009e-42
Identity = 96/219 (43.84%), Postives = 134/219 (61.19%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKT 861
            AA + A LGL+T  +E+   LGG CLNVGCIPSKALLH + +  EA  + A HG+ F   + D+  +   K+K ++ LT G+ G+ K  KV  V G G+F   + + V+  E G TV+   N IIA GS    LP I  ++ RI  ST AL L EVP++L+V+G G IGLEMG+V+  LGS++ VVE    ++P+ D +I K F + + K K   ML+T
Sbjct:   21 AAFRCADLGLETVIVERYNTLGGVCLNVGCIPSKALLHVAKVIEEAK-ALAEHGIVFGEPKTDIDKIRTWKEKVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTLEVEG-ENGKTVINFDNAIIAAGSRPIQLPFIPHEDPRIWDSTDALELKEVPERLLVMGGGIIGLEMGTVYHALGSQIDVVEMFDQVIPAADKDIVKVFTKRISK-KFNLMLET 236          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: DLDH_STAAW (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain MW2) GN=pdhD PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.844e-42
Identity = 99/216 (45.83%), Postives = 136/216 (62.96%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFM 852
            AAI+AAQLG K T +EK G LGG CLNVGCIPSKALLH+SH + EA HS  + GV   SV ++   +   K   V+ LT G+EGL K NKV  VKG   F+  + + V   +   T    KN IIATGS    +P      KR++ STGAL L EVP KLVV+G GYIG E+G+ +A  GSEVT++E A DI+   + ++ +  ++ ++++ ++ +
Sbjct:   24 AAIRAAQLGQKVTIVEK-GNLGGVCLNVGCIPSKALLHASHRFVEAQHS-ENLGVIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAYFVDNNSLRVMDEKSAQTY-NFKNAIIATGSRPIEIPNFKFG-KRVIDSTGALNLQEVPGKLVVVGGGYIGSELGTAFANFGSEVTILEGAKDILGGFEKQMTQPVKKGMKEKGVEIV 235          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: DLDH_STAAU (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus GN=pdhD PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.844e-42
Identity = 99/216 (45.83%), Postives = 136/216 (62.96%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFM 852
            AAI+AAQLG K T +EK G LGG CLNVGCIPSKALLH+SH + EA HS  + GV   SV ++   +   K   V+ LT G+EGL K NKV  VKG   F+  + + V   +   T    KN IIATGS    +P      KR++ STGAL L EVP KLVV+G GYIG E+G+ +A  GSEVT++E A DI+   + ++ +  ++ ++++ ++ +
Sbjct:   24 AAIRAAQLGQKVTIVEK-GNLGGVCLNVGCIPSKALLHASHRFVEAQHS-ENLGVIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAYFVDNNSLRVMDEKSAQTY-NFKNAIIATGSRPIEIPNFKFG-KRVIDSTGALNLQEVPGKLVVVGGGYIGSELGTAFANFGSEVTILEGAKDILGGFEKQMTQPVKKGMKEKGVEIV 235          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: DLDH_STAAS (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain MSSA476) GN=pdhD PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.844e-42
Identity = 99/216 (45.83%), Postives = 136/216 (62.96%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFM 852
            AAI+AAQLG K T +EK G LGG CLNVGCIPSKALLH+SH + EA HS  + GV   SV ++   +   K   V+ LT G+EGL K NKV  VKG   F+  + + V   +   T    KN IIATGS    +P      KR++ STGAL L EVP KLVV+G GYIG E+G+ +A  GSEVT++E A DI+   + ++ +  ++ ++++ ++ +
Sbjct:   24 AAIRAAQLGQKVTIVEK-GNLGGVCLNVGCIPSKALLHASHRFVEAQHS-ENLGVIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAYFVDNNSLRVMDEKSAQTY-NFKNAIIATGSRPIEIPNFKFG-KRVIDSTGALNLQEVPGKLVVVGGGYIGSELGTAFANFGSEVTILEGAKDILGGFEKQMTQPVKKGMKEKGVEIV 235          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: DLDH_STAAR (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain MRSA252) GN=pdhD PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.844e-42
Identity = 99/216 (45.83%), Postives = 136/216 (62.96%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFM 852
            AAI+AAQLG K T +EK G LGG CLNVGCIPSKALLH+SH + EA HS  + GV   SV ++   +   K   V+ LT G+EGL K NKV  VKG   F+  + + V   +   T    KN IIATGS    +P      KR++ STGAL L EVP KLVV+G GYIG E+G+ +A  GSEVT++E A DI+   + ++ +  ++ ++++ ++ +
Sbjct:   24 AAIRAAQLGQKVTIVEK-GNLGGVCLNVGCIPSKALLHASHRFVEAQHS-ENLGVIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAYFVDNNSLRVMDEKSAQTY-NFKNAIIATGSRPIEIPNFKFG-KRVIDSTGALNLQEVPGKLVVVGGGYIGSELGTAFANFGSEVTILEGAKDILGGFEKQMTQPVKKGMKEKGVEIV 235          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: DLDH_STAAN (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain N315) GN=pdhD PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.844e-42
Identity = 99/216 (45.83%), Postives = 136/216 (62.96%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFM 852
            AAI+AAQLG K T +EK G LGG CLNVGCIPSKALLH+SH + EA HS  + GV   SV ++   +   K   V+ LT G+EGL K NKV  VKG   F+  + + V   +   T    KN IIATGS    +P      KR++ STGAL L EVP KLVV+G GYIG E+G+ +A  GSEVT++E A DI+   + ++ +  ++ ++++ ++ +
Sbjct:   24 AAIRAAQLGQKVTIVEK-GNLGGVCLNVGCIPSKALLHASHRFVEAQHS-ENLGVIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAYFVDNNSLRVMDEKSAQTY-NFKNAIIATGSRPIEIPNFKFG-KRVIDSTGALNLQEVPGKLVVVGGGYIGSELGTAFANFGSEVTILEGAKDILGGFEKQMTQPVKKGMKEKGVEIV 235          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: DLDH_STAAM (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pdhD PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.844e-42
Identity = 99/216 (45.83%), Postives = 136/216 (62.96%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFM 852
            AAI+AAQLG K T +EK G LGG CLNVGCIPSKALLH+SH + EA HS  + GV   SV ++   +   K   V+ LT G+EGL K NKV  VKG   F+  + + V   +   T    KN IIATGS    +P      KR++ STGAL L EVP KLVV+G GYIG E+G+ +A  GSEVT++E A DI+   + ++ +  ++ ++++ ++ +
Sbjct:   24 AAIRAAQLGQKVTIVEK-GNLGGVCLNVGCIPSKALLHASHRFVEAQHS-ENLGVIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAYFVDNNSLRVMDEKSAQTY-NFKNAIIATGSRPIEIPNFKFG-KRVIDSTGALNLQEVPGKLVVVGGGYIGSELGTAFANFGSEVTILEGAKDILGGFEKQMTQPVKKGMKEKGVEIV 235          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: DLDH_STAAC (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain COL) GN=pdhD PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.844e-42
Identity = 99/216 (45.83%), Postives = 136/216 (62.96%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFM 852
            AAI+AAQLG K T +EK G LGG CLNVGCIPSKALLH+SH + EA HS  + GV   SV ++   +   K   V+ LT G+EGL K NKV  VKG   F+  + + V   +   T    KN IIATGS    +P      KR++ STGAL L EVP KLVV+G GYIG E+G+ +A  GSEVT++E A DI+   + ++ +  ++ ++++ ++ +
Sbjct:   24 AAIRAAQLGQKVTIVEK-GNLGGVCLNVGCIPSKALLHASHRFVEAQHS-ENLGVIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAYFVDNNSLRVMDEKSAQTY-NFKNAIIATGSRPIEIPNFKFG-KRVIDSTGALNLQEVPGKLVVVGGGYIGSELGTAFANFGSEVTILEGAKDILGGFEKQMTQPVKKGMKEKGVEIV 235          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: DLDH1_BACST (Dihydrolipoyl dehydrogenase OS=Bacillus stearothermophilus GN=pdhD PE=1 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 5.844e-42
Identity = 99/211 (46.92%), Postives = 130/211 (61.61%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQ 837
            AAI+AAQLG K T +EK G LGG CLNVGCIPSKAL+ +SH Y +A HS    G+K  +V +D   +   K   V  LT G+EGL K NKV  VKG   F+  + V V   +   T    KN IIATGS    LP       RI+ STGAL L EVPK LVVIG GYIG+E+G+ +A  G++VT++E A +I+   + ++    ++ L+K+
Sbjct:   24 AAIRAAQLGQKVTIVEK-GNLGGVCLNVGCIPSKALISASHRYEQAKHS-EEMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTF-KNAIIATGSRPIELPNFKFSN-RILDSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKK 230          
The following BLAST results are available for this feature:
BLAST of FC917665 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
DLDH_ECOL62.009e-4243.84Dihydrolipoyl dehydrogenase OS=Escherichia coli O6... [more]
DLDH_ECO572.009e-4243.84Dihydrolipoyl dehydrogenase OS=Escherichia coli O1... [more]
DLDH_STAAW5.844e-4245.83Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH_STAAU5.844e-4245.83Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH_STAAS5.844e-4245.83Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH_STAAR5.844e-4245.83Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH_STAAN5.844e-4245.83Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH_STAAM5.844e-4245.83Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH_STAAC5.844e-4245.83Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH1_BACST5.844e-4246.92Dihydrolipoyl dehydrogenase OS=Bacillus stearother... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA21AH09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA21AH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917665 ID=FC917665; Name=FC917665; organism=Citrus clementina; type=EST; length=861bp
AATCGATTGATTGGAGAAAAAGTTGATTGAAAAATGGTGATGGCAAGTCT
TGCAAGAAGAAAGGCGTACGTGCTGTCAAGGAATCTCTCGAACTCGTCGA
ATGGTAATGTTTTCAAGTACAGTTTCTCGCTTACAAGGGGCTTCGCTTCG
GCATCTGATGAGAACGACGTCGTCGTCATCGGAGGTGGACCTGGTGGTTA
CGTGGCCGCCATCAAGGCCGCCCAGCTTGGTCTCAAGACCACGTGCATCG
AGAAGCGTGGGGCCCTCGGCGGCACGTGCCTTAACGTCGGATGCATCCCC
TCTAAGGCACTTCTTCATTCTTCCCACATGTACCATGAAGCCATGCATTC
TTTTGCCAGCCATGGTGTAAAGTTTTCTTCTGTTGAAGTTGATTTGCCTG
CTATGATGGCCCAAAAAGATAAAGCTGTGTCTAATCTTACAAGAGGTATT
GAAGGTCTATTCAAGAAGAACAAGGTAACCTATGTGAAAGGATATGGCGA
GTTTATCTCCCCATCTGAGGTCTCTGTGGACACCATTGAAGGTGGAAACA
CTGTCGTGAAAGGCAAGAATATCATAATTGCTACTGGTTCTGACGTTAAG
TCTCTACCTGGGATCACCATTGATGAAAAGAGAATTGTGTCATCCACTGG
AGCTTTAGCATTGAATGAAGTTCCTAAGAAACTCGTGGTCATTGGGGCAG
GCTACATTGGGCTGGAGATGGGCTCAGTTTGGGCCAGGCTTGGTTCAGAG
GTCACTGTTGTTGAATTTGCAGCTGATATCGTCCCAAGCATGGATGGGGA
AATTCGCAAGCAATTTCAGCGTTCACTTGAGAAGCAGAAGATGAAATTCA
TGCTCAAAACT
back to top