FC917665

Overview
NameFC917665
Unique NameFC917665
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length861
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: DLDH3_HALMA (Dihydrolipoyl dehydrogenase 3 OS=Haloarcula marismortui GN=lpdA3 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.821e-35
Identity = 93/217 (42.86%), Postives = 132/217 (60.83%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSV-DTIEG-GNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKF 849
            AAI+AAQL L  T +EK G  GG CLN GCIPSKAL+H S +  EA  +    G+ ++   V L  M+  KD  V  LT GIE L     V  +KG  EF   ++V +    EG G+  +K +N IIATGS    +PG   +++RIVSS GAL  + VP +LV++GAGYIG+E+ +V++RLGS+V+V+E     +PS + +I    ++  E+  + F
Sbjct:   24 AAIRAAQLALDVTLVEK-GEYGGACLNRGCIPSKALIHGSKLASEAGQA-EELGI-YADPTVALDEMINWKDGVVDQLTSGIEQLCTAAGVNLLKGTAEFADENKVRIIHQGEGQGSESLKFENCIIATGSRPIEIPGFGFEDERIVSSDGALNFDTVPDELVIVGAGYIGMELATVYSRLGSDVSVIEMLEQALPSYEEDIASIVRKRAERLGVDF 237          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: DLDH1_PSEPU (Dihydrolipoyl dehydrogenase OS=Pseudomonas putida GN=lpdV PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.180e-34
Identity = 84/212 (39.62%), Postives = 128/212 (60.38%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASH--GVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEK 834
            AAI+A QLG+ T  +E + ALGGTCLN+GCIPSKAL+H +  +H+A         G+  +S  +D+   +A KD  V  LT G+  L KK+ V  V G+ + +   +V VD        ++ +++++ATGS    LP + +    ++SST ALA   +P+ LVV+G GYIGLE+G  + +LG++V+VVE    I+P+ D E+      SL+K
Sbjct:   21 AAIRAGQLGIPTVLVEGQ-ALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVD-----GQRIQCEHLLLATGSSSVELPMLPLGGP-VISSTEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKK 225          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: DLDH_HALSA (Dihydrolipoyl dehydrogenase OS=Halobacterium salinarium GN=lpdA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.629e-34
Identity = 85/219 (38.81%), Postives = 132/219 (60.27%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGN----TVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKF 849
            AAI+A QLGL  T +EK  A GGTCLN GCIPSKA++ +S + HEA H+    GV ++  +VD+  M+  KD  V  LT G+E L K N V  ++G  EF    ++ V  + GG+      ++ ++ I++TGS    +PG    +  ++ S  ALA+ E+P  +V++G GYIG+E+ +V+A+LG +VTVVE    I+P    +I +  ++  E+  + F
Sbjct:   24 AAIRAGQLGLDVTLVEK-DAYGGTCLNYGCIPSKAMITASGVAHEAGHA-EEMGV-YADPDVDVAEMVDWKDGVVDQLTGGVEKLCKANGVNLIEGRAEFAGSDKLRV--VHGGDGQGSETIEYEHAIVSTGSRPIEVPGFDFGDDPVLDSRQALAMAELPSSMVIVGGGYIGMELSTVFAKLGVDVTVVEMLDGILPQYGDDIARPVRQRAEELGIDF 237          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: DLDH_CHLTE (Dihydrolipoyl dehydrogenase OS=Chlorobium tepidum GN=lpd PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.650e-34
Identity = 81/210 (38.57%), Postives = 124/210 (59.05%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEK 834
            AAI AA+ GLKT CI ++  LGG C+N GCIP+KALL S+ ++  A +   + GV   +V  DL   + +        ++G+  L KK  V  + G       + V V   +G   ++  KNII+ATGS  + +PG+  D K+I++S  AL L EVPK ++V+G G IG+EM   +A+ GS+VT+VE    ++P+ + E+ +  +RS EK
Sbjct:   25 AAIHAARYGLKT-CIVEKAVLGGVCVNWGCIPTKALLRSAEVFDLAKNP-ETFGVNVGNVSFDLAQAVKRSRNVALKSSKGVAYLLKKAAVEVLAGEAVLTGGAGVMVTMPDGSVRMLGAKNIIVATGSTPRVIPGLEPDGKKIITSREALILKEVPKSMIVVGGGAIGVEMAWFYAKAGSKVTIVELMPRMLPAEEAEVSEALKRSFEK 232          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: DLDH_HALVO (Dihydrolipoyl dehydrogenase OS=Halobacterium volcanii GN=lpdA PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.704e-33
Identity = 86/212 (40.57%), Postives = 130/212 (61.32%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSV-DTIEG-GNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEK 834
            AAI+AAQ G+ TT +EK  A GGTCLN GCIPSKAL+  +++ HEA ++    G+    V VD+  +   K   V  LT G+E L K N V  V+G   F   + V +    EG G+  ++ ++ IIATGS V  +PG    ++ + SS  AL  + VP++LVV+G GYIG+E+ + +A+LG++VTVVE   DI+P  + ++ +  ++  E+
Sbjct:   24 AAIRAAQNGIDTTLVEK-DAYGGTCLNYGCIPSKALITGANLAHEAGNA-EEMGIHADPV-VDMSQLRDWKSGVVDQLTGGVEKLCKANGVNLVEGTARFKDENAVRIAHGGEGQGSETIEFEHCIIATGSRVIQIPGFDFGDEPVWSSRDALEADTVPERLVVVGGGYIGMELSTTFAKLGADVTVVEMLDDILPGYESDVARVVRKRAEE 232          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: DLDH_BUCBP (Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=lpdA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.907e-33
Identity = 76/208 (36.54%), Postives = 126/208 (60.58%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSL 828
            AA + + LGL    IE+  +LGG CLNVGCIPSK LLH + +  + +   +  G+ F  ++++L  +   + K + + + GI  L +K  V  + GY +F+  + + V   E  + VV    I+IATGS  K L  I  D+ RI +S+ A+++  +PKKL++IG G IGLEM ++++ LGS V +++ + DI+P +D ++   F+RS+
Sbjct:   22 AAFRCSDLGLNVVLIEQYYSLGGVCLNVGCIPSKYLLHIAKVIKD-VKKLSRIGISFEKLDINLKEIQCNQKKIIESFSSGISNLARKRNVRIIFGYAKFLDANSIFVQG-EHDSYVVSFNKIVIATGSLSKKLSYIPYDDIRIWNSSFAVSIPSIPKKLLIIGGGIIGLEMATIYSALGSNVDIIDNSHDILPHLDRDVIDIFKRSV 227          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: DLDH_BUCAI (Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=lpdA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.797e-33
Identity = 82/219 (37.44%), Postives = 125/219 (57.08%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKT 861
            AA + A LGL T  IE+   LGG CLNVGCIPSK LLH + +  EA     + GV F+  ++D+  +   K   V+ LT G+  + KK K+   +G+  F +   + V   E   T+    N IIATGS    +P I  D+ RI  ST AL+L ++P   ++IG+G IGLEM ++++ LGS+V +++     +P +D +I   +++S+  Q+   ML T
Sbjct:   21 AAFRCADLGLDTVLIERYDKLGGVCLNVGCIPSKTLLHIAKVIKEAKELHKT-GVSFNKPDIDIKKIKNWKQHIVNKLTDGLSSMRKKRKIRIFQGHAIFETDKSLCVTNTEDKFTIFFD-NAIIATGSKPIKIPSIPHDDIRIWDSTDALSLKKIPNNFLIIGSGIIGLEMATIYSALGSKVDIIDRFNHFLPVIDEDISSIYKKSI-NQQFNLMLNT 236          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: DLDH_CHLP8 (Dihydrolipoyl dehydrogenase OS=Chlorobaculum parvum (strain NCIB 8327) GN=lpd PE=3 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 4.959e-33
Identity = 75/210 (35.71%), Postives = 125/210 (59.52%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEK 834
            AA+ AA+ G+K  C+ ++ +LGG C+N GCIP+KALL S+ +Y  A +  +  GV  S +  DL   + +  K     ++G+E + KK KV   +G         V V   +G    ++  NII+ATG+  + +PG+  D K+I++S  AL L +VP+ ++V+G G IG+EM   +A+ G++VT+VE    ++P+ + E+ +  +RS EK
Sbjct:   25 AALHAARHGMKV-CLVEKASLGGVCVNWGCIPTKALLRSAEVYDLAKNP-SEFGVNVSELSFDLAQAVKRSRKVSLKSSKGVEFMLKKAKVEVWRGEAVLTGSKGVKVTAEDGSERSLEAANIIVATGAQPRVIPGLEPDGKKIITSREALILKDVPESMIVVGGGAIGVEMAWFYAKAGAKVTIVELMPRLLPAEEAEVSEALKRSFEK 232          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: DLDH_BUCAP (Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=lpdA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.959e-33
Identity = 82/219 (37.44%), Postives = 130/219 (59.36%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKT 861
            AA + A LGL+T  IE +  LGG CLNVGCIPSK+LLH + +  +A    +  GV F+   +D+  +   K+K +  LT G+  + +K KV  V+G   F +   V V   +   T+   K+ IIATGS    +P +  ++ RI +ST AL+L  +P + ++IG G IGLEM ++++ LGS+V +V+     +PS+D +I   + +S+ K++ K +L T
Sbjct:   21 AAFRCADLGLETVLIEHQERLGGVCLNVGCIPSKSLLHIAKIIKDASE-LSESGVFFNKPIIDIKKINNWKEKIIKKLTTGLSNMGEKRKVRIVQGKALFNTDHSVLVKNKKNDFTIFF-KHAIIATGSKPIKIPSLPNEDNRIWNSTDALSLKSIPNRFLIIGGGIIGLEMATIYSALGSKVDIVDRFNAFLPSVDKDITDIYIKSI-KKRFKLLLNT 236          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: DLDH_MYCTU (Dihydrolipoyl dehydrogenase OS=Mycobacterium tuberculosis GN=lpd PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 8.458e-33
Identity = 79/219 (36.07%), Postives = 118/219 (53.88%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKT 861
            AAI+AAQLGL T  +E +   GG CLNVGCIPSKALL ++ + H       + G+    V  D      +  K       G+  L KKNK+T + GYG F   + + VD  +GG   V   N IIATGS  + +PG ++    +V+    +   E+PK +++ GAG IG+E G V    G +VT+VEF    +P+ D ++ K+ ++  +K  +  +  T
Sbjct:   18 AAIRAAQLGLSTAIVEPK-YWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGIS-GEVTFDYGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSL-SANVVTYEEQILSRELPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTILTAT 233          
The following BLAST results are available for this feature:
BLAST of FC917665 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
DLDH3_HALMA1.821e-3542.86Dihydrolipoyl dehydrogenase 3 OS=Haloarcula marism... [more]
DLDH1_PSEPU1.180e-3439.62Dihydrolipoyl dehydrogenase OS=Pseudomonas putida ... [more]
DLDH_HALSA2.629e-3438.81Dihydrolipoyl dehydrogenase OS=Halobacterium salin... [more]
DLDH_CHLTE7.650e-3438.57Dihydrolipoyl dehydrogenase OS=Chlorobium tepidum ... [more]
DLDH_HALVO1.704e-3340.57Dihydrolipoyl dehydrogenase OS=Halobacterium volca... [more]
DLDH_BUCBP2.907e-3336.54Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola... [more]
DLDH_BUCAI3.797e-3337.44Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola... [more]
DLDH_CHLP84.959e-3335.71Dihydrolipoyl dehydrogenase OS=Chlorobaculum parvu... [more]
DLDH_BUCAP4.959e-3337.44Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola... [more]
DLDH_MYCTU8.458e-3336.07Dihydrolipoyl dehydrogenase OS=Mycobacterium tuber... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA21AH09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA21AH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917665 ID=FC917665; Name=FC917665; organism=Citrus clementina; type=EST; length=861bp
AATCGATTGATTGGAGAAAAAGTTGATTGAAAAATGGTGATGGCAAGTCT
TGCAAGAAGAAAGGCGTACGTGCTGTCAAGGAATCTCTCGAACTCGTCGA
ATGGTAATGTTTTCAAGTACAGTTTCTCGCTTACAAGGGGCTTCGCTTCG
GCATCTGATGAGAACGACGTCGTCGTCATCGGAGGTGGACCTGGTGGTTA
CGTGGCCGCCATCAAGGCCGCCCAGCTTGGTCTCAAGACCACGTGCATCG
AGAAGCGTGGGGCCCTCGGCGGCACGTGCCTTAACGTCGGATGCATCCCC
TCTAAGGCACTTCTTCATTCTTCCCACATGTACCATGAAGCCATGCATTC
TTTTGCCAGCCATGGTGTAAAGTTTTCTTCTGTTGAAGTTGATTTGCCTG
CTATGATGGCCCAAAAAGATAAAGCTGTGTCTAATCTTACAAGAGGTATT
GAAGGTCTATTCAAGAAGAACAAGGTAACCTATGTGAAAGGATATGGCGA
GTTTATCTCCCCATCTGAGGTCTCTGTGGACACCATTGAAGGTGGAAACA
CTGTCGTGAAAGGCAAGAATATCATAATTGCTACTGGTTCTGACGTTAAG
TCTCTACCTGGGATCACCATTGATGAAAAGAGAATTGTGTCATCCACTGG
AGCTTTAGCATTGAATGAAGTTCCTAAGAAACTCGTGGTCATTGGGGCAG
GCTACATTGGGCTGGAGATGGGCTCAGTTTGGGCCAGGCTTGGTTCAGAG
GTCACTGTTGTTGAATTTGCAGCTGATATCGTCCCAAGCATGGATGGGGA
AATTCGCAAGCAATTTCAGCGTTCACTTGAGAAGCAGAAGATGAAATTCA
TGCTCAAAACT
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