FC917665

Overview
NameFC917665
Unique NameFC917665
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length861
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: DLDH_MYCBO (Dihydrolipoyl dehydrogenase OS=Mycobacterium bovis GN=lpd PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 8.458e-33
Identity = 79/219 (36.07%), Postives = 118/219 (53.88%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKT 861
            AAI+AAQLGL T  +E +   GG CLNVGCIPSKALL ++ + H       + G+    V  D      +  K       G+  L KKNK+T + GYG F   + + VD  +GG   V   N IIATGS  + +PG ++    +V+    +   E+PK +++ GAG IG+E G V    G +VT+VEF    +P+ D ++ K+ ++  +K  +  +  T
Sbjct:   18 AAIRAAQLGLSTAIVEPK-YWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGIS-GEVTFDYGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSL-SANVVTYEEQILSRELPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTILTAT 233          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: DLDH_MYCLE (Dihydrolipoyl dehydrogenase OS=Mycobacterium leprae GN=lpd PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.214e-32
Identity = 80/222 (36.04%), Postives = 119/222 (53.60%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTV---VKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKT 861
            AAI+AAQLGL T  +E +   GG CLNVGCIPSK LLH++ + H       + G+       D      +  K       G+  L KKNK+T + GYG F   + +SV+  EG       V   N+IIATGS  + +PG T+    +++    +   E+P  +V++GAG IG+E G V    G +VT+VEF    +P+ D E+ K+ ++  +K  +K +  T
Sbjct:   18 AAIRAAQLGLSTAVVEPK-YWGGICLNVGCIPSKVLLHNAELAHIFTKEAKTFGIS-GDASFDYGIAYDRSRKVSEGRVAGVHFLMKKNKITEIHGYGRFTDANTLSVELSEGVPETPLKVTFNNVIIATGSKTRLVPG-TLLSTNVITYEEQILTRELPDSIVIVGAGAIGIEFGYVLKNYGVDVTIVEFLPRAMPNEDAEVSKEIEKQFKKMGIKILTGT 236          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: IRC15_YEAST (Increased recombination centers protein 15 OS=Saccharomyces cerevisiae GN=IRC15 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.641e-31
Identity = 75/221 (33.94%), Postives = 119/221 (53.85%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYH--EAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKT 861
            AA++A+Q GL T C+++R +LGG  L  G +PSK LL+ S++Y   +        G +    + D+ A  +     +  L    +    KN VT  KG   F  P  V +        +V+ K I++ATGS V   PG+ ID  +I+SS  AL+L+ +P +  ++G G IGLE+  ++  LGS VT+VE  ++I  +MD E+    +  L+ Q + F+L T
Sbjct:   32 AAMQASQAGLLTACVDQRASLGGAYLVDGAVPSKTLLYESYLYRLLQQQELIEQRGTRLFPAKFDMQAAQSALKHNIEELGNVYKRELSKNNVTVYKGTAAFKDPHHVEIAQRGMKPFIVEAKYIVVATGSAVIQCPGVAIDNDKIISSDKALSLDYIPSRFTIMGGGTIGLEIACIFNNLGSRVTIVESQSEICQNMDNELASATKTLLQCQGIAFLLDT 252          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: DLDH_ACHLA (Dihydrolipoyl dehydrogenase (Fragment) OS=Acholeplasma laidlawii GN=pdhD PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.641e-31
Identity = 83/223 (37.22%), Postives = 128/223 (57.40%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSD--VKSLPGI--TIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLK 858
            AAIKAAQ G K   +EK   +GG CLN GCIP+K  L S+ +++    S    GV  S  V  D   ++++KD  V  LT G+  L KKN V    G+G+  S +EV V+        +K KN+IIATGS   V  +PG+    ++  +V+S   L +   PK +V++G G IG+E  +V+   GS+VT++E    I+P+MD +IR  + ++L++  ++ + K
Sbjct:   19 AAIKAAQYGAKVALVEKE-VVGGICLNHGCIPTKTFLKSAKVFNTVKKSM-DFGVSTSGEVGFDWSKIVSRKDGVVKQLTNGVAFLLKKNGVDVYNGFGDIKSANEVVVN-----GESLKTKNVIIATGSSAVVPPIPGVKEAYEKGIVVTSRELLNVKNYPKSIVIVGGGVIGVEFATVFNSFGSKVTIIEMMDGILPTMDDDIRVAYAKTLKRDGIEILTK 234          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: DLDH_SYNY3 (Dihydrolipoyl dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=lpdA PE=1 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 2.547e-29
Identity = 80/216 (37.04%), Postives = 118/216 (54.63%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHS--FASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNT--VVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQK 840
            AA+ A + GLKT  IE +  +GGTC+N GCIPSKALL +S    E          G++ + V     A+ A  +  VS +   +     + KV  ++G+G+   P EV   T+ G N   ++K K I++  GS     PGI ID K + +S  A+ L  +P+ + +IG+GYIGLE   V+  LG EVT++E   D++P  D EI K  +R L K +
Sbjct:   21 AALHAVKCGLKTAIIEAKD-MGGTCVNRGCIPSKALLAASGRVREMSDQDHLQQLGIQINGVTFTREAIAAHANDLVSKIQSDLTNSLTRLKVDTIRGWGKVSGPQEV---TVIGDNETRILKAKEIMLCPGSVPFVPPGIEIDHKTVFTSDEAVKLETLPQWIAIIGSGYIGLEFSDVYTALGCEVTMIEALPDLMPGFDPEIAKIAERVLIKSR 232          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: MERA_BACCE (Mercuric reductase OS=Bacillus cereus GN=merA PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.545e-26
Identity = 77/214 (35.98%), Postives = 123/214 (57.48%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNL-TRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATG--SDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQ 837
            +AI+A  L  K   IE RG +GGTC+NVGC+PSK LL +  + H A ++    G+  S+  VDL  ++ QK+  V+ +       L        +KG  +F++ + V V+    GN +   K  +IATG  S   ++PG+  DE   ++ST  L L +VP +L VIG+GYIG+E+G ++  LGSEVT+++ +  ++   D EI +   ++L +Q
Sbjct:  184 SAIEAVALNAKVAMIE-RGTVGGTCVNVGCVPSKTLLRAGEINHLAKNN-PFVGLHTSASNVDLAPLVKQKNDLVTEMRNEKYVNLIDDYGFELIKGESKFVNENTVEVN----GNQIT-AKRFLIATGASSTAPNIPGL--DEVDYLTSTSLLELKKVPNRLTVIGSGYIGMELGQLFHNLGSEVTLIQRSERLLKEYDPEISEAITKALTEQ 388          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: DLDH_MYCGE (Dihydrolipoyl dehydrogenase OS=Mycoplasma genitalium GN=pdhD PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.871e-26
Identity = 77/221 (34.84%), Postives = 124/221 (56.11%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSS-VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGITIDEKR--IVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFM 852
            AA  A +  LKT  IEK+   GG CLNVGCIP+K LL  + +    +H+   +G+  +   ++D   ++ QK + V  L  G++ + K  KV  ++G    I  ++V V+     NT     NII+ATGS  +  +LPG    ++   I+ ST ALAL  VPKK VV+G G IG+E   ++A LGSEVT+++    I+   D ++ +   ++L+ + ++ +
Sbjct:   17 AAEYAGKHKLKTLVIEKQ-YFGGVCLNVGCIPTKTLLKRAKIIDYLVHA-KDYGITINGQAKLDWKQLLKQKQEVVDKLVAGVKTIIKGAKVESIEGEATVIDKNKVQVN-----NTTYTTNNIIVATGSRPRYLTLPGFEKAQQAGFIIDSTQALALEGVPKKFVVVGGGVIGVEFAFLFASLGSEVTIIQGVDRILEVCDSDVSELISKTLKNKGVQII 230          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: STHA_MYCTU (Probable soluble pyridine nucleotide transhydrogenase OS=Mycobacterium tuberculosis GN=sthA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.231e-25
Identity = 70/202 (34.65%), Postives = 108/202 (53.47%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA-MMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSV-DTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEI 804
            AAI +A+LG     +E+   LGG C+N G IPSK L   + +Y   M+    +G  +   +   PA ++A+    +      +     +N+V  + G+G FI P  + V D      T V G  IIIATG+      G+  DE+R++ S G L L  +P  +VV+GAG IG+E  S++A LG++VTVVE   +++   D E+
Sbjct:   18 AAIASAKLGKSVAIVERGRMLGGVCVNTGTIPSKTL-REAVLYLTGMNQRELYGASYRVKDRITPADLLARTQHVIGKEVDVVRNQLMRNRVDLIVGHGRFIDPHTILVEDQARREKTTVTGDYIIIATGTRPARPSGVEFDEERVLDSDGILDLKSLPSSMVVVGAGVIGIEYASMFAALGTKVTVVEKRDNMLDFCDPEV 218          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: STHA_MYCTA (Soluble pyridine nucleotide transhydrogenase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=sthA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.231e-25
Identity = 70/202 (34.65%), Postives = 108/202 (53.47%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA-MMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSV-DTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEI 804
            AAI +A+LG     +E+   LGG C+N G IPSK L   + +Y   M+    +G  +   +   PA ++A+    +      +     +N+V  + G+G FI P  + V D      T V G  IIIATG+      G+  DE+R++ S G L L  +P  +VV+GAG IG+E  S++A LG++VTVVE   +++   D E+
Sbjct:   18 AAIASAKLGKSVAIVERGRMLGGVCVNTGTIPSKTL-REAVLYLTGMNQRELYGASYRVKDRITPADLLARTQHVIGKEVDVVRNQLMRNRVDLIVGHGRFIDPHTILVEDQARREKTTVTGDYIIIATGTRPARPSGVEFDEERVLDSDGILDLKSLPSSMVVVGAGVIGIEYASMFAALGTKVTVVEKRDNMLDFCDPEV 218          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: STHA_MYCBT (Soluble pyridine nucleotide transhydrogenase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=sthA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.231e-25
Identity = 70/202 (34.65%), Postives = 108/202 (53.47%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA-MMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSV-DTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEI 804
            AAI +A+LG     +E+   LGG C+N G IPSK L   + +Y   M+    +G  +   +   PA ++A+    +      +     +N+V  + G+G FI P  + V D      T V G  IIIATG+      G+  DE+R++ S G L L  +P  +VV+GAG IG+E  S++A LG++VTVVE   +++   D E+
Sbjct:   18 AAIASAKLGKSVAIVERGRMLGGVCVNTGTIPSKTL-REAVLYLTGMNQRELYGASYRVKDRITPADLLARTQHVIGKEVDVVRNQLMRNRVDLIVGHGRFIDPHTILVEDQARREKTTVTGDYIIIATGTRPARPSGVEFDEERVLDSDGILDLKSLPSSMVVVGAGVIGIEYASMFAALGTKVTVVEKRDNMLDFCDPEV 218          
The following BLAST results are available for this feature:
BLAST of FC917665 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
DLDH_MYCBO8.458e-3336.07Dihydrolipoyl dehydrogenase OS=Mycobacterium bovis... [more]
DLDH_MYCLE3.214e-3236.04Dihydrolipoyl dehydrogenase OS=Mycobacterium lepra... [more]
IRC15_YEAST4.641e-3133.94Increased recombination centers protein 15 OS=Sacc... [more]
DLDH_ACHLA4.641e-3137.22Dihydrolipoyl dehydrogenase (Fragment) OS=Acholepl... [more]
DLDH_SYNY32.547e-2937.04Dihydrolipoyl dehydrogenase OS=Synechocystis sp. (... [more]
MERA_BACCE1.545e-2635.98Mercuric reductase OS=Bacillus cereus GN=merA PE=1... [more]
DLDH_MYCGE5.871e-2634.84Dihydrolipoyl dehydrogenase OS=Mycoplasma genitali... [more]
STHA_MYCTU2.231e-2534.65Probable soluble pyridine nucleotide transhydrogen... [more]
STHA_MYCTA2.231e-2534.65Soluble pyridine nucleotide transhydrogenase OS=My... [more]
STHA_MYCBT2.231e-2534.65Soluble pyridine nucleotide transhydrogenase OS=My... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA21AH09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA21AH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917665 ID=FC917665; Name=FC917665; organism=Citrus clementina; type=EST; length=861bp
AATCGATTGATTGGAGAAAAAGTTGATTGAAAAATGGTGATGGCAAGTCT
TGCAAGAAGAAAGGCGTACGTGCTGTCAAGGAATCTCTCGAACTCGTCGA
ATGGTAATGTTTTCAAGTACAGTTTCTCGCTTACAAGGGGCTTCGCTTCG
GCATCTGATGAGAACGACGTCGTCGTCATCGGAGGTGGACCTGGTGGTTA
CGTGGCCGCCATCAAGGCCGCCCAGCTTGGTCTCAAGACCACGTGCATCG
AGAAGCGTGGGGCCCTCGGCGGCACGTGCCTTAACGTCGGATGCATCCCC
TCTAAGGCACTTCTTCATTCTTCCCACATGTACCATGAAGCCATGCATTC
TTTTGCCAGCCATGGTGTAAAGTTTTCTTCTGTTGAAGTTGATTTGCCTG
CTATGATGGCCCAAAAAGATAAAGCTGTGTCTAATCTTACAAGAGGTATT
GAAGGTCTATTCAAGAAGAACAAGGTAACCTATGTGAAAGGATATGGCGA
GTTTATCTCCCCATCTGAGGTCTCTGTGGACACCATTGAAGGTGGAAACA
CTGTCGTGAAAGGCAAGAATATCATAATTGCTACTGGTTCTGACGTTAAG
TCTCTACCTGGGATCACCATTGATGAAAAGAGAATTGTGTCATCCACTGG
AGCTTTAGCATTGAATGAAGTTCCTAAGAAACTCGTGGTCATTGGGGCAG
GCTACATTGGGCTGGAGATGGGCTCAGTTTGGGCCAGGCTTGGTTCAGAG
GTCACTGTTGTTGAATTTGCAGCTGATATCGTCCCAAGCATGGATGGGGA
AATTCGCAAGCAATTTCAGCGTTCACTTGAGAAGCAGAAGATGAAATTCA
TGCTCAAAACT
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