FC917665

Overview
NameFC917665
Unique NameFC917665
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length861
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: GSHR_HAEIN (Glutathione reductase OS=Haemophilus influenzae GN=gor PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.212e-20
Identity = 60/180 (33.33%), Postives = 93/180 (51.67%), Query Frame = 1
Query:  214 KAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFA-SHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSE 750
            +AA  G K   IE +  LGGTC+NVGC+P K + + +H+  EA++++A  +G      + D   ++  +   +S +      +  KN +  + G+G+F+    + V   +G    V   +I+IATG      P I   E  I  S G  AL E+PK+  VIGAGYI +E+  V   LG E
Sbjct:   22 RAASYGKKCAIIEAKH-LGGTCVNVGCVPKKVMFYGAHI-AEAINNYAPDYGFDVEVKKFDFSKLIESRQAYISRIHTSYNNVLAKNNIDVINGFGKFVDAHTIEVTLADGTKEQVTADHILIATGGR-PYRPNIKGQEYGI-DSDGFFALTELPKRAAVIGAGYIAVELSGVLNSLGVE 197          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: GSHR_YEAST (Glutathione reductase OS=Saccharomyces cerevisiae GN=GLR1 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.401e-19
Identity = 62/194 (31.96%), Postives = 97/194 (50.00%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHS-----FASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDV---KSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVV 762
            +A +AA  G KT  +E + ALGGTC+NVGC+P K + ++S +     H+     + +  +    +  + P    ++D  V  L    +   +K KV  V G+  F     V V   +    V    +I++ATG      +++PG  +       S G   L E PKK+VV+GAGYIG+E+  V+  LGSE  +V
Sbjct:   38 SARRAASYGAKTLLVEAK-ALGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDKEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPENIPGFELG----TDSDGFFRLEEQPKKVVVVGAGYIGIELAGVFHGLGSETHLV 226          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: TRXR1_MOUSE (Thioredoxin reductase 1, cytoplasmic OS=Mus musculus GN=Txnrd1 PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.829e-19
Identity = 61/205 (29.76%), Postives = 102/205 (49.76%), Query Frame = 1
Query:  241 TCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFM 852
            T +  R  LGGTC+NVGCIP K L+H + +  +A+    ++G K   +V+ D   M       + +L  G     ++ KV Y   YG FI P  +     +G   +   +  +IATG   + L GI  D++  +SS    +L   P K +V+GA Y+ LE     A +G +VTV+   + ++   D ++  +    +E+  +KF+
Sbjct:  161 TPLGTRWGLGGTCVNVGCIPKK-LMHQAALLGQALKDSRNYGWKVEDTVKHDWEKMTESVQSHIGSLNWGYRVALREKKVVYENAYGRFIGPHRIVATNNKGKEKIYSAERFLIATGERPRYL-GIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVM-VRSILLRGFDQDMANKIGEHMEEHGIKFI 362          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: STHA_PSEF5 (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=sthA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.829e-19
Identity = 68/204 (33.33%), Postives = 96/204 (47.06%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH--MYHEAMHSFASHGVK--FSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEI 804
            AA+ AA+ G K   ++ R  +GG C ++G IPSKAL HS    M       F + G    FS      P ++   +K +S       G + +N+V    G G F     V V    G    +  K+IIIATGS       I     RI  S   L+L   P+KL+V GAG IG E  S+++ LG  V +V+    ++  +D EI
Sbjct:   20 AAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVRQIMQFNTNPMFRAIGEPRWFS-----FPDVLKSAEKVISKQVASRTGYYARNRVDVFFGTGSFADEQTVEVVCANGVVEKLVAKHIIIATGSRPYRPADIDFSHPRIYDSDTILSLGHTPRKLIVYGAGVIGCEYASIFSGLGVLVELVDNRGQLLSFLDSEI 218          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: GSHR_NEUCR (Glutathione reductase OS=Neurospora crassa GN=glr-1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.829e-19
Identity = 65/220 (29.55%), Postives = 108/220 (49.09%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKT 861
            A   A + G+K+  +E +  LGGTC+NVGC+P K   +++ +  E +H    +G     +   D P    ++D  V+ L    E     +KV YV G+ + +SP+ V V   +G  +VV  K I+IA G +    P I   E    +S G   ++ +PKK+ ++GAGYI +E   +   LG E  +       + S D  I++   +  E+  +K   K+
Sbjct:   23 ARAAAGKYGIKSMVVEGK-RLGGTCVNVGCVPKKVTFYAA-LVAETIHQAKDYGFSVEQTAPFDWPTFKQKRDAYVARLNGIYERNLANDKVEYVHGWAKLLSPNSVEVTLDDGTKSVVNAKKILIAVGGNPTIPPHIPGSEYG-TNSDGFFDIDTLPKKVALVGAGYIAVEFAGMLNALGVETHLFIRHDTFLRSFDPMIQQVSVKEYERIGVKVHKKS 239          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: TRXR3_MOUSE (Thioredoxin reductase 3 (Fragment) OS=Mus musculus GN=Txnrd3 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.389e-19
Identity = 68/226 (30.09%), Postives = 111/226 (49.12%), Query Frame = 1
Query:  208 AIKAAQLGLKTTCIE--------KRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSS-VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLK 858
            A +AA LG K   ++            LGGTC+NVGCIP K L+H + +   A+     +G +++  V+ +  AM       + +L  G     ++  VTYV  +GEF+   ++     +G  T       +IATG   + L GI  D++  ++S    +L   P   +V+GA Y+GLE     A LG +VTV+   + ++   D E+ ++    LE+Q +KF  K
Sbjct:  226 AKEAANLGKKVMVLDFVVPSPQGTTWGLGGTCVNVGCIPKK-LMHQAALLGHALQDAKKYGWEYNQQVKHNWEAMTEAIQSHIGSLNWGYRVTLREKGVTYVNSFGEFVDLHKIKATNKKGQETFYTASKFVIATGERPRYL-GIQGDKEYCITSDDLFSLPYCPGCTLVVGASYVGLECAGFLAGLGLDVTVM-VRSVLLRGFDQEMAEKVGSYLEQQGVKFQRK 448          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: STHA_PSEPW (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas putida (strain W619) GN=sthA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.389e-19
Identity = 67/204 (32.84%), Postives = 97/204 (47.55%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH--MYHEAMHSFASHGVK--FSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEI 804
            AA+ AA+ G K   ++ R  +GG C ++G IPSKAL HS    M       F + G    FS      P ++   +K +S       G + +N+V    G G F     V V    G    +  K+IIIATGS       I     R+  S   L+L+  P+KL+V GAG IG E  S+++ LG  V +V+    ++  +D EI
Sbjct:   20 AAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVRQIMQFNTNPMFRAIGEPRWFS-----FPDVLKSAEKVISKQVASRTGYYARNRVDLFFGTGSFADEQTVEVVCPNGVVEKLNAKHIIIATGSRPYRPADIDFHHPRVYDSDTILSLSHTPRKLIVYGAGVIGCEYASIFSGLGVLVELVDNRGQLLSFLDSEI 218          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: STHA_PSEPG (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas putida (strain GB-1) GN=sthA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.120e-19
Identity = 67/204 (32.84%), Postives = 97/204 (47.55%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH--MYHEAMHSFASHGVK--FSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEI 804
            AA+ AA+ G K   ++ R  +GG C ++G IPSKAL HS    M       F + G    FS      P ++   +K +S       G + +N+V    G G F     V V    G    +  K+IIIATGS       I     R+  S   L+L+  P+KL+V GAG IG E  S+++ LG  V +V+    ++  +D EI
Sbjct:   20 AAMNAAKAGRKVAMVDDRRQVGGNCTHLGTIPSKALRHSVRQIMQFNTNPMFRAIGEPRWFS-----FPDVLKSAEKVISKQVASRTGYYARNRVDVFFGTGSFADEQTVEVVCPNGVVEKLNAKHIIIATGSRPYRPADIDFHHPRVYDSDTILSLSHTPRKLIVYGAGVIGCEYASIFSGLGVLVELVDNRGQLLSFLDSEI 218          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: STHA_PSEPF (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas fluorescens (strain Pf0-1) GN=sthA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.120e-19
Identity = 67/204 (32.84%), Postives = 96/204 (47.06%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH--MYHEAMHSFASHGVK--FSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEI 804
            AA+ AA+ G K   ++ R  +GG C ++G IPSKAL HS    M       F + G    FS      P ++   +K +S       G + +N+V    G G F     + V    G    +  K+IIIATGS       I     RI  S   L+L   P+KL+V GAG IG E  S+++ LG  V +V+    ++  +D EI
Sbjct:   20 AAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVRQIMQFNTNPMFRAIGEPRWFS-----FPDVLKSAEKVISKQVASRTGYYARNRVDVFFGTGSFADEQTIEVVCANGVVEKLVAKHIIIATGSRPYRPADIDFHHPRIYDSDTILSLGHTPRKLIVYGAGVIGCEYASIFSGLGVLVELVDNRGQLLSFLDSEI 218          
BLAST of FC917665 vs. ExPASy Swiss-Prot
Match: STHA_PSEE4 (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas entomophila (strain L48) GN=sthA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.075e-19
Identity = 67/204 (32.84%), Postives = 97/204 (47.55%), Query Frame = 1
Query:  205 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH--MYHEAMHSFASHGVK--FSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEI 804
            AA+ AA+ G K   ++ R  +GG C ++G IPSKAL HS    M       F + G    FS      P ++   +K +S       G + +N+V    G G F     V V    G    +  K+IIIATGS       I     R+  S   L+L+  P+KL+V GAG IG E  S+++ LG  V +V+    ++  +D EI
Sbjct:   20 AAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVRQIMQFNTNPMFRAIGEPRWFS-----FPDVLKSAEKVISKQVASRTGYYARNRVDVFFGTGSFADEQTVEVVCPNGVVEKLVAKHIIIATGSRPYRPADIDFHHPRVYDSDTILSLSHTPRKLIVYGAGVIGCEYASIFSGLGVLVELVDNRGQLLSFLDSEI 218          
The following BLAST results are available for this feature:
BLAST of FC917665 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
GSHR_HAEIN8.212e-2033.33Glutathione reductase OS=Haemophilus influenzae GN... [more]
GSHR_YEAST1.401e-1931.96Glutathione reductase OS=Saccharomyces cerevisiae ... [more]
TRXR1_MOUSE1.829e-1929.76Thioredoxin reductase 1, cytoplasmic OS=Mus muscul... [more]
STHA_PSEF51.829e-1933.33Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
GSHR_NEUCR1.829e-1929.55Glutathione reductase OS=Neurospora crassa GN=glr-... [more]
TRXR3_MOUSE2.389e-1930.09Thioredoxin reductase 3 (Fragment) OS=Mus musculus... [more]
STHA_PSEPW2.389e-1932.84Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PSEPG3.120e-1932.84Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PSEPF3.120e-1932.84Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PSEE44.075e-1932.84Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA21AH09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA21AH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917665 ID=FC917665; Name=FC917665; organism=Citrus clementina; type=EST; length=861bp
AATCGATTGATTGGAGAAAAAGTTGATTGAAAAATGGTGATGGCAAGTCT
TGCAAGAAGAAAGGCGTACGTGCTGTCAAGGAATCTCTCGAACTCGTCGA
ATGGTAATGTTTTCAAGTACAGTTTCTCGCTTACAAGGGGCTTCGCTTCG
GCATCTGATGAGAACGACGTCGTCGTCATCGGAGGTGGACCTGGTGGTTA
CGTGGCCGCCATCAAGGCCGCCCAGCTTGGTCTCAAGACCACGTGCATCG
AGAAGCGTGGGGCCCTCGGCGGCACGTGCCTTAACGTCGGATGCATCCCC
TCTAAGGCACTTCTTCATTCTTCCCACATGTACCATGAAGCCATGCATTC
TTTTGCCAGCCATGGTGTAAAGTTTTCTTCTGTTGAAGTTGATTTGCCTG
CTATGATGGCCCAAAAAGATAAAGCTGTGTCTAATCTTACAAGAGGTATT
GAAGGTCTATTCAAGAAGAACAAGGTAACCTATGTGAAAGGATATGGCGA
GTTTATCTCCCCATCTGAGGTCTCTGTGGACACCATTGAAGGTGGAAACA
CTGTCGTGAAAGGCAAGAATATCATAATTGCTACTGGTTCTGACGTTAAG
TCTCTACCTGGGATCACCATTGATGAAAAGAGAATTGTGTCATCCACTGG
AGCTTTAGCATTGAATGAAGTTCCTAAGAAACTCGTGGTCATTGGGGCAG
GCTACATTGGGCTGGAGATGGGCTCAGTTTGGGCCAGGCTTGGTTCAGAG
GTCACTGTTGTTGAATTTGCAGCTGATATCGTCCCAAGCATGGATGGGGA
AATTCGCAAGCAATTTCAGCGTTCACTTGAGAAGCAGAAGATGAAATTCA
TGCTCAAAACT
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