FC917887
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC917887 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 3.687e-23 Identity = 56/201 (27.86%), Postives = 98/201 (48.76%), Query Frame = 3 Query: 147 KLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDK 749 KL R ++H GGG+ AD+LLW+ +++ +++ ++ W + E F+++ + ++ + A SF V+ N +L D+ G+D LFF L+++S IG+YF+F L +IG + T+P +Y +E VD G + + + + YK VD NV+S+IPR K+K Sbjct: 22 KLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVDTAAGKLMRKMKKLYKKVDTNVLSKIPRGTVKNK 222
BLAST of FC917887 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 6.953e-22 Identity = 56/194 (28.87%), Postives = 93/194 (47.94%), Query Frame = 3 Query: 147 KLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIP 728 +L +R +H +GGG++ADVLLW+ +++S V++ AT W++FE FLS+ LLL ++ + + ++N LL D+ + + F V LW+ + +GS +F T+ YIG + + T+P LY R+E VD + + HYK +D +SRIP Sbjct: 44 RLFDRQKPIHHVLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYERYEDEVDGFMDSMIMKFHSHYKKLDTGFLSRIP 237
BLAST of FC917887 vs. ExPASy Swiss-Prot
Match: RTNLG_ARATH (Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=2 SV=2) HSP 1 Score: 103.219 bits (256), Expect = 2.023e-21 Identity = 58/196 (29.59%), Postives = 97/196 (49.49%), Query Frame = 3 Query: 144 FKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFL-SVCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIP 728 +++ R +H +GGG+ ADVLLW+ ++V+ G++ TV WL+F G L S+C +L L++ K + AA++ ++N I + +D + F V LWL+S IG++FSF +L YI +L TVP LY ++E +D + +HY+V + +S+IP Sbjct: 52 YRMFGRERPIHMVLGGGKPADVLLWRDKKVTLGLLSAVTVIWLLFGFGGRRLLTSLCRGSILFLLLSFLWSNALN----KSPENMMDIYIPEKPLLQAASAMTFELNCAFATLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLSLLYICFVLIHTVPMLYEKYEDEIDPIAEKAVIEMKKHYQVFEAKFLSKIP 243
BLAST of FC917887 vs. ExPASy Swiss-Prot
Match: RTNLN_ARATH (Reticulon-like protein B14 OS=Arabidopsis thaliana GN=RTNLB14 PE=2 SV=2) HSP 1 Score: 101.679 bits (252), Expect = 5.886e-21 Identity = 58/198 (29.29%), Postives = 99/198 (50.00%), Query Frame = 3 Query: 159 RHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRV-KINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDK 749 R +++ +GGGR AD++ WK ++ S ++ V T+ W +FE PF++ +LLL I + Q ++ + F KIN+ ++ +DI+ GKDFRL F V LW+LS +G+YFS TL YI + T+P LY ++E + + + + + VI++IP+ +K + Sbjct: 18 RRRSLYHNLGGGRFADIMFWKNKKESGTILGVFTLIWFLFEVVEYPFITFLCQILLLFIFIFLIWSYIGS---SQLIQSKPPSINDLRISESNWRFLFNKINWFIIKLYDISSGKDFRLLFLAVVSLWILSVVGNYFSSLTLLYIVFVGLETIPMLYEQYEEELTYAASKSGRDMKKLLNKFNSKVINKIPKAQAKTR 212
BLAST of FC917887 vs. ExPASy Swiss-Prot
Match: RTNLO_ARATH (Reticulon-like protein B15 OS=Arabidopsis thaliana GN=RTNLB15 PE=2 SV=2) HSP 1 Score: 82.0333 bits (201), Expect = 4.826e-15 Identity = 52/191 (27.23%), Postives = 96/191 (50.26%), Query Frame = 3 Query: 171 VHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLS-VCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYL---LLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPR 731 V Q +G G AD+ LWK + S +V+AT+ W + E + +CS +LLL+++L ++ +N + + + + LLM ++I GKD + F + + Y+ ++ IGSY S T+ YI + S+T+P +Y +F+ +D + G + + + +V + V+S+IPR Sbjct: 4 VDQILGDGAVADLCLWKDKINSGITLVMATLFWFLLEFMEARLVPLLCSILLLLMLILFLWAKFGEVFFTRRPPTPEE-------LNQPDSPLKALFSMMEGHLLMLYEIAYGKDNKTFLKTILYVAIIYNIGSYISLLTILYICLVCSMTIPVVYMQFQELIDSFMGKVSEEKNNLLEVF-KQVVSKIPR 186 The following BLAST results are available for this feature:
BLAST of FC917887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >FC917887 ID=FC917887; Name=FC917887; organism=Citrus clementina; type=EST; length=881bpback to top |