FC917887

Overview
NameFC917887
Unique NameFC917887
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length881
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917887 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.687e-23
Identity = 56/201 (27.86%), Postives = 98/201 (48.76%), Query Frame = 3
Query:  147 KLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDK 749
            KL  R  ++H   GGG+ AD+LLW+  +++  +++  ++ W + E     F+++     +  ++              +                 A SF V+ N +L    D+  G+D  LFF     L+++S IG+YF+F  L +IG +   T+P +Y  +E  VD   G + + + + YK VD NV+S+IPR   K+K
Sbjct:   22 KLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVDTAAGKLMRKMKKLYKKVDTNVLSKIPRGTVKNK 222          
BLAST of FC917887 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.953e-22
Identity = 56/194 (28.87%), Postives = 93/194 (47.94%), Query Frame = 3
Query:  147 KLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIP 728
            +L +R   +H  +GGG++ADVLLW+ +++S  V++ AT  W++FE     FLS+    LLL ++             +                    +   ++N  LL   D+    + + F   V  LW+ + +GS  +F T+ YIG + + T+P LY R+E  VD +   +      HYK +D   +SRIP
Sbjct:   44 RLFDRQKPIHHVLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYERYEDEVDGFMDSMIMKFHSHYKKLDTGFLSRIP 237          
BLAST of FC917887 vs. ExPASy Swiss-Prot
Match: RTNLG_ARATH (Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 2.023e-21
Identity = 58/196 (29.59%), Postives = 97/196 (49.49%), Query Frame = 3
Query:  144 FKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFL-SVCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIP 728
            +++  R   +H  +GGG+ ADVLLW+ ++V+ G++   TV WL+F   G   L S+C   +L L++             K              +  AA++   ++N        I + +D + F   V  LWL+S IG++FSF +L YI  +L  TVP LY ++E  +D         + +HY+V +   +S+IP
Sbjct:   52 YRMFGRERPIHMVLGGGKPADVLLWRDKKVTLGLLSAVTVIWLLFGFGGRRLLTSLCRGSILFLLLSFLWSNALN----KSPENMMDIYIPEKPLLQAASAMTFELNCAFATLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLSLLYICFVLIHTVPMLYEKYEDEIDPIAEKAVIEMKKHYQVFEAKFLSKIP 243          
BLAST of FC917887 vs. ExPASy Swiss-Prot
Match: RTNLN_ARATH (Reticulon-like protein B14 OS=Arabidopsis thaliana GN=RTNLB14 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 5.886e-21
Identity = 58/198 (29.29%), Postives = 99/198 (50.00%), Query Frame = 3
Query:  159 RHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRV-KINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDK 749
            R  +++  +GGGR AD++ WK ++ S  ++ V T+ W +FE    PF++    +LLL I +             Q             ++ +   F   KIN+ ++  +DI+ GKDFRL F  V  LW+LS +G+YFS  TL YI  +   T+P LY ++E  +        + + +     +  VI++IP+  +K +
Sbjct:   18 RRRSLYHNLGGGRFADIMFWKNKKESGTILGVFTLIWFLFEVVEYPFITFLCQILLLFIFIFLIWSYIGS---SQLIQSKPPSINDLRISESNWRFLFNKINWFIIKLYDISSGKDFRLLFLAVVSLWILSVVGNYFSSLTLLYIVFVGLETIPMLYEQYEEELTYAASKSGRDMKKLLNKFNSKVINKIPKAQAKTR 212          
BLAST of FC917887 vs. ExPASy Swiss-Prot
Match: RTNLO_ARATH (Reticulon-like protein B15 OS=Arabidopsis thaliana GN=RTNLB15 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 4.826e-15
Identity = 52/191 (27.23%), Postives = 96/191 (50.26%), Query Frame = 3
Query:  171 VHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLS-VCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYL---LLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPR 731
            V Q +G G  AD+ LWK +  S   +V+AT+ W + E      +  +CS +LLL+++L            ++             +N   +  +   + +   LLM ++I  GKD + F + + Y+ ++  IGSY S  T+ YI  + S+T+P +Y +F+  +D + G + +  +   +V  + V+S+IPR
Sbjct:    4 VDQILGDGAVADLCLWKDKINSGITLVMATLFWFLLEFMEARLVPLLCSILLLLMLILFLWAKFGEVFFTRRPPTPEE-------LNQPDSPLKALFSMMEGHLLMLYEIAYGKDNKTFLKTILYVAIIYNIGSYISLLTILYICLVCSMTIPVVYMQFQELIDSFMGKVSEEKNNLLEVF-KQVVSKIPR 186          
The following BLAST results are available for this feature:
BLAST of FC917887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RTNLI_ARATH3.687e-2327.86Reticulon-like protein B9 OS=Arabidopsis thaliana ... [more]
RTNLH_ARATH6.953e-2228.87Reticulon-like protein B8 OS=Arabidopsis thaliana ... [more]
RTNLG_ARATH2.023e-2129.59Reticulon-like protein B7 OS=Arabidopsis thaliana ... [more]
RTNLN_ARATH5.886e-2129.29Reticulon-like protein B14 OS=Arabidopsis thaliana... [more]
RTNLO_ARATH4.826e-1527.23Reticulon-like protein B15 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA22DF05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22DF05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917887 ID=FC917887; Name=FC917887; organism=Citrus clementina; type=EST; length=881bp
AATGTCGTTTACATTGGCCGCTAAATTTCCGGCGTTGATTGATGGATAAT
TCGGCAGATTCGTGCGATATAGTCGATCGAGATGGAGACGCAGCTGCCAC
CAGTTCCTCATCGACATCCGCCCCCGCCGCCGGCGCCGGAGGATTTAAGC
TTTTAAATCGGCACGGAACAGTTCACCAGTTCATGGGCGGCGGTAGAACT
GCTGATGTGCTGTTATGGAAACGACGCCGTGTTTCTTTTGGTGTGATTGT
GGTTGCTACCGTTGCATGGCTGATATTTGAGCGGTCTGGGTTACCTTTCT
TGTCTGTTTGTTCGGATGTTTTGCTGTTGCTGATCGTTTTGATGTTCTTT
CGTGCCAATTTTGCTGCTTTTAGAAATAAACAACTAGAGTCATTACCTGA
GTTGGAGGTATCGGAGGAAATGGTTAATAATGCTGCAGCATCATTTCGTG
TTAAAATAAACTATCTGCTCCTTATGGCTCACGACATCACTGTTGGCAAG
GATTTTAGACTCTTTTTCCAGGTGGTGGCCTATCTTTGGCTCCTGTCTGC
CATTGGTAGCTACTTCTCATTCTTCACTCTAGCCTATATCGGAACTCTCT
TATCCATTACAGTTCCTGCATTGTACAGCAGATTTGAAGCACGTGTGGAT
AGATATTGCGGGATGATCCATAAGAGTATATCTCAGCACTACAAAGTAGT
GGACGAAAATGTTATTAGTCGAATTCCAAGGACTTTATCCAAGGACAAAG
TTTCATAACTTTGATATTTTTCTAACAGATGACAGTTTATTAAAAAGGAA
AAACAGAACCATAACGGTATGAGTGAATGTCGCAGAATTTTGGAGCATCG
AATTGATGCAGAGTTGTCAAAGTTTCTCTTC
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