FC917952

Overview
NameFC917952
Unique NameFC917952
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917952 vs. ExPASy Swiss-Prot
Match: HOT_XENLA (Hydroxyacid-oxoacid transhydrogenase, mitochondrial OS=Xenopus laevis GN=adhfe1 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.521e-35
Identity = 84/176 (47.73%), Postives = 110/176 (62.50%), Query Frame = 1
Query:  115 INLLRTVQFTHPPSCPCHSNPAHHHHNPTTVHQAKRALATPIDYSQQKEYAFEMAASSIRFGPGCTKEVGMDMQNLGAKKVMVVTDGTVKKLEAMRQAIQGLEQAGIAYDVFDGVRVEPKDSSIKQAIEYAKPYGADAFLAVGGGSVIDTAKLMNLYTSFPNADFLDFVNAPLGRG 642
            I+LLR +Q     SC C   PAH H    T  QA     T        +YAFEMA SSIR+G   T+E+GMD+QN G + V V+TD  + +L  ++  +  L + GI + ++D VRVEP D S   AIE+AK    DAF+AVGGGSVIDT K  NLY+S P++DFLD+VN P+G+G
Sbjct:    9 IHLLRQLQRA---SCRC---PAHSH----TYSQAPATARTT-------DYAFEMAVSSIRYGENVTQEIGMDLQNWGTRNVCVMTDRNLSELSPVKAVLNSLVKNGINFKLYDSVRVEPTDKSFMDAIEFAKKGQFDAFVAVGGGSVIDTCKAANLYSSSPDSDFLDYVNPPIGKG 167          
BLAST of FC917952 vs. ExPASy Swiss-Prot
Match: HOT_CAEBR (Probable hydroxyacid-oxoacid transhydrogenase, mitochondrial OS=Caenorhabditis briggsae GN=CBG02769 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.066e-33
Identity = 72/153 (47.06%), Postives = 98/153 (64.05%), Query Frame = 1
Query:  187 HHNPTTVHQAKRALATPIDYSQQKEYAFEMAASSIRFGPGCTKEVGMDMQNLGAKKVMVVTDGTVKKLEAMRQAIQGLEQAGIAYDVFDGVRVEPKDSSIKQAIEYAKPYGADAFLAVGGGSVIDTAKLMNLYTSFPNADFLDFVNAPLGRGL 645
            HH PTT       +A     ++  +YAFEM  S++RFG G T E+G D++NLGAKK +++TD  V+   A + A Q L+   I Y++FD V +EP + S+++AI +AK    D+F+AVGGGSVIDT K   LY S P ADFLDFV  P G+ L
Sbjct:   20 HHAPTT---NPFRMAKLHGNNKSTDYAFEMVCSTLRFGKGVTLEIGYDVRNLGAKKTLLITDKNVQNTIAFKNAEQALKMVNIEYEIFDDVLIEPSEKSMQKAIAFAKSKPFDSFIAVGGGSVIDTTKAAALYASNPEADFLDFVGPPFGKSL 169          
BLAST of FC917952 vs. ExPASy Swiss-Prot
Match: HOT_CAEEL (Probable hydroxyacid-oxoacid transhydrogenase, mitochondrial OS=Caenorhabditis elegans GN=Y38F1A.6 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.812e-32
Identity = 72/153 (47.06%), Postives = 97/153 (63.40%), Query Frame = 1
Query:  187 HHNPTTVHQAKRALATPIDYSQQKEYAFEMAASSIRFGPGCTKEVGMDMQNLGAKKVMVVTDGTVKKLEAMRQAIQGLEQAGIAYDVFDGVRVEPKDSSIKQAIEYAKPYGADAFLAVGGGSVIDTAKLMNLYTSFPNADFLDFVNAPLGRGL 645
            HH P T       LA     ++  +YAFEM  S++RFG G T E+G D++NLGAKK +++TD  V+   A + A Q L+   I Y+VFD V +EP  +S+++AI +AK    D+F+AVGGGSVIDT K   LY S P ADFLDFV  P G+ +
Sbjct:   20 HHAPAT---NPFKLAKLHGNNKSTDYAFEMVCSTLRFGKGVTLEIGYDVRNLGAKKTLLITDKNVQNTIAFKNAEQALKMVNIEYEVFDDVLIEPTVNSMQKAIAFAKSKQFDSFIAVGGGSVIDTTKAAALYASNPEADFLDFVGPPFGKSM 169          
BLAST of FC917952 vs. ExPASy Swiss-Prot
Match: HOT_DICDI (Probable hydroxyacid-oxoacid transhydrogenase, mitochondrial OS=Dictyostelium discoideum GN=adhfe1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.202e-26
Identity = 63/143 (44.06%), Postives = 89/143 (62.24%), Query Frame = 1
Query:  259 EYAFEMAASSIRFGPGCTKEVGMDMQNLGAKKVMVVTDGTVKKL------EAMRQAIQGLEQAGIAYDVFDGVRVEPKDSSIKQAIEYAKPYGADAFLAVGGGSVIDTAKLMNLYTSFPNA--DFLDFVNAPLGRGLPIQGKL 663
            +YAFE +A++IRFG G T EVG D+ ++  + V+V TD  + KL       A+ + +  LE+ GI Y ++  V +EP D+S K AI        D  +AVGGGSV+DTAK  NLY S+P A  DFL ++N P+G+GL + G L
Sbjct:  111 DYAFEASANNIRFGSGVTYEVGYDLLDMNCRNVIVFTDNNLLKLVDTDKESAVAKCLYSLEKCGIKYTIYSDVSIEPTDTSFKDAISVMGKGRYDGVVAVGGGSVMDTAKAANLYNSYPPADNDFLAYINPPIGKGLLVPGPL 253          
BLAST of FC917952 vs. ExPASy Swiss-Prot
Match: MEDH_BACMT (NAD-dependent methanol dehydrogenase OS=Bacillus methanolicus GN=mdh PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 9.928e-11
Identity = 30/95 (31.58%), Postives = 53/95 (55.79%), Query Frame = 1
Query:  298 GPGCTKEVGMDMQNLGAKKVMVVTDGTVKKLEAMRQAIQGLEQAGIAYDVFDGVRVEPKDSSIKQAIEYAKPYGADAFLAVGGGSVIDTAKLMNL 582
            G G  KEVG  ++ +GAKK ++VTD  +       +  + + +AG+   +F   + +P D+ + + ++  K    DA +++GGGS  DTAK + L
Sbjct:   13 GRGAVKEVGTRLKQIGAKKALIVTDAFLHSTGLSEEVAKNIREAGLDVAIFPKAQPDPADTQVHEGVDVFKQENCDALVSIGGGSSHDTAKAIGL 107          
The following BLAST results are available for this feature:
BLAST of FC917952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
HOT_XENLA1.521e-3547.73Hydroxyacid-oxoacid transhydrogenase, mitochondria... [more]
HOT_CAEBR7.066e-3347.06Probable hydroxyacid-oxoacid transhydrogenase, mit... [more]
HOT_CAEEL7.812e-3247.06Probable hydroxyacid-oxoacid transhydrogenase, mit... [more]
HOT_DICDI2.202e-2644.06Probable hydroxyacid-oxoacid transhydrogenase, mit... [more]
MEDH_BACMT9.928e-1131.58NAD-dependent methanol dehydrogenase OS=Bacillus m... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA18DE08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA18DE08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917952 ID=FC917952; Name=FC917952; organism=Citrus clementina; type=EST; length=664bp
CGCCCACCATGACGCTGCGCCCTTCATGCGCGTCTTTTGCTCACATTCCC
CCTTAAAAATCGATCAGATATCATGGCCGCCGTCAGAATCAGCCCTTCGC
GGGCCACGCGTGCCATCAACCTCCTCCGCACTGTGCAATTCACCCATCCG
CCGTCATGCCCGTGCCACTCTAACCCTGCGCATCACCACCACAATCCTAC
CACAGTTCACCAGGCCAAGCGTGCACTCGCGACGCCCATTGACTACTCGC
AACAGAAGGAATATGCGTTTGAAATGGCAGCCTCGTCCATCAGGTTTGGC
CCCGGATGCACCAAGGAAGTCGGAATGGACATGCAAAACCTGGGTGCGAA
GAAGGTCATGGTTGTGACCGATGGCACTGTGAAGAAGCTAGAAGCTATGA
GGCAGGCGATCCAGGGTCTGGAGCAGGCCGGCATTGCGTACGACGTCTTC
GATGGCGTGCGTGTTGAGCCCAAGGACAGCAGCATCAAGCAGGCCATCGA
ATATGCGAAGCCGTACGGAGCCGATGCCTTTTTGGCCGTGGGCGGTGGCA
GTGTTATCGACACAGCGAAGCTCATGAATCTGTACACTTCCTTCCCCAAT
GCCGACTTTCTCGACTTCGTCAATGCGCCACTGGGTCGCGGCCTCCCCAT
CCAGGGCAAGCTGA
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