FC918123

Overview
NameFC918123
Unique NameFC918123
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length821
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: ELAV4_RAT (ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.644e-14
Identity = 52/169 (30.77%), Postives = 84/169 (49.70%), Query Frame = 1
Query:   67 TNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRDP-RGISRGSGFVAFSTPEEASIALLEMNGR 567
            TN+ V  L  + T+E+ +  FG  G I S  ++RD   G+S  +GFVN+ +  DA +A+  LNG +   K   V  A+  S                     +  NLY+  L  ++  ++L+ LFS +G I + +++ D   G+SRG GF+ F    EA  A+  +NG+
Sbjct:   39 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189          
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: ELAV4_MOUSE (ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.644e-14
Identity = 52/169 (30.77%), Postives = 84/169 (49.70%), Query Frame = 1
Query:   67 TNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRDP-RGISRGSGFVAFSTPEEASIALLEMNGR 567
            TN+ V  L  + T+E+ +  FG  G I S  ++RD   G+S  +GFVN+ +  DA +A+  LNG +   K   V  A+  S                     +  NLY+  L  ++  ++L+ LFS +G I + +++ D   G+SRG GF+ F    EA  A+  +NG+
Sbjct:   51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 201          
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: ELAV4_HUMAN (ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.644e-14
Identity = 52/169 (30.77%), Postives = 84/169 (49.70%), Query Frame = 1
Query:   67 TNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRDP-RGISRGSGFVAFSTPEEASIALLEMNGR 567
            TN+ V  L  + T+E+ +  FG  G I S  ++RD   G+S  +GFVN+ +  DA +A+  LNG +   K   V  A+  S                     +  NLY+  L  ++  ++L+ LFS +G I + +++ D   G+SRG GF+ F    EA  A+  +NG+
Sbjct:   46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196          
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.663e-14
Identity = 57/183 (31.15%), Postives = 87/183 (47.54%), Query Frame = 1
Query:   67 TNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRD-PRGISRGSGFVAFSTPEEASIALLEMNGRMV--VSKPLYVALA 603
            TN+ V  L  + T+++L+  F   G + SA ++RD   G S  +GFVN+  + DA RA+  LNG +   K   V  A+  SE                    +  NLYI  L  ++  + ++ +FS FG I + +V+ D   G+SRG  F+ F    EA  A+   NG      S+P+ V  A
Sbjct:   20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSE------------------VIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 184          
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.784e-14
Identity = 54/185 (29.19%), Postives = 93/185 (50.27%), Query Frame = 1
Query:   43 TEISKSKFTNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE-------AADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRDPRGISRGSGFVAFSTPEEASIALLEMNGRMV 573
            T+ S+  F +V+V +LS   T ED++ +F  +G I+ A V++D   GKSK +GFV+F N  DA  A++ + G+    ++     A +K       K  +E N K+       +        +Y   +   + ++ ++  FSPFG I   +V  D     +G  FV FS+ E A+ A++ +NG  +
Sbjct:   99 TQRSQDHF-HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAP---KSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KGYSFVRFSSHESAAHAIVSVNGTTI 274          

HSP 2 Score: 75.0998 bits (183), Expect = 5.289e-13
Identity = 53/181 (29.28%), Postives = 90/181 (49.72%), Query Frame = 1
Query:   73 VYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRD-PRGISRGSGFVAFSTPEEASIALLEMNGRMVVSKPLYVALA*RK 612
            +YV NLS   TE  + + F + G   +  ++ D  G    + FV F     AA A+ A+NG+K   KE  V  A   S ++ +       + + + D F   ++++ +L   I  E +K  F+PFG I+  +V++D   G S+G GFV+F    +A  A+ +M G+ +  + +    A RK
Sbjct:    9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF---HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185          
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: MRD1_NEUCR (Multiple RNA-binding domain-containing protein 1 OS=Neurospora crassa GN=mrd-1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.784e-14
Identity = 66/226 (29.20%), Postives = 112/226 (49.56%), Query Frame = 1
Query:   31 LERDTEISKSKFTNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDGDGK------SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELEL--KHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRDPRGISRGSGFVAFSTPEEASIALLEMNGRMVVSKPLYVALA*RK----EDRRARLQAQF-AQMRPVAM 669
            LERD    + + ++++V+NL+ STT + L  +F        A V    D K      S  FGFV F   D A  A++ ++G+  D  +  V    K S R L+   + + E   K+AA+  QGT L +KNL   +  ++++ LFS +G + + ++ +     SRG  F  FST +EA  A   +    ++ + L +  A  +    ED+ A ++ +  AQ+  VA+
Sbjct:  587 LERDDAEEQLETSSLFVRNLNFSTTSQGLTDAFKHLDGFVQAKVKTKTDPKKPGQVLSMGFGFVAFRTKDQAQAALKVMDGQVLDAHKISV----KASHRGLDAAEERRREDMAKKAAN--QGTKLVVKNLPFEVTKKEVRTLFSAYGKLVALRIPKKFNQSSRGFAFAEFSTAKEALNAFNSLKDTHILGRRLVIDFAQAEDIDPEDQIAAMEKKTRAQVNKVAL 806          
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 6.248e-14
Identity = 55/185 (29.73%), Postives = 96/185 (51.89%), Query Frame = 1
Query:   43 TEISKSKFTNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMK-----EAADKFQGTN--LYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRDPRGISRGSGFVAFSTPEEASIALLEMNGRMV 573
            T+ S+  F +V+V +LS   T ED++ +F  +G I+ A V++D   GKSK +GFV+F N  DA  A++ + G+    ++     A +K       K  +E N K     E  ++   +N  +Y   +   + ++ ++  FSPFG I   +V  D     +G  FV F++ E A+ A++ +NG  +
Sbjct:   99 TQRSQDHF-HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAP---KSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KGYSFVRFNSHESAAHAIVSVNGTTI 274          

HSP 2 Score: 75.0998 bits (183), Expect = 5.289e-13
Identity = 53/181 (29.28%), Postives = 90/181 (49.72%), Query Frame = 1
Query:   73 VYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRD-PRGISRGSGFVAFSTPEEASIALLEMNGRMVVSKPLYVALA*RK 612
            +YV NLS   TE  + + F + G   +  ++ D  G    + FV F     AA A+ A+NG+K   KE  V  A   S ++ +       + + + D F   ++++ +L   I  E +K  F+PFG I+  +V++D   G S+G GFV+F    +A  A+ +M G+ +  + +    A RK
Sbjct:    9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF---HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185          
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.248e-14
Identity = 72/268 (26.87%), Postives = 122/268 (45.52%), Query Frame = 1
Query:   55 KSKFTNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSC-KVMRDP-RGISRGSGFVAFSTPEEASIALLEMNGRMVVSKPLYVALA*RKEDRRAR----LQAQFAQMRPVAMAS---TVAPRMPMYXXXXXXIEQQIFYGQGPPAMIPP---QPAFGYQQQLVPGMRP 819
            +++   VYV  L    +E  L + F + G + +  + +D   G+ + +GFV F + +DA  A++ +N  K   K   V KA   + + L++                G N++I NLD  ID++ L   FS FG I    K+MRDP  G S+G  F+ F++ + +  A+  MNG+ + ++P+ V+ A +K+ +  R     +   A   P++ A     +    P        +   +  G  PP M PP    P       L PG+ P
Sbjct:    9 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHN-KNLDV----------------GANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPPGSFPPPVPPPGALPPGIPP 259          
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.248e-14
Identity = 72/268 (26.87%), Postives = 122/268 (45.52%), Query Frame = 1
Query:   55 KSKFTNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSC-KVMRDP-RGISRGSGFVAFSTPEEASIALLEMNGRMVVSKPLYVALA*RKEDRRAR----LQAQFAQMRPVAMAS---TVAPRMPMYXXXXXXIEQQIFYGQGPPAMIPP---QPAFGYQQQLVPGMRP 819
            +++   VYV  L    +E  L + F + G + +  + +D   G+ + +GFV F + +DA  A++ +N  K   K   V KA   + + L++                G N++I NLD  ID++ L   FS FG I    K+MRDP  G S+G  F+ F++ + +  A+  MNG+ + ++P+ V+ A +K+ +  R     +   A   P++ A     +    P        +   +  G  PP M PP    P       L PG+ P
Sbjct:    9 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHN-KNLDV----------------GANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPPGSFPPPVPPPGALPPGIPP 259          
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.248e-14
Identity = 72/268 (26.87%), Postives = 122/268 (45.52%), Query Frame = 1
Query:   55 KSKFTNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSC-KVMRDP-RGISRGSGFVAFSTPEEASIALLEMNGRMVVSKPLYVALA*RKEDRRAR----LQAQFAQMRPVAMAS---TVAPRMPMYXXXXXXIEQQIFYGQGPPAMIPP---QPAFGYQQQLVPGMRP 819
            +++   VYV  L    +E  L + F + G + +  + +D   G+ + +GFV F + +DA  A++ +N  K   K   V KA   + + L++                G N++I NLD  ID++ L   FS FG I    K+MRDP  G S+G  F+ F++ + +  A+  MNG+ + ++P+ V+ A +K+ +  R     +   A   P++ A     +    P        +   +  G  PP M PP    P       L PG+ P
Sbjct:    9 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHN-KNLDV----------------GANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPPGSFPPPVPPPGALPPGIPP 259          
The following BLAST results are available for this feature:
BLAST of FC918123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
ELAV4_RAT1.644e-1430.77ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4... [more]
ELAV4_MOUSE1.644e-1430.77ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1... [more]
ELAV4_HUMAN1.644e-1430.77ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1... [more]
ELAV1_HUMAN3.663e-1431.15ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1... [more]
TIA1_MOUSE4.784e-1429.19Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=... [more]
MRD1_NEUCR4.784e-1429.20Multiple RNA-binding domain-containing protein 1 O... [more]
TIA1_HUMAN6.248e-1429.73Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=T... [more]
SF3B4_RAT6.248e-1426.87Splicing factor 3B subunit 4 OS=Rattus norvegicus ... [more]
SF3B4_MOUSE6.248e-1426.87Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf... [more]
SF3B4_HUMAN6.248e-1426.87Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA83DF02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA83DF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918123 ID=FC918123; Name=FC918123; organism=Citrus clementina; type=EST; length=821bp
CCAGTTTATGTTGGACATTTCCTCCGCAGGCTGGAGAGAGATACTGAGAT
CAGCAAGAGCAAATTCACCAATGTTTATGTGAAGAACCTCTCATAGTCGA
CAACTGAAGAAGATCTGCAAAAAAGTTTTGGTGAATATGGCACAATCGCA
AGTGCTGTTGTGATGAGGGATGGGGATGGCAAATCAAAATGCTTTGGATT
TGTCAACTTTGAGAATTCGGATGATGCTGCTAGAGCAGTTGAGGCTCTTA
ATGGAAAGAAATTTGACGATAAGGAGTGGTATGTTGGGAAAGCCCAAAAG
AAATCTGAAAGAGAACTTGAATTGAAACATCAATTTGAGCAAAATATGAA
GGAAGCAGCTGACAAATTTCAGGGAACAAACTTATATATTAAAAATTTAG
ATGATAGCATAGATGATGAAAAACTTAAGCACCTGTTCTCTCCATTTGGT
AACATCACATCATGCAAGGTAATGCGAGACCCACGTGGAATTAGTAGAGG
ATCCGGGTTTGTTGCGTTCTCAACTCCTGAAGAGGCATCTATAGCTCTTC
TGGAGATGAATGGCAGGATGGTTGTCTCCAAACCGCTTTATGTTGCTCTT
GCCTAACGCAAGGAAGATAGAAGAGCTAGGTTGCAGGCTCAATTTGCACA
AATGAGGCCAGTTGCAATGGCTTCTACAGTCGCTCCTCGAATGCCGATGT
ACCCTCCTGGTGGTCCAGGTATTGAGCAACAAATATTCTATGGTCAAGGC
CCGCCTGCTATGATTCCTCCTCAGCCTGCATTTGGTTATCAGCAGCAGCT
TGTTCCTGGTATGAGGCCAGG
back to top