FC918123
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: ELAV4_RAT (ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.644e-14 Identity = 52/169 (30.77%), Postives = 84/169 (49.70%), Query Frame = 1 Query: 67 TNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRDP-RGISRGSGFVAFSTPEEASIALLEMNGR 567 TN+ V L + T+E+ + FG G I S ++RD G+S +GFVN+ + DA +A+ LNG + K V A+ S + NLY+ L ++ ++L+ LFS +G I + +++ D G+SRG GF+ F EA A+ +NG+ Sbjct: 39 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: ELAV4_MOUSE (ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.644e-14 Identity = 52/169 (30.77%), Postives = 84/169 (49.70%), Query Frame = 1 Query: 67 TNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRDP-RGISRGSGFVAFSTPEEASIALLEMNGR 567 TN+ V L + T+E+ + FG G I S ++RD G+S +GFVN+ + DA +A+ LNG + K V A+ S + NLY+ L ++ ++L+ LFS +G I + +++ D G+SRG GF+ F EA A+ +NG+ Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 201
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: ELAV4_HUMAN (ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2) HSP 1 Score: 80.1073 bits (196), Expect = 1.644e-14 Identity = 52/169 (30.77%), Postives = 84/169 (49.70%), Query Frame = 1 Query: 67 TNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRDP-RGISRGSGFVAFSTPEEASIALLEMNGR 567 TN+ V L + T+E+ + FG G I S ++RD G+S +GFVN+ + DA +A+ LNG + K V A+ S + NLY+ L ++ ++L+ LFS +G I + +++ D G+SRG GF+ F EA A+ +NG+ Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2) HSP 1 Score: 78.9518 bits (193), Expect = 3.663e-14 Identity = 57/183 (31.15%), Postives = 87/183 (47.54%), Query Frame = 1 Query: 67 TNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRD-PRGISRGSGFVAFSTPEEASIALLEMNGRMV--VSKPLYVALA 603 TN+ V L + T+++L+ F G + SA ++RD G S +GFVN+ + DA RA+ LNG + K V A+ SE + NLYI L ++ + ++ +FS FG I + +V+ D G+SRG F+ F EA A+ NG S+P+ V A Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSE------------------VIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 184
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 4.784e-14 Identity = 54/185 (29.19%), Postives = 93/185 (50.27%), Query Frame = 1 Query: 43 TEISKSKFTNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE-------AADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRDPRGISRGSGFVAFSTPEEASIALLEMNGRMV 573 T+ S+ F +V+V +LS T ED++ +F +G I+ A V++D GKSK +GFV+F N DA A++ + G+ ++ A +K K +E N K+ + +Y + + ++ ++ FSPFG I +V D +G FV FS+ E A+ A++ +NG + Sbjct: 99 TQRSQDHF-HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAP---KSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KGYSFVRFSSHESAAHAIVSVNGTTI 274 HSP 2 Score: 75.0998 bits (183), Expect = 5.289e-13 Identity = 53/181 (29.28%), Postives = 90/181 (49.72%), Query Frame = 1 Query: 73 VYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRD-PRGISRGSGFVAFSTPEEASIALLEMNGRMVVSKPLYVALA*RK 612 +YV NLS TE + + F + G + ++ D G + FV F AA A+ A+NG+K KE V A S ++ + + + + D F ++++ +L I E +K F+PFG I+ +V++D G S+G GFV+F +A A+ +M G+ + + + A RK Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF---HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: MRD1_NEUCR (Multiple RNA-binding domain-containing protein 1 OS=Neurospora crassa GN=mrd-1 PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 4.784e-14 Identity = 66/226 (29.20%), Postives = 112/226 (49.56%), Query Frame = 1 Query: 31 LERDTEISKSKFTNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDGDGK------SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELEL--KHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRDPRGISRGSGFVAFSTPEEASIALLEMNGRMVVSKPLYVALA*RK----EDRRARLQAQF-AQMRPVAM 669 LERD + + ++++V+NL+ STT + L +F A V D K S FGFV F D A A++ ++G+ D + V K S R L+ + + E K+AA+ QGT L +KNL + ++++ LFS +G + + ++ + SRG F FST +EA A + ++ + L + A + ED+ A ++ + AQ+ VA+ Sbjct: 587 LERDDAEEQLETSSLFVRNLNFSTTSQGLTDAFKHLDGFVQAKVKTKTDPKKPGQVLSMGFGFVAFRTKDQAQAALKVMDGQVLDAHKISV----KASHRGLDAAEERRREDMAKKAAN--QGTKLVVKNLPFEVTKKEVRTLFSAYGKLVALRIPKKFNQSSRGFAFAEFSTAKEALNAFNSLKDTHILGRRLVIDFAQAEDIDPEDQIAAMEKKTRAQVNKVAL 806
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3) HSP 1 Score: 78.1814 bits (191), Expect = 6.248e-14 Identity = 55/185 (29.73%), Postives = 96/185 (51.89%), Query Frame = 1 Query: 43 TEISKSKFTNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMK-----EAADKFQGTN--LYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRDPRGISRGSGFVAFSTPEEASIALLEMNGRMV 573 T+ S+ F +V+V +LS T ED++ +F +G I+ A V++D GKSK +GFV+F N DA A++ + G+ ++ A +K K +E N K E ++ +N +Y + + ++ ++ FSPFG I +V D +G FV F++ E A+ A++ +NG + Sbjct: 99 TQRSQDHF-HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAP---KSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KGYSFVRFNSHESAAHAIVSVNGTTI 274 HSP 2 Score: 75.0998 bits (183), Expect = 5.289e-13 Identity = 53/181 (29.28%), Postives = 90/181 (49.72%), Query Frame = 1 Query: 73 VYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRD-PRGISRGSGFVAFSTPEEASIALLEMNGRMVVSKPLYVALA*RK 612 +YV NLS TE + + F + G + ++ D G + FV F AA A+ A+NG+K KE V A S ++ + + + + D F ++++ +L I E +K F+PFG I+ +V++D G S+G GFV+F +A A+ +M G+ + + + A RK Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF---HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 6.248e-14 Identity = 72/268 (26.87%), Postives = 122/268 (45.52%), Query Frame = 1 Query: 55 KSKFTNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSC-KVMRDP-RGISRGSGFVAFSTPEEASIALLEMNGRMVVSKPLYVALA*RKEDRRAR----LQAQFAQMRPVAMAS---TVAPRMPMYXXXXXXIEQQIFYGQGPPAMIPP---QPAFGYQQQLVPGMRP 819 +++ VYV L +E L + F + G + + + +D G+ + +GFV F + +DA A++ +N K K V KA + + L++ G N++I NLD ID++ L FS FG I K+MRDP G S+G F+ F++ + + A+ MNG+ + ++P+ V+ A +K+ + R + A P++ A + P + + G PP M PP P L PG+ P Sbjct: 9 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHN-KNLDV----------------GANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPPGSFPPPVPPPGALPPGIPP 259
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 6.248e-14 Identity = 72/268 (26.87%), Postives = 122/268 (45.52%), Query Frame = 1 Query: 55 KSKFTNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSC-KVMRDP-RGISRGSGFVAFSTPEEASIALLEMNGRMVVSKPLYVALA*RKEDRRAR----LQAQFAQMRPVAMAS---TVAPRMPMYXXXXXXIEQQIFYGQGPPAMIPP---QPAFGYQQQLVPGMRP 819 +++ VYV L +E L + F + G + + + +D G+ + +GFV F + +DA A++ +N K K V KA + + L++ G N++I NLD ID++ L FS FG I K+MRDP G S+G F+ F++ + + A+ MNG+ + ++P+ V+ A +K+ + R + A P++ A + P + + G PP M PP P L PG+ P Sbjct: 9 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHN-KNLDV----------------GANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPPGSFPPPVPPPGALPPGIPP 259
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 6.248e-14 Identity = 72/268 (26.87%), Postives = 122/268 (45.52%), Query Frame = 1 Query: 55 KSKFTNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSC-KVMRDP-RGISRGSGFVAFSTPEEASIALLEMNGRMVVSKPLYVALA*RKEDRRAR----LQAQFAQMRPVAMAS---TVAPRMPMYXXXXXXIEQQIFYGQGPPAMIPP---QPAFGYQQQLVPGMRP 819 +++ VYV L +E L + F + G + + + +D G+ + +GFV F + +DA A++ +N K K V KA + + L++ G N++I NLD ID++ L FS FG I K+MRDP G S+G F+ F++ + + A+ MNG+ + ++P+ V+ A +K+ + R + A P++ A + P + + G PP M PP P L PG+ P Sbjct: 9 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHN-KNLDV----------------GANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPPGSFPPPVPPPGALPPGIPP 259 The following BLAST results are available for this feature:
BLAST of FC918123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 143
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Sequences
The
following sequences are available for this feature:
EST sequence >FC918123 ID=FC918123; Name=FC918123; organism=Citrus clementina; type=EST; length=821bpback to top |