FC918123

Overview
NameFC918123
Unique NameFC918123
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length821
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.248e-14
Identity = 58/188 (30.85%), Postives = 92/188 (48.94%), Query Frame = 1
Query:   73 VYVKNLS*STTEEDLQKSFGEYGT--IASAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRD-PRGISRGSGFVAFSTPEEASIALLEMNGRMVVSKPLYVALA*RKEDRRA 627
            ++V NL      E L   F   G   IA  +  R+ D +S+ FGFV     ++A +AVE LNG   D ++  V KA  +   E   +  FE + +          +Y+ NL   +D  +L+ LFS  G + S +V+ D   G SRG GFV  S+  E + A+  ++G+ +  + + V +A  +  RRA
Sbjct:   57 LFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETD-RSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCR----------VYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVA-EERPRRA 232          
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: ELAV_DROVI (Protein elav OS=Drosophila virilis GN=elav PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.248e-14
Identity = 51/182 (28.02%), Postives = 88/182 (48.35%), Query Frame = 1
Query:   67 TNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRD--------------GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRDPRG--ISRGSGFVAFSTPEEASIALLEMNG 564
            TN+ V  L  + TE++++  F   G I S  ++RD                G+S  +GFVN+    DA +AV  LNG +  +K   V  A+  S                  D  +G NLY+  L  ++  ++L+ +F+PFG I + +++++      ++G GF+ F   EEA+ A++ +NG
Sbjct:  185 TNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSS------------------DAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 348          
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: ELAV_DROME (Protein elav OS=Drosophila melanogaster GN=elav PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.248e-14
Identity = 51/182 (28.02%), Postives = 88/182 (48.35%), Query Frame = 1
Query:   67 TNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRD--------------GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRDPRG--ISRGSGFVAFSTPEEASIALLEMNG 564
            TN+ V  L  + TE++++  F   G I S  ++RD                G+S  +GFVN+    DA +AV  LNG +  +K   V  A+  S                  D  +G NLY+  L  ++  ++L+ +F+PFG I + +++++      ++G GF+ F   EEA+ A++ +NG
Sbjct:  149 TNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSS------------------DAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 312          
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: MUG28_SCHPO (Meiotically up-regulated gene 28 protein OS=Schizosaccharomyces pombe GN=mug28 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.066e-13
Identity = 46/102 (45.10%), Postives = 65/102 (63.73%), Query Frame = 1
Query:  379 NLYIKNLDDSI--DDEKLKHLFSPFGNITSCKVMRDPRG-ISRGSGFVAFSTPEEASIALLEMNGRMVVSKPLYVALA*RKEDRRARLQAQFAQMRPVAMAS 675
            NL++KNLDD+I  + ++L+ LFS FG I SC +   P   IS+G GFV+FS P EA  A+  +NG +   K L+V  A ++EDR+ RL A F+Q  P  + S
Sbjct:  420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFVNYAEKREDRKKRLSAIFSQSYPPVVPS 521          
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: SXL_CERCA (Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.818e-13
Identity = 65/210 (30.95%), Postives = 97/210 (46.19%), Query Frame = 1
Query:   37 RDTEISKSKFTNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRDP-RGISRGSGFVAFSTPEEASIALLEMNGRMV--VSKPLYVALA*RKEDRRARLQAQFAQM 654
            RD     S  TN+ V  L    T+ +L   F   G I +  +MRD   G S  + FV+F    D+ RA+++LNG    +K   V  A+   E                    + TNLY+ NL  +I D++L  +F  +G I    ++RD   G  RG  FV F+  EEA  A+  +N  +    S+PL V LA  +E  +A+ Q   +Q+
Sbjct:  100 RDGHGGGSNGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSLNGITVRNKRLKVSYARPGGE------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISALNNVIPEGASQPLTVRLA--EEHGKAKAQHYMSQL 289          
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: SHEP_DROSI (Protein alan shepard OS=Drosophila simulans GN=shep PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.818e-13
Identity = 54/181 (29.83%), Postives = 83/181 (45.86%), Query Frame = 1
Query:   67 TNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRDPRGISRGSGFVAFSTPEEASIALLEMNGRMV--VSKPLYVALA 603
            TN+Y++ L   TT++DL     +YGTI S   + D    +KC+GFV+FE    A  AV+ L GK                  + ++  Q EQ+          TNLYI NL     +  L+ + S +G + S +++RD +  S+G GF    + E+    +   NG  +     PL V  A
Sbjct:  231 TNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKT-TNKCYGFVDFEQPAFAECAVKGLQGKGV----------------QAQMAKQQEQDP---------TNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFA 385          
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: ELAV1_MOUSE (ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.818e-13
Identity = 57/183 (31.15%), Postives = 86/183 (46.99%), Query Frame = 1
Query:   67 TNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRD-PRGISRGSGFVAFSTPEEASIALLEMNGRMV--VSKPLYVALA 603
            TN+ V  L  + T+E+L+  F   G + SA ++RD   G S  +GFVN+  + DA RA+  LNG +   K   V  A+  SE                    +  NLYI  L  ++  + ++ +FS FG I + +V+ D   G+SRG  F+ F    EA  A+    G      S+P+ V  A
Sbjct:   20 TNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSE------------------VIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFIGHKPPGSSEPITVKFA 184          
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: SXL_CHRRU (Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.289e-13
Identity = 58/183 (31.69%), Postives = 87/183 (47.54%), Query Frame = 1
Query:   67 TNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRDP-RGISRGSGFVAFSTPEEASIALLEMNGRMV--VSKPLYVALA 603
            TN+ V  L    T+ +L   F   G I +  +M+D   G S  + FV+F +  DA  A+++LNG    +K   V  A+   E                    + TNLY+ NL  +I D++L+ +F  +GNI    ++RD   G  RG  FV F+  EEA  A+  +N  +    S+PL V LA
Sbjct:   85 TNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNGVTVRNKRLKVSYARPGGE------------------SIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISALNNVIPEGASQPLTVRLA 249          
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: SHEP_DROAN (Protein alan shepard OS=Drosophila ananassae GN=shep PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.289e-13
Identity = 54/181 (29.83%), Postives = 85/181 (46.96%), Query Frame = 1
Query:   67 TNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRDPRGISRGSGFVAFSTPEEASIALLEMNGRMVV--SKPLYVALA 603
            TN+Y++ L   TT++DL     +YGTI S   + D    +KC+GFV+FE    A  AV+ L GK    +   VG         + + H+     ++       TNLYI NL     +  L+ + S +G + S +++RD +  S+G GF    + E+    +   NG  +     PL V  A
Sbjct:  236 TNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKT-TNKCYGFVDFEQPAFAECAVKGLQGKGVQAQMAKVG---------IWVLHRPAIQQEQ-----DPTNLYIANLPPHYKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNGNTIPGGKDPLLVKFA 401          
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: SXL_MEGSC (Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE=2 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 6.907e-13
Identity = 54/167 (32.34%), Postives = 78/167 (46.71%), Query Frame = 1
Query:   67 TNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRDPR-GISRGSGFVAFSTPEEASIALLEMN 561
            TN+ V  L     + +L   F   G I +  +MRD   G S  +GFV+F +  DA RA+  LNG    +K   V  A+   E+                   + TNLY+ NL  SI DE+L+ +F  +G I    ++RD   G  RG  F+ F+  EEA  A+  +N
Sbjct:   78 TNLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNLNGITVRNKRIKVSFARPGGEQ------------------LRDTNLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAISALN 226          
The following BLAST results are available for this feature:
BLAST of FC918123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
ROC1_SPIOL6.248e-1430.8528 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
ELAV_DROVI6.248e-1428.02Protein elav OS=Drosophila virilis GN=elav PE=3 SV... [more]
ELAV_DROME6.248e-1428.02Protein elav OS=Drosophila melanogaster GN=elav PE... [more]
MUG28_SCHPO1.066e-1345.10Meiotically up-regulated gene 28 protein OS=Schizo... [more]
SXL_CERCA1.818e-1330.95Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE... [more]
SHEP_DROSI1.818e-1329.83Protein alan shepard OS=Drosophila simulans GN=she... [more]
ELAV1_MOUSE1.818e-1331.15ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1... [more]
SXL_CHRRU5.289e-1331.69Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL ... [more]
SHEP_DROAN5.289e-1329.83Protein alan shepard OS=Drosophila ananassae GN=sh... [more]
SXL_MEGSC6.907e-1332.34Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA83DF02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA83DF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918123 ID=FC918123; Name=FC918123; organism=Citrus clementina; type=EST; length=821bp
CCAGTTTATGTTGGACATTTCCTCCGCAGGCTGGAGAGAGATACTGAGAT
CAGCAAGAGCAAATTCACCAATGTTTATGTGAAGAACCTCTCATAGTCGA
CAACTGAAGAAGATCTGCAAAAAAGTTTTGGTGAATATGGCACAATCGCA
AGTGCTGTTGTGATGAGGGATGGGGATGGCAAATCAAAATGCTTTGGATT
TGTCAACTTTGAGAATTCGGATGATGCTGCTAGAGCAGTTGAGGCTCTTA
ATGGAAAGAAATTTGACGATAAGGAGTGGTATGTTGGGAAAGCCCAAAAG
AAATCTGAAAGAGAACTTGAATTGAAACATCAATTTGAGCAAAATATGAA
GGAAGCAGCTGACAAATTTCAGGGAACAAACTTATATATTAAAAATTTAG
ATGATAGCATAGATGATGAAAAACTTAAGCACCTGTTCTCTCCATTTGGT
AACATCACATCATGCAAGGTAATGCGAGACCCACGTGGAATTAGTAGAGG
ATCCGGGTTTGTTGCGTTCTCAACTCCTGAAGAGGCATCTATAGCTCTTC
TGGAGATGAATGGCAGGATGGTTGTCTCCAAACCGCTTTATGTTGCTCTT
GCCTAACGCAAGGAAGATAGAAGAGCTAGGTTGCAGGCTCAATTTGCACA
AATGAGGCCAGTTGCAATGGCTTCTACAGTCGCTCCTCGAATGCCGATGT
ACCCTCCTGGTGGTCCAGGTATTGAGCAACAAATATTCTATGGTCAAGGC
CCGCCTGCTATGATTCCTCCTCAGCCTGCATTTGGTTATCAGCAGCAGCT
TGTTCCTGGTATGAGGCCAGG
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