FC918229

Overview
NameFC918229
Unique NameFC918229
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length903
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC918229 vs. ExPASy Swiss-Prot
Match: SURE_METKA (5'-nucleotidase surE OS=Methanopyrus kandleri GN=surE PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.464e-22
Identity = 69/185 (37.30%), Postives = 104/185 (56.22%), Query Frame = 1
Query:  142 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSDIYISGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVN------DYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLP 678
            I++TNDDGI +PGLR+ VR   S    TV   AP +++S V  SI+   P+     + +GV A A     ISGTPAD   +G   ++    PDLV+SGIN+G N    V  SGTV  A EA+ +G+P+++IS +    ++ V+      D+TLA    + ++ A+L  IR   +     LN+++P
Sbjct:    3 ILITNDDGIASPGLRAAVRACRSVGEVTV--VAPATQQSGVGRSISLLEPVRVEEIEVEGVDALA-----ISGTPADAVLIGAF-SIMDEPPDLVVSGINLGENVSADVTTSGTVGAALEAYGNGIPAIAISQEVRDARARVDNNAKNVDFTLA----IRVLKALLEAIRGANW--EGVLNVNVP 173          
BLAST of FC918229 vs. ExPASy Swiss-Prot
Match: SURE_HELPG (5'-nucleotidase surE OS=Helicobacter pylori (strain G27) GN=surE PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.464e-22
Identity = 76/203 (37.44%), Postives = 106/203 (52.22%), Query Frame = 1
Query:  142 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSDIYISGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYT-LAAEACLPIINAILAEIRNQTYP--ERCFLNIDLPT-DIPNNKGYKLTKQGTSIFK 738
            I++TNDDG  A G+++L + L       + V AP  EKSA S  IT   P+ A          Y + D    GTP+DC  L +++       DLVISGIN+GSN G   +YSGTVAGA E    GVPS++IS       SN N  T L+ +    II  ++  I    YP   R  LN+++P   +   KG ++T +G  ++K
Sbjct:    4 ILLTNDDGYHAKGIKALEQALEEMAE--IYVVAPKHEKSACSQCITITAPLRAEKIKGKEGRHYRIDD----GTPSDCVYLAINELFKHVCFDLVISGINLGSNMGEDTIYSGTVAGAIEGTIQGVPSIAISQI----LSNKNKNTPLSFDLAQKIIQDLVQNIFKNGYPLKGRKLLNVNVPNCSLQEYKGERITPKGYRLYK 196          
BLAST of FC918229 vs. ExPASy Swiss-Prot
Match: SURE_HELP2 (5'-nucleotidase surE OS=Helicobacter pylori (strain P12) GN=surE PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.464e-22
Identity = 76/203 (37.44%), Postives = 106/203 (52.22%), Query Frame = 1
Query:  142 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSDIYISGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYT-LAAEACLPIINAILAEIRNQTYP--ERCFLNIDLPT-DIPNNKGYKLTKQGTSIFK 738
            I++TNDDG  A G+++L + L       + V AP  EKSA S  IT   P+ A          Y + D    GTP+DC  L +++       DLVISGIN+GSN G   +YSGTVAGA E    GVPS++IS       SN N  T L+ +    II  ++  I    YP   R  LN+++P   +   KG ++T +G  ++K
Sbjct:    4 ILLTNDDGYHAKGIKALEQALEEMAE--IYVVAPKHEKSACSQCITITAPLRAEKIKGKEGRHYRIDD----GTPSDCVYLAINELFKHVCFDLVISGINLGSNMGEDTIYSGTVAGAIEGTIQGVPSIAISQI----LSNKNKNTPLSFDLAQKIIQDLVQNIFTNGYPLKGRKLLNVNVPNCSLQEYKGERITPKGYRLYK 196          
BLAST of FC918229 vs. ExPASy Swiss-Prot
Match: SURE2_CHLCV (5'-nucleotidase surE 2 OS=Chlamydophila caviae GN=surE2 PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.464e-22
Identity = 67/194 (34.54%), Postives = 102/194 (52.58%), Query Frame = 1
Query:  142 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSDIYISGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQG 723
            I++TNDDGI APG+  LV  L+  +   + + AP +E+SA S ++T+  P+  +P D+    A A S   +SGTP DC  + ++      +PDLV+SGIN GSN G HV YSGT+  A E+   GVP+V++S +  G  S   +        L  ++     +    +P    LN++ P      KG +    G
Sbjct:   14 ILLTNDDGIFAPGMTLLVSNLLKADFADLYIVAPKTEQSAKSMAMTFHEPVILQPYDYPLPVAGAWS---VSGTPVDCVRIALAYLFKDELPDLVLSGINRGSNAGRHVFYSGTLGAAIESTLCGVPAVALSQE--GNFSFFQEKNFDIPEMLKSLSLYALSLPFAPHP--VALNVNFPASNERWKGMRFVTTG 200          
BLAST of FC918229 vs. ExPASy Swiss-Prot
Match: SURE_SALRD (5'-nucleotidase surE OS=Salinibacter ruber (strain DSM 13855) GN=surE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.912e-22
Identity = 75/214 (35.05%), Postives = 117/214 (54.67%), Query Frame = 1
Query:  124 SDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSDIYISGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISY-DWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPT-DIPNNKGYKLTKQGTSIFKMGWRRVT 759
            S  +P I++ NDDGI APG++SL   L       + V AP +E+SAV H+IT R P+ A   +F+ V +  +    ++GTPAD   L   + L  + PDLV+SGIN G N   +V+YSGTV+ A EA   G+ S++IS  +W     +   + +A +    I+   L    ++  P+   LN+++P       +G  LT+Q  S ++ G+ R T
Sbjct:    6 SGDEPRILLCNDDGIHAPGIQSLASALDGLGE--LFVVAPTTEQSAVGHAITVRDPVRAHREEFE-VPSGPIPAWGVTGTPADSVKLACHE-LLDAPPDLVVSGINQGPNTAVNVLYSGTVSAATEASILGLDSLAISLCEW-----SKPQFEVAGQWARRIVEWAL----DRGLPQGVLLNVNVPALSAEQIEGVALTRQARSRWEEGFERRT 206          
BLAST of FC918229 vs. ExPASy Swiss-Prot
Match: SURE_PROM4 (5'-nucleotidase surE OS=Prochlorococcus marinus (strain MIT 9211) GN=surE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.912e-22
Identity = 82/276 (29.71%), Postives = 127/276 (46.01%), Query Frame = 1
Query:  142 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADF---DGVTAYAVSDIYISGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSI---SYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGY-----------------KLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRREVRGGHIAD 900
            I+++NDDG+ A G+R+L             VC PD E+SA  H +T   PI A  A+     GV+A+  +     GTPADC  L +++ L P  PDL++SGIN G N G  +  SGTVA A E    G+P+++I   S+ W        D++ A++  L I      E   + +P++  LNI+ P    +  G                  ++  +G   + M    V      G   S    D  + +   + + TP+E DL +R     G+I+D
Sbjct:    6 ILISNDDGVFAEGIRTLAGAAAFRGHQVTVVC-PDQERSATGHGLTLHSPIRAEKANELFGKGVSAWGCN-----GTPADCVKLALNEIL-PEKPDLILSGINHGPNLGTDIFCSGTVAAALEGTLAGIPAIAISIASFQW-------RDFSFASQLALEIAE----EALTKNWPQKLLLNINTPPCKSSEMGQLGWTRLSIRQYEEQFTRRIDPRGNPYYWMAGNAVKDIDSAGDGPSQWPSDV-AQIESNSPSITPIEPDLFWR-----GNISD 257          
BLAST of FC918229 vs. ExPASy Swiss-Prot
Match: SURE_HELAH (5'-nucleotidase surE OS=Helicobacter acinonychis (strain Sheeba) GN=surE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.912e-22
Identity = 81/211 (38.39%), Postives = 111/211 (52.61%), Query Frame = 1
Query:  142 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSDIYISGTPADCASLGVSQALFPSVP-DLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYT-LAAEACLPIINAILAEIRNQTYP--ERCFLNIDLPT-DIPNNKGYKLTKQGTSIFKMGWRRVT 759
            I++TNDDG  A G+++L + L       + V AP  EKSA S  IT   P+ A          Y + D    GTP+DC  L +++ LF  V  DLVISGIN+GSN G   +YSGTVAGA E    GVPS++IS       SN N  T L+ +    II  ++  I  + YP   R  LN+++P   +   KG  +T +G  ++K    R T
Sbjct:    4 ILLTNDDGYHAKGIKALEQALEKMAE--IYVVAPKHEKSACSQCITITTPLRAEKIKGKEGRHYRIDD----GTPSDCVYLAINE-LFKHVSFDLVISGINLGSNMGEDTIYSGTVAGAIEGTIQGVPSIAISQI----LSNKNKNTPLSFDLAQKIIQDLVQNIFTKGYPLKGRKLLNVNIPNCSLQEYKGECITPKGYRVYKKEVHRRT 203          
BLAST of FC918229 vs. ExPASy Swiss-Prot
Match: SURE_CYAA5 (5'-nucleotidase surE OS=Cyanothece sp. (strain ATCC 51142) GN=surE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.912e-22
Identity = 72/198 (36.36%), Postives = 108/198 (54.55%), Query Frame = 1
Query:  142 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPAD--FDG-VTAYAVSDIYISGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN-KGYKLTKQG 723
            I+++NDDGI A G+R+L   L     Y V V  PD E+SA  H +T   PI A   +  FD  +TA++ S     GTP+DC  L +S +L  + PD ++SGIN GSN G  V+YSGTV+ A E    G+PS+++S   +   S+      A  AC      ++ ++ +   P+   LN+++P    +   G  LT+QG
Sbjct:    9 ILISNDDGIFALGVRTLANTLAQAG-YQVTVVCPDRERSATGHGLTLHRPIRADIVEDFFDPKITAWSCS-----GTPSDCVKLALS-SLIENRPDFIVSGINHGSNLGTDVLYSGTVSAAMEGIIEGIPSIAMS---LASFSSRQFQPGADFAC-----GLIQQLYDHPLPDSTLLNVNIPPVTADAIAGVMLTRQG 191          
BLAST of FC918229 vs. ExPASy Swiss-Prot
Match: SURE_AGRVS (5'-nucleotidase surE OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=surE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.912e-22
Identity = 75/197 (38.07%), Postives = 104/197 (52.79%), Query Frame = 1
Query:  142 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSDIYISGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS--YDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN-KGYKLTKQG 723
            I++TNDDGI A GL  L R+   T    V + AP++++S ++HS+T   P+  R     G   YA     + GTP DC  + + + L P  PDLV+SG+N G+N    V YSGTVAGA E   HGV S ++S  Y +V G S   D     E   P   A++A++     P   FLN++ P   P    G  +T QG
Sbjct:    3 ILLTNDDGIHADGLAVLERI-ARTLSDDVWIVAPETDQSGLAHSLTLSEPLRLRQL---GENRYA-----LRGTPTDCVIMAIRK-LLPGKPDLVLSGVNAGANLADDVTYSGTVAGAIEGTVHGVRSFALSQAYSYVAGHSIPWD---VVETHAP---ALIAKLMRIDLPPGTFLNLNFPNCEPGEVAGVDVTSQG 183          
BLAST of FC918229 vs. ExPASy Swiss-Prot
Match: SURE_PETMO (5'-nucleotidase surE OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=surE PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.498e-22
Identity = 77/197 (39.09%), Postives = 116/197 (58.88%), Query Frame = 1
Query:  142 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSDIYISGTPADCASLGVSQALFPSVP-DLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS-YDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN--KGYKLTKQ 720
            I+++NDDGI +PG+ +L   L    ++ V V APD E+SA  H IT R+P+ A+   F G T +  +   ++GTPADC  +G+  A++  +  D+VISGIN G+N G  V+YSGTV+ A E    G PS+++S  D+    SN N      E    ++  IL ++    +PE   LN+++P  IP +  KG K+TKQ
Sbjct:    3 ILLSNDDGIMSPGIITLKTYL--QQKHDVYVVAPDIERSATGHGITVRNPLWAKKVKF-GDTFFGHA---VNGTPADCVKIGLD-AIYKDIHFDVVISGINRGANLGTDVLYSGTVSAALEGAVGGYPSIAVSCVDF----SNPN-----FEDGAKVVLNILEKLDLNNWPEFTTLNVNIP-KIPYDEMKGIKITKQ 182          
The following BLAST results are available for this feature:
BLAST of FC918229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SURE_METKA1.464e-2237.305'-nucleotidase surE OS=Methanopyrus kandleri GN=s... [more]
SURE_HELPG1.464e-2237.445'-nucleotidase surE OS=Helicobacter pylori (strai... [more]
SURE_HELP21.464e-2237.445'-nucleotidase surE OS=Helicobacter pylori (strai... [more]
SURE2_CHLCV1.464e-2234.545'-nucleotidase surE 2 OS=Chlamydophila caviae GN=... [more]
SURE_SALRD1.912e-2235.055'-nucleotidase surE OS=Salinibacter ruber (strain... [more]
SURE_PROM41.912e-2229.715'-nucleotidase surE OS=Prochlorococcus marinus (s... [more]
SURE_HELAH1.912e-2238.395'-nucleotidase surE OS=Helicobacter acinonychis (... [more]
SURE_CYAA51.912e-2236.365'-nucleotidase surE OS=Cyanothece sp. (strain ATC... [more]
SURE_AGRVS1.912e-2238.075'-nucleotidase surE OS=Agrobacterium vitis (strai... [more]
SURE_PETMO2.498e-2239.095'-nucleotidase surE OS=Petrotoga mobilis (strain ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA29CD08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA29CD08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918229 ID=FC918229; Name=FC918229; organism=Citrus clementina; type=EST; length=903bp
CGCACTACTAAGGACTAACAATTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCGTCGTCTTGGACCGAACAATCCTGTAGCCGGAGGAAGAAATGGAGC
GTCGTGGAATCGCTATTGTTAACTCCGATCACAAGCCAACGATTATGGTC
ACCAACGACGACGGGATCGACGCGCCTGGTTTGCGTTCCCTCGTCCGCGT
TCTCGTCTCCACCAATCGCTACACCGTCCAAGTCTGCGCCCCCGATTCAG
AAAAATCGGCTGTTAGTCATAGTATTACTTGGCGTCACCCAATTTCGGCC
AGACCAGCAGATTTTGATGGAGTTACCGCCTATGCCGTGTCTGATATATA
TATTTCAGGAACTCCAGCAGATTGTGCATCGTTGGGTGTCTCGCAAGCAC
TCTTTCCTTCGGTCCCTGACCTGGTAATCAGTGGCATAAACATGGGTAGC
AACTGTGGTTATCATGTTGTTTACTCTGGGACAGTTGCAGGTGCTCGAGA
GGCTTTCTTTCATGGTGTACCGTCTGTCTCTATATCATACGACTGGGTTG
GAGGTAAGAGCAATGTTAATGATTACACACTTGCTGCTGAGGCTTGTTTA
CCTATTATAAATGCAATACTGGCCGAGATCAGGAATCAAACTTATCCTGA
AAGATGCTTTCTAAACATAGATCTACCTACAGATATTCCTAATAATAAGG
GGTATAAACTTACTAAGCAGGGTACGAGCATATTCAAAATGGGGTGGAGA
CGAGTCACTTCTGAGATGCAAGGAGGGAAGATGTTATCAACAATGACAAT
GGACACAGATTCAGCAGTTACAATTGAAACAGATACATCTACCCCATTGG
AAGAAGACCTTCTGTTTCGTAGGGAGGTAAGAGGGGGCCACATTGCTGAT
CCT
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