FC918229

Overview
NameFC918229
Unique NameFC918229
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length903
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC918229 vs. ExPASy Swiss-Prot
Match: SURE_METNO (5'-nucleotidase surE OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=surE PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.262e-22
Identity = 66/164 (40.24%), Postives = 91/164 (55.49%), Query Frame = 1
Query:  142 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSDIYISGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDW-VGGKSNVNDYTLAAEACLPIINAILAEI 630
            I+VTNDDGI APGL+ L  +    +   V V AP++++S VSHS++   P+  R          A +   + GTP+DC  +GV   L    PDLV+SG+N G N    V YSGTVAGA E    GV S+++S  + VGG++NV  +T A      I   + A I
Sbjct:    3 ILVTNDDGIHAPGLKVLEEIARELSD-DVWVVAPETDQSGVSHSLSLNDPLRLRRV--------AETRFAVKGTPSDCVIMGVRHILKERGPDLVLSGVNRGQNVAEDVTYSGTVAGAMEGTILGVRSIALSQAYGVGGRANVKWHTAAEHGARTIRRILEAGI 157          
BLAST of FC918229 vs. ExPASy Swiss-Prot
Match: SURE_HELPY (5'-nucleotidase surE OS=Helicobacter pylori GN=surE PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.262e-22
Identity = 75/203 (36.95%), Postives = 107/203 (52.71%), Query Frame = 1
Query:  142 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSDIYISGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYT-LAAEACLPIINAILAEIRNQTYP--ERCFLNIDLPT-DIPNNKGYKLTKQGTSIFK 738
            I++TNDDG  A G+++L + L       + V AP  EKSA S  IT   P+ A          Y + D    GTP+DC  L +++       DLVISGIN+GSN G   +YSGTVAGA E    GVPS++IS       SN N  T L+ +    II  ++  I  + YP   R  LN+++P   +   +G ++T +G  ++K
Sbjct:    4 ILLTNDDGYHAKGIKALEQALEEMAE--IYVVAPKHEKSACSQCITITAPLRAEKIKGKEGRHYRIDD----GTPSDCVYLAINELFKHVCFDLVISGINLGSNMGEDTIYSGTVAGAIEGTIQGVPSIAISQI----LSNKNKNTPLSFDLAQKIIQDLVQNIFTKGYPLKGRKLLNVNVPNCSLQEYQGERITPKGYRLYK 196          
BLAST of FC918229 vs. ExPASy Swiss-Prot
Match: SURE_HELPH (5'-nucleotidase surE OS=Helicobacter pylori (strain HPAG1) GN=surE PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.262e-22
Identity = 75/203 (36.95%), Postives = 107/203 (52.71%), Query Frame = 1
Query:  142 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSDIYISGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYT-LAAEACLPIINAILAEIRNQTYP--ERCFLNIDLPT-DIPNNKGYKLTKQGTSIFK 738
            I++TNDDG  A G+++L + L       + V AP  EKSA S  IT   P+ A          Y + D    GTP+DC  L +++       DLVISGIN+GSN G   +YSGTVAGA E    GVPS++IS       SN N  T L+ +    II  ++  I  + YP   R  LN+++P   +   +G ++T +G  ++K
Sbjct:    4 ILLTNDDGYHAKGIKALEQALEEMAE--IYVVAPKHEKSACSQCITITAPLRAEKIKGKEGRHYRIDD----GTPSDCVYLAINELFKHVCFDLVISGINLGSNMGEDTIYSGTVAGAIEGTIQGVPSIAISQI----LSNKNKNTPLSFDLAQKIIQDLVQNIFTKGYPLKGRKLLNVNVPNCSLQEYQGERITPKGYRLYK 196          
BLAST of FC918229 vs. ExPASy Swiss-Prot
Match: SURE_GRAFK (5'-nucleotidase surE OS=Gramella forsetii (strain KT0803) GN=surE PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.262e-22
Identity = 72/202 (35.64%), Postives = 101/202 (50.00%), Query Frame = 1
Query:  133 KPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSDIYISGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAA--EACLPIINAILAEIRNQTYPERCFLNIDLP-TDIPNNKGYKLTKQGTS 729
            KP I+VTNDDGI APG+R+LV V+       V V APDS +S + H+IT    +           +Y   +   SGTPADC  +   + L    PDL +SGIN GSN   +V+YSGT++ A EA   G+P++  S         + DY+L A  E     I  I   +     P    LN+++P       KG K+ +Q  +
Sbjct:    5 KPLILVTNDDGITAPGIRTLVEVMKELG--DVIVVAPDSPQSGMGHAITISDTLFCEQVTIK--ESYKHKEYSCSGTPADCVKIATQEILHRK-PDLCVSGINHGSNSSINVIYSGTMSAAVEAGIEGIPAIGFS---------LLDYSLNADFEPTRKFIKTITKNVLKNGLPIGVVLNVNIPKLKEAEIKGIKVCRQANA 192          
BLAST of FC918229 vs. ExPASy Swiss-Prot
Match: SURE_DESAD (5'-nucleotidase surE OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=surE PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.262e-22
Identity = 58/134 (43.28%), Postives = 82/134 (61.19%), Query Frame = 1
Query:  142 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSDIYISGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYD 543
            I++TNDDGI A GLR+L   L       VQV AP +E+SAV H+++   P+  +  + DG T   V      GTP DC  LG++  L  + PD+V+SGIN G+N G  ++YSGTV+ A E    G P++++SYD
Sbjct:    3 ILLTNDDGIQAVGLRALYHGLKRAGM-NVQVVAPVAEQSAVGHAVSLSSPLRVKKFEEDGFTGLGVY-----GTPVDCVKLGLT-TLLETKPDIVVSGINSGANVGVDILYSGTVSAATEGALMGYPAMAVSYD 129          
BLAST of FC918229 vs. ExPASy Swiss-Prot
Match: SURE_SILST (5'-nucleotidase surE OS=Silicibacter sp. (strain TM1040) GN=surE PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.261e-22
Identity = 79/256 (30.86%), Postives = 122/256 (47.66%), Query Frame = 1
Query:  142 IMVTNDDGIDAPGLRSLVRVL--VSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSDIYISGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS-YDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN-KGYKLTKQGTSIFKMGWRRVTSE-----------MQGGKMLSTMTMDTDSAVTIETDTS-TPLEEDL 861
            I+VTNDDGI APGL  L ++   ++     V + AP  E+S V H I++ HP         G   +A       G+PADC    +   +  + PDL++SG+N G+N   + +YSGT+ GA E    GVP++++S Y   G +   N +  A      ++  +L+       P R F NI+ P     + KG K+T QG    + G R    E           ++GG    +   +TD+A  ++   S TP+  DL
Sbjct:    3 ILVTNDDGISAPGLAVLEQIATELAGPEGEVWIVAPAFEQSGVGHCISYTHPSILSEL---GPRRFAAE-----GSPADCVLAALHVVMKDTPPDLILSGVNRGNNSAENALYSGTLGGAMEGALQGVPAMALSQYYGSGNRDLENPFEAARAHGAEVVRKLLSATPQNDSPYRLFYNINFPPVAAGDVKGIKVTTQGC---RSGKRFSAEEQFSPNGKRFIWVKGGDQQVSTAPETDAAANLDGFISVTPMRADL 247          
BLAST of FC918229 vs. ExPASy Swiss-Prot
Match: SURE_BEII9 (5'-nucleotidase surE OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=surE PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.261e-22
Identity = 61/147 (41.50%), Postives = 85/147 (57.82%), Query Frame = 1
Query:  142 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSD--IYISGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDW---VGGKSNV 567
            I++TNDDGI+APGL  L R+  S     V V AP+S++S V+HS++   P+  R           +SD    + GTP DC  +GV   L    PDLV+SG+N G N    V+YSGTVAGA E    G+PS+++S  +    GG+S +
Sbjct:    3 ILITNDDGINAPGLAVLERI-ASALSDDVFVVAPESDQSGVAHSLSLSDPLRLRK----------ISDRRFAVKGTPTDCVIMGVRSILIEQKPDLVLSGVNCGQNLAEDVIYSGTVAGAMEGTILGIPSIALSQCYEAGTGGRSGI 138          
BLAST of FC918229 vs. ExPASy Swiss-Prot
Match: SURE_RHOPT (5'-nucleotidase surE OS=Rhodopseudomonas palustris (strain TIE-1) GN=surE PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.564e-22
Identity = 70/195 (35.90%), Postives = 103/195 (52.82%), Query Frame = 1
Query:  142 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSDIYISGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN-KGYKLTKQG 723
            I+ TNDDGI APGL+++ ++  + +   V V AP+ ++S VSHS++   P+  R     G   +AV      GTP DC  +G    L    PDLV+SG+N G N    VVYSGT+AGA E    G+PS ++S ++     N   +  A      II  ++A       P+   +NI+ P   P+  KG  +T+QG
Sbjct:    3 ILCTNDDGIHAPGLKTVEQIARAISD-DVWVVAPELDQSGVSHSLSLNDPLRLREV---GPRHFAVR-----GTPTDCVIMGSRFILKDKAPDLVLSGVNRGRNVAEDVVYSGTIAGALEGTILGLPSFALSQEFTIETRNAPLWETARTHAPDIIRKVMA----AGVPKNTVVNINFPACTPDKVKGVVVTRQG 184          
BLAST of FC918229 vs. ExPASy Swiss-Prot
Match: SURE_RHOPA (5'-nucleotidase surE OS=Rhodopseudomonas palustris GN=surE PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.564e-22
Identity = 70/195 (35.90%), Postives = 103/195 (52.82%), Query Frame = 1
Query:  142 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSDIYISGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN-KGYKLTKQG 723
            I+ TNDDGI APGL+++ ++  + +   V V AP+ ++S VSHS++   P+  R     G   +AV      GTP DC  +G    L    PDLV+SG+N G N    VVYSGT+AGA E    G+PS ++S ++     N   +  A      II  ++A       P+   +NI+ P   P+  KG  +T+QG
Sbjct:    3 ILCTNDDGIHAPGLKTVEQIARAISD-DVWVVAPELDQSGVSHSLSLNDPLRLREV---GPRHFAVR-----GTPTDCVIMGSRFILKDKAPDLVLSGVNRGRNVAEDVVYSGTIAGALEGTILGLPSFALSQEFTIETRNAPLWETARTHAPDIIRKVMA----AGVPKNTVVNINFPACTPDKVKGVVVTRQG 184          
BLAST of FC918229 vs. ExPASy Swiss-Prot
Match: SURE_RHILO (5'-nucleotidase surE OS=Rhizobium loti GN=surE PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.564e-22
Identity = 73/203 (35.96%), Postives = 106/203 (52.22%), Query Frame = 1
Query:  142 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSDIYISGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS--YDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN-KGYKLTKQGTSIFKM 741
            I++TNDDGI A GL SL RV   T    V V AP+ ++S  +HS++   P+  R     G   +AV      GTP DC  +GV + L P  PD+++SGIN G+N    V YSGTVAGA E    G+ S+++S  Y +VG      D  +  E    +  A+L ++     P+   LN++ P  +P    G  +T QG  +  +
Sbjct:    3 ILLTNDDGIHAEGLASLERV-ARTLSDDVWVVAPEQDQSGYAHSLSISEPLRLRKI---GEKHFAVR-----GTPTDCVIMGVKKIL-PGAPDVILSGINSGANIADDVTYSGTVAGAMEGALLGIRSIALSQGYSYVG-----EDRIVPYETTEALAPALLKKLVATPLPDGVLLNVNFPNCLPEEVVGTVVTMQGKLVHSL 190          
The following BLAST results are available for this feature:
BLAST of FC918229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SURE_METNO3.262e-2240.245'-nucleotidase surE OS=Methylobacterium nodulans ... [more]
SURE_HELPY3.262e-2236.955'-nucleotidase surE OS=Helicobacter pylori GN=sur... [more]
SURE_HELPH3.262e-2236.955'-nucleotidase surE OS=Helicobacter pylori (strai... [more]
SURE_GRAFK3.262e-2235.645'-nucleotidase surE OS=Gramella forsetii (strain ... [more]
SURE_DESAD3.262e-2243.285'-nucleotidase surE OS=Desulfovibrio salexigens (... [more]
SURE_SILST4.261e-2230.865'-nucleotidase surE OS=Silicibacter sp. (strain T... [more]
SURE_BEII94.261e-2241.505'-nucleotidase surE OS=Beijerinckia indica subsp.... [more]
SURE_RHOPT5.564e-2235.905'-nucleotidase surE OS=Rhodopseudomonas palustris... [more]
SURE_RHOPA5.564e-2235.905'-nucleotidase surE OS=Rhodopseudomonas palustris... [more]
SURE_RHILO5.564e-2235.965'-nucleotidase surE OS=Rhizobium loti GN=surE PE=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA29CD08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA29CD08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918229 ID=FC918229; Name=FC918229; organism=Citrus clementina; type=EST; length=903bp
CGCACTACTAAGGACTAACAATTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCGTCGTCTTGGACCGAACAATCCTGTAGCCGGAGGAAGAAATGGAGC
GTCGTGGAATCGCTATTGTTAACTCCGATCACAAGCCAACGATTATGGTC
ACCAACGACGACGGGATCGACGCGCCTGGTTTGCGTTCCCTCGTCCGCGT
TCTCGTCTCCACCAATCGCTACACCGTCCAAGTCTGCGCCCCCGATTCAG
AAAAATCGGCTGTTAGTCATAGTATTACTTGGCGTCACCCAATTTCGGCC
AGACCAGCAGATTTTGATGGAGTTACCGCCTATGCCGTGTCTGATATATA
TATTTCAGGAACTCCAGCAGATTGTGCATCGTTGGGTGTCTCGCAAGCAC
TCTTTCCTTCGGTCCCTGACCTGGTAATCAGTGGCATAAACATGGGTAGC
AACTGTGGTTATCATGTTGTTTACTCTGGGACAGTTGCAGGTGCTCGAGA
GGCTTTCTTTCATGGTGTACCGTCTGTCTCTATATCATACGACTGGGTTG
GAGGTAAGAGCAATGTTAATGATTACACACTTGCTGCTGAGGCTTGTTTA
CCTATTATAAATGCAATACTGGCCGAGATCAGGAATCAAACTTATCCTGA
AAGATGCTTTCTAAACATAGATCTACCTACAGATATTCCTAATAATAAGG
GGTATAAACTTACTAAGCAGGGTACGAGCATATTCAAAATGGGGTGGAGA
CGAGTCACTTCTGAGATGCAAGGAGGGAAGATGTTATCAACAATGACAAT
GGACACAGATTCAGCAGTTACAATTGAAACAGATACATCTACCCCATTGG
AAGAAGACCTTCTGTTTCGTAGGGAGGTAAGAGGGGGCCACATTGCTGAT
CCT
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