FC918229

Overview
NameFC918229
Unique NameFC918229
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length903
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC918229 vs. ExPASy Swiss-Prot
Match: SURE_CYAP4 (5'-nucleotidase surE OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=surE PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.259e-23
Identity = 72/198 (36.36%), Postives = 105/198 (53.03%), Query Frame = 1
Query:  142 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPAD---FDGVTAYAVSDIYISGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPT-DIPNNKGYKLTKQG 723
            ++++NDDGI +PG+R+L   L +     + VC PD E+SA  H +T   PI A          V A+A S     GTP+DC  L +  AL  S+PD V+SGIN GSN G  ++YSGTV+ A E    G+PS+++S         V ++  AA         +LA++ +   PE   LNI++P        G  +T+QG
Sbjct:    3 LLLSNDDGIFSPGIRTLADTLAAAGHEVMVVC-PDRERSATGHGLTLFDPIRAEAVASLFHPSVKAWACS-----GTPSDCIKLALG-ALLDSLPDFVLSGINQGSNLGTDILYSGTVSAAMEGVIEGIPSMALSLT----SFTVREFQPAAN----FARDLLAKLDHTPLPEAMLLNINVPALPAAEIAGVAITRQG 185          
BLAST of FC918229 vs. ExPASy Swiss-Prot
Match: SURE_AGRT5 (5'-nucleotidase surE OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=surE PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.259e-23
Identity = 76/218 (34.86%), Postives = 116/218 (53.21%), Query Frame = 1
Query:  142 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSDIYIS--GTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN-KGYKLTKQGTSIFKMGWRRVTSEMQGGKML 786
            I++TNDDG+ A GL  L R+   T    V + AP++++S ++HS+T   P+  R           VSD + +  GTP DC  +G+ + L P  PDLV+SG+N G+N    V YSGT+AGA E    GV S ++S  +  G+  V  + + AE   P    +L ++ N   P+  FLN++ P   P + +G  +T QG    K+ +     E Q G+ L
Sbjct:    3 ILLTNDDGVHAEGLAVLERI-ARTLSDDVWIVAPETDQSGLAHSLTLSEPLRLRK----------VSDKHFALRGTPTDCVIMGIREVL-PEKPDLVLSGVNAGANMADDVTYSGTIAGAIEGTLQGVRSFALSQAFSHGEGRVVPWEV-AETYAP---DLLRKLMNVDLPDGTFLNLNFPNCAPKDMQGVSVTGQG----KLDFGLTVEERQDGRGL 200          
BLAST of FC918229 vs. ExPASy Swiss-Prot
Match: SURE_ACAM1 (5'-nucleotidase surE OS=Acaryochloris marina (strain MBIC 11017) GN=surE PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.259e-23
Identity = 79/199 (39.70%), Postives = 103/199 (51.76%), Query Frame = 1
Query:  142 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPAD---FDGVTAYAVSDIYISGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN--KGYKLTKQG 723
            I+V NDDGI APG+R+L   L   +  TV VC PD E+SA  H +T   PI A        D VTA+A S     GTPADC  L +  AL  S PD V+SGIN G N G  V+YSGTV+ A E    G+ S++ SY      S+  D      A       +L  +      E   LN+++P  +P +  +G  LT+QG
Sbjct:    3 ILVGNDDGIFAPGVRALANTLAPDHEVTV-VC-PDRERSATGHGLTIHQPIRAEQVQSMFVDQVTAWACS-----GTPADCIKLALG-ALLDSPPDFVLSGINQGPNLGTDVLYSGTVSAAMEGVIEGITSIAFSY------SSFTDQQFQPAANFG--QQLLEHLIQHPLSEPMLLNVNVPA-VPADQIQGVALTRQG 184          
BLAST of FC918229 vs. ExPASy Swiss-Prot
Match: SURE1_THET2 (5'-nucleotidase surE 1 OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=surE1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.259e-23
Identity = 79/202 (39.11%), Postives = 106/202 (52.48%), Query Frame = 1
Query:  142 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPIS---ARPADFDGVTAYAVSDIYISGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQGTSIFK 738
            I+V+NDDGI +PG+++L   + +     V V APD E+SAV H IT R P+     + A F  + AY V      GTPADC  LGV        PDLV+SGIN+G N G  + +SGTVA A E    G+PS++ S D  G    V D+  AA   L I  A    +  +  P    LN++ P   P  KG  +T+  T  F+
Sbjct:    3 ILVSNDDGIFSPGIKALGLAMRALGE--VFVVAPDMEQSAVGHGITVRRPLRFKHTQSAGFGEIPAYRVD-----GTPADCVVLGVHLL---GRPDLVVSGINLGVNLGLDLTHSGTVAAALEGASLGIPSIAFSLDTSG---EVLDFQEAARWALAIARA----VGERGLPPGVLLNVNFPASRP--KGLLVTRLSTHRFE 185          
BLAST of FC918229 vs. ExPASy Swiss-Prot
Match: SURE_SYNR3 (5'-nucleotidase surE OS=Synechococcus sp. (strain RCC307) GN=surE PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.951e-23
Identity = 69/193 (35.75%), Postives = 106/193 (54.92%), Query Frame = 1
Query:  142 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPAD---FDGVTAYAVSDIYISGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS---YDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKG 702
            I+++NDDG+ A G+++L     +   ++V V  PD E+SA  H +T + PI A  AD    DG+ A+A +     GTP+DC  L + + L  + PDLV+SGIN G N G  V+YSGTVA A E    G+P++++S   +DW         +  AA   + +  + LA      +PE   LN+++P   P+  G
Sbjct:    7 ILISNDDGVFAEGIKALAHE-AARRGHSVTVVCPDQERSATGHGLTLQSPIRAEQADGLFADGIRAWACT-----GTPSDCVKLALGK-LLEAPPDLVLSGINHGPNLGSDVIYSGTVAAAMEGTLEGLPALAVSSACFDW-------RQFDGAAVQAMDVAESALA----GGWPEGLLLNLNVPAVPPDRIG 181          
BLAST of FC918229 vs. ExPASy Swiss-Prot
Match: SURE_METCA (5'-nucleotidase surE OS=Methylococcus capsulatus GN=surE PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.951e-23
Identity = 74/196 (37.76%), Postives = 107/196 (54.59%), Query Frame = 1
Query:  142 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSDIYISGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN--KGYKLTKQG 723
            I+++NDDG  APGLR+L   L    + TV   AP+  +S  S+S+T   P+ A  A+ +G        I + GTP DC  L ++  L  S PD+V +GIN G+N G  V+YSGTVA A E  F G+P+V+IS        N   +  AA+  +     +L  IR    P    LN+++P DIP +  +GY+ T+ G
Sbjct:    3 ILLSNDDGYAAPGLRALAAALSPLAKITV--VAPERNRSGASNSLTLERPLRATRAE-NGF-------IRVDGTPTDCVHLAIT-GLLDSEPDMVFAGINHGANLGDDVIYSGTVAAATEGRFLGLPAVAISL----AAHNPEHFETAAQVAI----ELLERIRENPLPADTILNVNVP-DIPPDELRGYRATRLG 178          
BLAST of FC918229 vs. ExPASy Swiss-Prot
Match: SURE_HELPJ (5'-nucleotidase surE OS=Helicobacter pylori J99 GN=surE PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.951e-23
Identity = 76/203 (37.44%), Postives = 108/203 (53.20%), Query Frame = 1
Query:  142 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSDIYISGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYT-LAAEACLPIINAILAEIRNQTYP--ERCFLNIDLPT-DIPNNKGYKLTKQGTSIFK 738
            I++TNDDG  A G+++L + L   N   + V AP  EKSA S  IT   P+ A          Y + D    GTP+DC  L +++       DLVISGIN+GSN G   +YSGTVAGA E    GVPS++IS       SN N  T L+ +    II  ++  +  + YP   R  LN+++P   +   KG ++T +G  ++K
Sbjct:    4 ILLTNDDGYHAKGIKALEQAL--ENMAEIYVVAPKHEKSACSQCITITAPLRAEKIKGKEGRHYRIDD----GTPSDCVYLAINELFKHVCFDLVISGINLGSNMGEDTIYSGTVAGAIEGTIQGVPSIAISQI----LSNKNKNTPLSFDLAQKIIQDLVQNVFTKGYPLKGRKLLNVNVPNCSLQEYKGERITPKGYRLYK 196          
BLAST of FC918229 vs. ExPASy Swiss-Prot
Match: SURE_DESRM (5'-nucleotidase surE OS=Desulfotomaculum reducens (strain MI-1) GN=surE PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.951e-23
Identity = 73/194 (37.63%), Postives = 108/194 (55.67%), Query Frame = 1
Query:  142 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSDIYISGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQG 723
            I+++NDDGI A G+  L R  + T    V V APD E+SA  H IT   P+ A+   F    A       I GTPADC  LG+ ++L  + PDLV+SGIN+G N G  V+YSGTV+ A EA  + VP++++S   +     +N Y +AA+     +   +  ++     E   LNI++P +  N +G K+T+ G
Sbjct:    3 ILISNDDGIYADGIGQL-RKAMETIASEVYVVAPDRERSACGHGITVTRPLRAKVHPFKSGHA---KGWVIDGTPADCVKLGL-ESLLENPPDLVVSGINLGPNLGTDVLYSGTVSAAYEAIINHVPAIAVS---LAAWEELN-YQVAAD----FMKDFIPMLKEHPMGEGMLLNINIPNNY-NGRGIKVTRLG 182          
BLAST of FC918229 vs. ExPASy Swiss-Prot
Match: SURE_BRUSU (5'-nucleotidase surE OS=Brucella suis GN=surE PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.951e-23
Identity = 73/197 (37.06%), Postives = 105/197 (53.30%), Query Frame = 1
Query:  142 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSDIYISGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS--YDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN-KGYKLTKQG 723
            I++TNDDGI A GL  L R+    +   V V AP++++S ++HS+T   P+  R  D             + GTP DC  +GV   L P  PDLV+SG+N G+N    V YSGTVAGA E    GV ++++S  Y++ G +  V   T  AEA  P    ++  +    +PE   LN++ P   P   KG ++T QG
Sbjct:    3 ILLTNDDGIHAEGLAVLERIARKLSD-DVWVVAPETDQSGLAHSLTLSEPLRLRQID--------ARHFALRGTPTDCVIMGVRHVL-PGAPDLVLSGVNSGANMADDVTYSGTVAGAMEGTLLGVRAIALSQEYEYAGDRRIVPWET--AEAHAP---ELIGRLMEAGWPEGVLLNLNFPNCAPEEVKGVRVTAQG 184          
BLAST of FC918229 vs. ExPASy Swiss-Prot
Match: SURE_BRUO2 (5'-nucleotidase surE OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=surE PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.951e-23
Identity = 73/197 (37.06%), Postives = 105/197 (53.30%), Query Frame = 1
Query:  142 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSDIYISGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS--YDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN-KGYKLTKQG 723
            I++TNDDGI A GL  L R+    +   V V AP++++S ++HS+T   P+  R  D             + GTP DC  +GV   L P  PDLV+SG+N G+N    V YSGTVAGA E    GV ++++S  Y++ G +  V   T  AEA  P    ++  +    +PE   LN++ P   P   KG ++T QG
Sbjct:    3 ILLTNDDGIHAEGLAVLERIARKLSD-DVWVVAPETDQSGLAHSLTLSEPLRLRQID--------ARHFALRGTPTDCVIMGVRHVL-PGAPDLVLSGVNSGANMADDVTYSGTVAGAMEGTLLGVRAIALSQEYEYAGDRRIVPWET--AEAHAP---ELIGRLMEAGWPEGVLLNLNFPNCAPEEVKGVRVTAQG 184          
The following BLAST results are available for this feature:
BLAST of FC918229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SURE_CYAP42.259e-2336.365'-nucleotidase surE OS=Cyanothece sp. (strain PCC... [more]
SURE_AGRT52.259e-2334.865'-nucleotidase surE OS=Agrobacterium tumefaciens ... [more]
SURE_ACAM12.259e-2339.705'-nucleotidase surE OS=Acaryochloris marina (stra... [more]
SURE1_THET22.259e-2339.115'-nucleotidase surE 1 OS=Thermus thermophilus (st... [more]
SURE_SYNR32.951e-2335.755'-nucleotidase surE OS=Synechococcus sp. (strain ... [more]
SURE_METCA2.951e-2337.765'-nucleotidase surE OS=Methylococcus capsulatus G... [more]
SURE_HELPJ2.951e-2337.445'-nucleotidase surE OS=Helicobacter pylori J99 GN... [more]
SURE_DESRM2.951e-2337.635'-nucleotidase surE OS=Desulfotomaculum reducens ... [more]
SURE_BRUSU2.951e-2337.065'-nucleotidase surE OS=Brucella suis GN=surE PE=3... [more]
SURE_BRUO22.951e-2337.065'-nucleotidase surE OS=Brucella ovis (strain ATCC... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA29CD08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA29CD08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918229 ID=FC918229; Name=FC918229; organism=Citrus clementina; type=EST; length=903bp
CGCACTACTAAGGACTAACAATTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCGTCGTCTTGGACCGAACAATCCTGTAGCCGGAGGAAGAAATGGAGC
GTCGTGGAATCGCTATTGTTAACTCCGATCACAAGCCAACGATTATGGTC
ACCAACGACGACGGGATCGACGCGCCTGGTTTGCGTTCCCTCGTCCGCGT
TCTCGTCTCCACCAATCGCTACACCGTCCAAGTCTGCGCCCCCGATTCAG
AAAAATCGGCTGTTAGTCATAGTATTACTTGGCGTCACCCAATTTCGGCC
AGACCAGCAGATTTTGATGGAGTTACCGCCTATGCCGTGTCTGATATATA
TATTTCAGGAACTCCAGCAGATTGTGCATCGTTGGGTGTCTCGCAAGCAC
TCTTTCCTTCGGTCCCTGACCTGGTAATCAGTGGCATAAACATGGGTAGC
AACTGTGGTTATCATGTTGTTTACTCTGGGACAGTTGCAGGTGCTCGAGA
GGCTTTCTTTCATGGTGTACCGTCTGTCTCTATATCATACGACTGGGTTG
GAGGTAAGAGCAATGTTAATGATTACACACTTGCTGCTGAGGCTTGTTTA
CCTATTATAAATGCAATACTGGCCGAGATCAGGAATCAAACTTATCCTGA
AAGATGCTTTCTAAACATAGATCTACCTACAGATATTCCTAATAATAAGG
GGTATAAACTTACTAAGCAGGGTACGAGCATATTCAAAATGGGGTGGAGA
CGAGTCACTTCTGAGATGCAAGGAGGGAAGATGTTATCAACAATGACAAT
GGACACAGATTCAGCAGTTACAATTGAAACAGATACATCTACCCCATTGG
AAGAAGACCTTCTGTTTCGTAGGGAGGTAAGAGGGGGCCACATTGCTGAT
CCT
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