FC918250

Overview
NameFC918250
Unique NameFC918250
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP446_ARATH (Pentatricopeptide repeat-containing protein At5g65570 OS=Arabidopsis thaliana GN=PCMP-H47 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.580e-18
Identity = 58/222 (26.13%), Postives = 109/222 (49.10%), Query Frame = 1
Query:  187 FTDYRLPRQAKQLHARLIFHSVAPDN-FLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            F+D  L ++A++ H   +   +   N F+ S L++ Y K     +A+ V D++  K +    A+++ YS     T+ ++ F S+     + ++P+ +T   VL +  G  +D    K +H  +++ G +S+L     L+T Y RC  V  +  +F  +   + VSW S+I+G  Q G  E     FR+M+   + +P+  T+ S L  C   +    G ++H
Sbjct:  175 FSDLSLEKEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLV---EKVQPNEYTYASVLISC-GNLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLRVFKCIEYPNQVSWTSLISGLVQNGREEMALIEFRKMMRDSI-KPNSFTLSSALRGCSNLAMFEEGRQIH 391          

HSP 2 Score: 85.1149 bits (209), Expect = 5.379e-16
Identity = 60/229 (26.20%), Postives = 113/229 (49.34%), Query Frame = 1
Query:  166 YGRLIQHFTDYRLPRQAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLD-SSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            + +L++   D R     K + A ++  S  P     SKL++   K   +  AR VFD ++ + I ++N+++     H    + + ++  + ++   ++ PD +T++ V KA + L  +   A+  H   +  GL+ S++F+ + L+  Y +      A+ + D +  +D+V   ++I GYSQ G   E    F+ ML   V +P+  T  SVL +CG   DI  G  +H
Sbjct:   68 FSQLLRQCIDERSISGIKTIQAHML-KSGFPAEISGSKLVDASLKCGDIDYARQVFDGMSERHIVTWNSLIAYLIKHRRSKEAVEMYRLMITN---NVLPDEYTLSSVFKAFSDLSLEKE-AQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEKV-QPNEYTYASVLISCGNLKDIGNGKLIH 290          

HSP 3 Score: 84.3445 bits (207), Expect = 9.175e-16
Identity = 49/132 (37.12%), Postives = 75/132 (56.82%), Query Frame = 1
Query:  457 LKPDNFTITCVLKALTGL--FRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEV 846
            +KP++FT++  L+  + L  F + R   ++H  V + G D   +  +GLI  Y +C     AR +FD +S  D++S N+MI  Y+Q GF  E   LF  M+N   L+P+ VTV+SVL AC  S  +  G E+
Sbjct:  364 IKPNSFTLSSALRGCSNLAMFEEGR---QIHGIVTKYGFDRDKYAGSGLIDLYGKCGCSDMARLVFDTLSEVDVISLNTMIYSYAQNGFGREALDLFERMINLG-LQPNDVTVLSVLLACNNSRLVEEGCEL 491          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP169_ARATH (Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.580e-18
Identity = 59/213 (27.70%), Postives = 111/213 (52.11%), Query Frame = 1
Query:  217 KQLHARLIFHSVAPDNFLASKLINF--YSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            KQ+ A++I + +  D F +S+LI F   S+S  L  +  +   I + +IFS+N  +  +S  +   ++  L+  +      + +PD+FT   + K    L R S     +  +VL+  L+    + N  I  ++ C D+ +AR +FD    RD+VSWN +I GY + G  E+   +++ ++ S  ++PD VT++ ++ +C    D+  G E +
Sbjct:   70 KQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADL-RLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYK-LMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFY 280          

HSP 2 Score: 88.1965 bits (217), Expect = 6.354e-17
Identity = 55/219 (25.11%), Postives = 102/219 (46.58%), Query Frame = 1
Query:  283 INFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVL------------------------------RPDGVTVVSVLHACGQSSDIVFGMEVH 849
            I+ ++    +  AR VFD+   + + S+N ++  Y         + ++  + S   + +KPD+ T+  ++ + + +  D    KE + YV   GL  ++ LVN L+  +S+C D+  AR +FD +  R IVSW +MI+GY++ G  +  + LF +M    V+                              +PD +T++  L AC Q   +  G+ +H
Sbjct:  198 IHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMES---EGVKPDDVTMIGLVSSCS-MLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIH 412          

HSP 3 Score: 72.0182 bits (175), Expect = 4.712e-12
Identity = 51/206 (24.76%), Postives = 101/206 (49.03%), Query Frame = 1
Query:  229 ARLIFHSVAPDNFLA-SKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGME 843
            AR IF ++     ++ + +I+ Y++   L  +R +FD +  K +  +NAM+          D L LF  + +S   + KPD  T+   L A + L         +H Y+ +  L  ++ L   L+  Y++C +++ A ++F G+  R+ +++ ++I G +  G      + F EM+++ +  PD +T + +L AC     I  G +
Sbjct:  311 ARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTS---NTKPDEITMIHCLSACSQLGALD-VGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGI-APDEITFIGLLSACCHGGMIQTGRD 511          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PPR13_ARATH (Pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.369e-18
Identity = 64/195 (32.82%), Postives = 93/195 (47.69%), Query Frame = 1
Query:  229 ARLIFHSVAPDNFLA-SKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHAC 810
            ARL+F  +   N +  + +I+ Y +S  +  A  +FDK+  + + S+ AM+  +       + L  F  +  S    +KPD   I   L A T L   S F   VH YVL     +++ + N LI  Y RC  V  AR +F  M  R +VSWNS+I G++  G   E    FR+M      +PD VT    L AC
Sbjct:  128 ARLVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQIS---GVKPDYVAIIAALNACTNLGALS-FGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKM-QEKGFKPDAVTFTGALTAC 317          

HSP 2 Score: 69.3218 bits (168), Expect = 3.054e-11
Identity = 58/193 (30.05%), Postives = 90/193 (46.63%), Query Frame = 1
Query:  283 INFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAY-SVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLF-RDSRFAKE--VHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            IN  +++  L +A   F  +T   +   +   IA  S    +T        L   Y+  L  D   +  V  A+ G++ +  RF K   V  Y+     D +    N +I  Y R   V +A  +FD M  RD++SW +MI G+ + G+ EE    FREM  S V +PD V +++ L+AC     + FG+ VH
Sbjct:   43 INLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGCGDFTSGSEALGDLLHGYACKLGLDRNHVM-VGTAIIGMYSKRGRFKKARLVFDYME----DKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGV-KPDYVAIIAALNACTNLGALSFGLWVH 229          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PPR73_ARATH (Pentatricopeptide repeat-containing protein At1g43980, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E58 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.400e-18
Identity = 59/219 (26.94%), Postives = 108/219 (49.32%), Query Frame = 1
Query:  190 TDYRLPRQAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEV 846
            +D R   + KQ  A  I      ++ +    I+ +SK N L  +  +F ++        N+M+ +YS H    D LRLF     + +Q ++PD FT + VL ++  +  D     +VHS V++ G D    +   L+  Y +   V  A  +F     +D++ WN++I G ++     E  A+F ++L +  L+PD VT++ +L AC  +  +  G+++
Sbjct:  258 SDLRELSKGKQALALCIKMGFLSNSIVLGAGIDMFSKCNRLDDSVKLFRELEKWDSVLCNSMIGSYSWHCCGEDALRLF---ILAMTQSVRPDKFTFSSVLSSMNAVMLDH--GADVHSLVIKLGFDLDTAVATSLMEMYFKTGSVDLAMGVFAKTDGKDLIFWNTVIMGLARNSRAVESLAIFNQLLMNQSLKPDRVTLMGILVACCYAGFVNEGIQI 471          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP425_ARATH (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.400e-18
Identity = 70/276 (25.36%), Postives = 117/276 (42.39%), Query Frame = 1
Query:  175 LIQHFTDYRLPRQAKQLHARLIFHSVAPDNFLASKLINFYSKSN----SLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKAL--TGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCD---------------------------------------------DVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            L     + R  R   Q+HA  I      D   A++++ F + S+     L  A  +F+++  ++ FS+N ++  +S  D     + +         + ++P+ FT   VLKA   TG  ++    K++H   L+ G     F+++ L+  Y  C                                              D  +AR LFD M  R +VSWN+MI+GYS  GF+++   +FREM    + RP+ VT+VSVL A  +   +  G  +H
Sbjct:   26 LFPQINNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEG---KQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDI-RPNYVTLVSVLPAISRLGSLELGEWLH 297          

HSP 2 Score: 78.1814 bits (191), Expect = 6.576e-14
Identity = 47/177 (26.55%), Postives = 91/177 (51.41%), Query Frame = 1
Query:  280 LINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHAC 810
            +I+ Y +      AR +FDK+  +S+ S+N M+  YS++  + D + +F  +      D++P+  T+  VL A++ L       + +H Y    G+     L + LI  YS+C  +  A  +F+ +   ++++W++MI G++  G   +    F +M  + V RP  V  +++L AC
Sbjct:  214 MIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKG---DIRPNYVTLVSVLPAISRL-GSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGV-RPSDVAYINLLTAC 385          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP345_ARATH (Pentatricopeptide repeat-containing protein At4g32430, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.400e-18
Identity = 58/216 (26.85%), Postives = 111/216 (51.39%), Query Frame = 1
Query:  208 RQAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKE---VHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEV 846
            ++  ++H   I      +  + +  I  Y+K  +L  A+  F+ IT + I S+NAM+  ++ +    + L++F S A+    +  P+ +T   VL A+   F +    K+    H+++L+ GL+S   + + L+  Y++  ++  +  +F+ MS ++   W S+I+ YS  G +E    LF +M+   V  PD VT +SVL AC +   +  G E+
Sbjct:  389 KEGLKIHGLCIKTGFVSEPSVGNSFITLYAKFEALEDAKKAFEDITFREIISWNAMISGFAQNGFSHEALKMFLSAAA----ETMPNEYTFGSVLNAIA--FAEDISVKQGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGNIDESEKVFNEMSQKNQFVWTSIISAYSSHGDFETVMNLFHKMIKENVA-PDLVTFLSVLTACNRKGMVDKGYEI 597          

HSP 2 Score: 81.6481 bits (200), Expect = 5.947e-15
Identity = 53/195 (27.18%), Postives = 94/195 (48.21%), Query Frame = 1
Query:  268 LASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQ-GGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            +++ ++  Y K+     A  +F+ +    + S+N +L  +  + +  + +    S    +      D FT +  L    G         ++ S V++ GL+S L + N  IT YSR      AR +FD MS +D++SWNS+++G SQ G F  E   +FR+M+   V   D V+  SV+  C   +D+    ++H
Sbjct:  113 VSNAVMGMYRKAGRFDNALCIFENLVDPDVVSWNTILSGFDDNQIALNFVVRMKSAGVVF------DAFTYSTALSFCVGS-EGFLLGLQLQSTVVKTGLESDLVVGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSLLSGLSQEGTFGFEAVVIFRDMMREGV-ELDHVSFTSVITTCCHETDLKLARQIH 299          

HSP 3 Score: 77.0258 bits (188), Expect = 1.465e-13
Identity = 53/211 (25.12%), Postives = 110/211 (52.13%), Query Frame = 1
Query:  220 QLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMY-TDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            QL + ++   +  D  + +  I  YS+S S   AR VFD+++ K + S+N++L   S    +  + + +F  +     + ++ D+ + T V+        D + A+++H   ++ G +S L + N L++ YS+C  + + +++F  MS R++VSW +MI+        ++  ++F  M    V  P+ VT V +++A   +  I  G+++H
Sbjct:  195 QLQSTVVKTGLESDLVVGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSLLSGLSQEGTFGFEAVVIFRDM---MREGVELDHVSFTSVITTCCH-ETDLKLARQIHGLCIKRGYESLLEVGNILMSRYSKCGVLEAVKSVFHQMSERNVVSWTTMISSNK-----DDAVSIFLNMRFDGVY-PNEVTFVGLINAVKCNEQIKEGLKIH 395          

HSP 4 Score: 69.707 bits (169), Expect = 2.339e-11
Identity = 52/215 (24.19%), Postives = 105/215 (48.84%), Query Frame = 1
Query:  184 HFTDYRLPRQAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDI 828
            H TD +L RQ   L  +  + S+     + + L++ YSK   L   + VF +++ +++ S+  M+ +        D + +F ++       + P+  T   ++ A+       +   ++H   ++ G  S   + N  IT Y++ + +  A+  F+ ++ R+I+SWN+MI+G++Q GF  E   +F  +  +    P+  T  SVL+A   + DI
Sbjct:  288 HETDLKLARQIHGLCIKRGYESLLE---VGNILMSRYSKCGVLEAVKSVFHQMSERNVVSWTTMISSNK-----DDAVSIFLNMRFD---GVYPNEVTFVGLINAVK-CNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITLYAKFEALEDAKKAFEDITFREIISWNAMISGFAQNGFSHEALKMF--LSAAAETMPNEYTFGSVLNAIAFAEDI 488          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP261_ARATH (Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.400e-18
Identity = 61/182 (33.52%), Postives = 95/182 (52.20%), Query Frame = 1
Query:  211 QAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCD--DVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREM 750
            Q KQLHA++I  ++  D  +A KLI+  S       A  VF+++   ++   N+++ A++ +        +FS +       L  DNFT   +LKA +G        K +H+++ + GL S +++ N LI  YSRC    V  A  LF+ MS RD VSWNSM+ G  + G   + + LF EM
Sbjct:   34 QVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRF---GLFADNFTYPFLLKACSGQ-SWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEM 211          

HSP 2 Score: 84.7297 bits (208), Expect = 7.025e-16
Identity = 55/194 (28.35%), Postives = 101/194 (52.06%), Query Frame = 1
Query:  274 SKLINFYSKSNSLIQARHVFDK--ITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALT--GLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGME 843
            S ++  YSK+  +  AR +FDK  + +K++ ++  ++  Y+   +  +  RL   + +S    LK D   +  +L A T  GL         +HS + R  L S+ +++N L+  Y++C ++  A  +F+ +  +D+VSWN+M+ G    G  +E   LF  M    + RPD VT ++VL +C  +  I  G++
Sbjct:  251 STMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVAS---GLKFDAAAVISILAACTESGLLS---LGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGI-RPDKVTFIAVLCSCNHAGLIDEGID 437          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP229_ARATH (Pentatricopeptide repeat-containing protein At3g14330 OS=Arabidopsis thaliana GN=PCMP-H57 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 5.747e-18
Identity = 61/197 (30.96%), Postives = 103/197 (52.28%), Query Frame = 1
Query:  268 LASKLINFYSKSNSLIQARHVFDKITSKSIFS---YNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            L SKLI  +S    L  AR +FD +T  S+ +   + AM I YS +    D L ++  +  S+   ++P NF+I+  LKA   L +D R  + +H+ +++        + N L+  Y        AR +FDGMS R++V+WNS+I+  S+     E   LFR+M    ++     T+ ++L AC + + ++ G E+H
Sbjct:  169 LLSKLITLFSVCRRLDLARKIFDDVTDSSLLTEKVWAAMAIGYSRNGSPRDALIVYVDMLCSF---IEPGNFSISVALKACVDL-KDLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDARKVFDGMSERNVVTWNSLISVLSKKVRVHEMFNLFRKM-QEEMIGFSWATLTTILPACSRVAALLTGKEIH 360          

HSP 2 Score: 90.5077 bits (223), Expect = 1.280e-17
Identity = 58/217 (26.73%), Postives = 106/217 (48.85%), Query Frame = 1
Query:  208 RQAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYS----VHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEV 846
            R  + +HA+++      D  + + L+  Y +S     AR VFD ++ +++ ++N+++   S    VH+M+    ++   +       L       + V   LTG        KE+H+ +L+      + L+N L+  Y +C +V  +R +FD M  +D+ SWN M+  Y+  G  EE   LF  M+ S V  PDG+T V++L  C  +    +G+ +
Sbjct:  253 RVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDARKVFDGMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEMIGFSWATLTTILPACSRVAALLTG--------KEIHAQILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFDVMLTKDLASWNIMLNCYAINGNIEEVINLFEWMIESGV-APDGITFVALLSGCSDTGLTEYGLSL 460          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP140_ARATH (Pentatricopeptide repeat-containing protein At2g01510, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.747e-18
Identity = 59/215 (27.44%), Postives = 109/215 (50.70%), Query Frame = 1
Query:  205 PRQAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            P+Q K++HA ++    +  N L ++L+        +  AR VFD++    IF +N +   Y  + +  ++L L+  +       ++PD FT   V+KA++ L  D      +H++V++ G      +   L+  Y +  +++SA  LF+ M  +D+V+WN+ +A   Q G        F +M  +  ++ D  TVVS+L ACGQ   +  G E++
Sbjct:   24 PKQLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYVRNQLPFESLLLYKKMR---DLGVRPDEFTYPFVVKAISQL-GDFSCGFALHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMC-ADAVQFDSFTVVSMLSACGQLGSLEIGEEIY 233          

HSP 2 Score: 88.9669 bits (219), Expect = 3.725e-17
Identity = 55/199 (27.64%), Postives = 96/199 (48.24%), Query Frame = 1
Query:  223 LHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQS 819
            LHA ++ +       +A++L+  Y K   L  A  +F+ +  K + ++NA L            L  F+ + +   Q    D+FT+  +L A  G        +E++    +  +D ++ + N  +  + +C +  +AR LF+ M  R++VSW++MI GY+  G   E   LF  M N   LRP+ VT + VL AC  +
Sbjct:  131 LHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQF---DSFTVVSMLSAC-GQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEG-LRPNYVTFLGVLSACSHA 324          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PPR57_ARATH (Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.506e-18
Identity = 60/200 (30.00%), Postives = 108/200 (54.00%), Query Frame = 1
Query:  229 ARLIFHSVAPDNFLA-SKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLK--ALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQS 819
            AR IF  +   + ++ + L++ Y  S  + +A+ +F ++  K+I S+  M+   + +    + L+LFS +     +  +P ++  +  +K  A+ G + + +   + H+ +L+ G DSSL   N LIT Y++C  V  AR +F  M   D VSWN++IA   Q G   E   ++ EML   + RPD +T+++VL AC  +
Sbjct:  339 ARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKR---EGFEPCDYAFSGAIKSCAVLGAYCNGQ---QYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGI-RPDRITLLTVLTACSHA 531          

HSP 2 Score: 88.5817 bits (218), Expect = 4.865e-17
Identity = 65/247 (26.32%), Postives = 111/247 (44.94%), Query Frame = 1
Query:  226 HARLIFHSVA-PDNFLASKLINFYSKSNSLIQARHVFDK--ITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDD----VASARALFDGMSNRD--------------------------------IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            +AR +F  ++ PD    + +++ Y  S  +  AR VF+K  +  +    YNAM+  +S ++     + LF  +     +  KPDNFT   VL  L  +  D +   + H+  L+ G      + N L++ YS+C      + SAR +FD +  +D                                +V++N+MI+GY   GFY+E   + R M++S +   D  T  SV+ AC  +  +  G +VH
Sbjct:   67 YARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKH---EGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGI-ELDEFTYPSVIRACATAGLLQLGKQVH 309          

HSP 3 Score: 86.6557 bits (213), Expect = 1.849e-16
Identity = 65/225 (28.89%), Postives = 100/225 (44.44%), Query Frame = 1
Query:  208 RQAKQLHARLIFHSVAPDNFLASKLINFYSKSNS----LIQARHVFDKITSKS--------------------------------IFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALT--GLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVL 768
            +Q  Q HA  +         +++ L++ YSK  S    L  AR VFD+I  K                                 + +YNAM+  Y     Y + L +   + SS    ++ D FT   V++A    GL +     K+VH+YVLR   D S    N L++ Y +C     ARA+F+ M  +D+VSWN++++GY   G   E K +F+EM    +L
Sbjct:  166 KQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSS---GIELDEFTYPSVIRACATAGLLQ---LGKQVHAYVLRRE-DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNIL 383          
The following BLAST results are available for this feature:
BLAST of FC918250 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
PP446_ARATH2.580e-1826.13Pentatricopeptide repeat-containing protein At5g65... [more]
PP169_ARATH2.580e-1827.70Pentatricopeptide repeat-containing protein At2g22... [more]
PPR13_ARATH3.369e-1832.82Pentatricopeptide repeat-containing protein At1g05... [more]
PPR73_ARATH4.400e-1826.94Pentatricopeptide repeat-containing protein At1g43... [more]
PP425_ARATH4.400e-1825.36Pentatricopeptide repeat-containing protein At5g48... [more]
PP345_ARATH4.400e-1826.85Pentatricopeptide repeat-containing protein At4g32... [more]
PP261_ARATH4.400e-1833.52Pentatricopeptide repeat-containing protein At3g29... [more]
PP229_ARATH5.747e-1830.96Pentatricopeptide repeat-containing protein At3g14... [more]
PP140_ARATH5.747e-1827.44Pentatricopeptide repeat-containing protein At2g01... [more]
PPR57_ARATH7.506e-1830.00Pentatricopeptide repeat-containing protein At1g25... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA96BA07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA96BA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918250 ID=FC918250; Name=FC918250; organism=Citrus clementina; type=EST; length=849bp
CTTATTGTTATAAGAAAGAAACACCAAGCAAATTAGTGAATTCGGTTTGG
CAGCCAGCAAACCAAATGAATGACGCACGCGAACTCACTATCGTTAAACA
TTCAAAATCTGCGCGCCAACAGTGGCCAAATTCAGCGAGCTCTTCAGACT
CTCGACTGTGGCGCTTACGGCCGACTCATCCAACATTTCACCGACTACCG
CCTTCCTCGCCAAGCCAAGCAACTCCACGCGCGCCTCATCTTCCATTCCG
TTGCACCCGACAACTTCCTCGCATCGAAACTCATCAATTTCTACTCGAAA
TCTAACAGTCTCATTCAAGCGCGACACGTGTTCGATAAAATTACAAGCAA
AAGCATCTTCTCATACAACGCCATGCTTATCGCGTACTCTGTTCACGACA
TGTATACTGATACGTTAAGGTTGTTTTCGTCTTTGGCGTCGTCTTATTCA
CAGGATTTGAAGCCTGATAACTTTACGATTACTTGTGTTTTGAAGGCATT
GACTGGTTTGTTCCGCGACTCGAGATTCGCTAAGGAGGTTCATTCCTATG
TTTTGCGATGTGGGCTTGATTCAAGTTTGTTTCTTGTTAATGGTTTGATA
ACATTTTATTCAAGATGCGATGATGTTGCTTCAGCGAGGGCGTTGTTTGA
TGGAATGTCGAATAGAGATATTGTGTCGTGGAATTCGATGATTGCTGGGT
ATTCCCAAGGAGGGTTTTACGAAGAGTGTAAAGCATTGTTTAGAGAGATG
TTAAACTCACCGGTATTGAGACCGGATGGGGTGACAGTCGTTAGTGTTTT
GCACGCGTGTGGGCAATCTAGTGATATAGTTTTCGGAATGGAAGTGCAT
back to top