FC918250

Overview
NameFC918250
Unique NameFC918250
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14088 contig Ccv1_Contig14088:1..850. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP343_ARATH (Pentatricopeptide repeat-containing protein At4g31070, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E7 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.616e-20
Identity = 63/213 (29.58%), Postives = 108/213 (50.70%), Query Frame = 1
Query:  214 AKQLHARLIFHSVAPDNFLASK-LINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            A+  HA ++      ++ L S  L++ Y K +    A HVFD++  K+  S+ AM+     +  Y   + LF ++     ++L+P+  T+  VL A   L   S   KE+H +  R G  +   L    +T Y RC +V+ +R LF+    RD+V W+SMI+GY++ G   E   L  +M    +   + VT+++++ AC  S+ + F   VH
Sbjct:  179 ARMFHALVLVDERMQESVLLSTALVDMYLKFDDHAAAFHVFDQMEVKNEVSWTAMISGCVANQNYEMGVDLFRAMQR---ENLRPNRVTLLSVLPACVELNYGSSLVKEIHGFSFRHGCHADERLTAAFMTMYCRCGNVSLSRVLFETSKVRDVVMWSSMISGYAETGDCSEVMNLLNQMRKEGI-EANSVTLLAIVSACTNSTLLSFASTVH 387          

HSP 2 Score: 86.2705 bits (212), Expect = 2.415e-16
Identity = 49/201 (24.38%), Postives = 101/201 (50.25%), Query Frame = 1
Query:  217 KQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQS 819
            K++H     H    D  L +  +  Y +  ++  +R +F+    + +  +++M+  Y+     ++ + L + +     + ++ ++ T+  ++ A T     S FA  VHS +L+CG  S + L N LI  Y++C  +++AR +F  ++ +D+VSW+SMI  Y   G   E   +F+ M+       D +  +++L AC  +
Sbjct:  283 KEIHGFSFRHGCHADERLTAAFMTMYCRCGNVSLSRVLFETSKVRDVVMWSSMISGYAETGDCSEVMNLLNQMRK---EGIEANSVTLLAIVSACTNSTLLS-FASTVHSQILKCGFMSHILLGNALIDMYAKCGSLSAAREVFYELTEKDLVSWSSMINAYGLHGHGSEALEIFKGMIKGG-HEVDDMAFLAILSACNHA 478          

HSP 3 Score: 77.411 bits (189), Expect = 1.122e-13
Identity = 57/198 (28.79%), Postives = 96/198 (48.48%), Query Frame = 1
Query:  220 QLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVL-RCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHAC 810
            QLH   +      D  +++ LI+ Y+K +     R VFD++  +   SY +++ +     +  + ++L   +   Y     P +  +  +L   T +   S+ A+  H+ VL    +  S+ L   L+  Y + DD A+A  +FD M  ++ VSW +MI+G      YE    LFR M     LRP+ VT++SVL AC
Sbjct:   79 QLHCLCLKAGADCDTVVSNSLISMYAKFSRKYAVRKVFDEMLHRDTVSYCSIINSCCQDGLLYEAMKLIKEM---YFYGFIPKSELVASLLALCTRMGSSSKVARMFHALVLVDERMQESVLLSTALVDMYLKFDDHAAAFHVFDQMEVKNEVSWTAMISGCVANQNYEMGVDLFRAMQREN-LRPNRVTLLSVLPAC 272          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP235_ARATH (Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.616e-20
Identity = 65/238 (27.31%), Postives = 109/238 (45.80%), Query Frame = 1
Query:  217 KQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNS-------------------------------MIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFG 837
            K+LH  ++   +  + ++ + L+  YS    +  AR VFD+   + +FS+N M+  Y+    Y +++ L   +  +    + P + T+  VL A + + +D    K VH YV  C  + SL L N L+  Y+ C ++  A  +F  M  RD++SW S                               MI GY + G + E   +FREM ++ ++ PD  T+VSVL AC     +  G
Sbjct:  155 KKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNL---VSPTSVTLLLVLSACSKV-KDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMI-PDEFTMVSVLTACAHLGSLEIG 387          

HSP 2 Score: 99.7525 bits (247), Expect = 2.110e-20
Identity = 73/233 (31.33%), Postives = 114/233 (48.93%), Query Frame = 1
Query:  166 YGRLIQHFTDYRLPRQAKQLHARLIFHSVAPDNFLASKLINFYSK--SNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDS---RFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            Y R I      +   Q KQLH++ I   VAP+     KL  F+       +  A  +F KI    +  +N M+  +S  D   + +RL+ ++     + + PD+ T   +L    GL RD       K++H +V++ GL S+L++ N L+  YS C  +  AR +FD     D+ SWN MI+GY++   YEE   L  EM  + ++ P  VT++ VL AC +  D      VH
Sbjct:   34 YSRFISILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLK---EGVTPDSHTFPFLLN---GLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERN-LVSPTSVTLLLVLSACSKVKDKDLCKRVH 259          

HSP 3 Score: 74.7146 bits (182), Expect = 7.270e-13
Identity = 51/195 (26.15%), Postives = 94/195 (48.21%), Query Frame = 1
Query:  238 IFHSV-APDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQS 819
            IF S+ A D    + ++  Y +  +L  AR  FD++  +   S+  M+  Y     + ++L +F  + S+    + PD FT+  VL A   L       + + +Y+ +  + + + + N LI  Y +C     A+ +F  M  RD  +W +M+ G +  G  +E   +F +M +  + +PD +T + VL AC  S
Sbjct:  293 IFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSA---GMIPDEFTMVSVLTACAHL-GSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSI-QPDDITYLGVLSACNHS 482          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP231_ARATH (Pentatricopeptide repeat-containing protein At3g14730 OS=Arabidopsis thaliana GN=PCMP-E31 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.616e-20
Identity = 63/205 (30.73%), Postives = 102/205 (49.76%), Query Frame = 1
Query:  217 KQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGL----DSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQS 819
            + +H   +      D  +++ LI+ Y KS  L +A  +F+ +  + +F++N++L  +     +  TL LF  +  S    ++PD  T+T VL    G     R  +E+H Y++  GL     S+ F+ N L+  Y +C D+  AR +FD M  +D  SWN MI GY      E    +F  M  + V +PD +T V +L AC  S
Sbjct:  282 RSIHGLAVKTGSGSDIVVSNALIDMYGKSKWLEEANSIFEAMDERDLFTWNSVLCVHDYCGDHDGTLALFERMLCS---GIRPDIVTLTTVLPTC-GRLASLRQGREIHGYMIVSGLLNRKSSNEFIHNSLMDMYVKCGDLRDARMVFDSMRVKDSASWNIMINGYGVQSCGELALDMFSCMCRAGV-KPDEITFVGLLQACSHS 481          

HSP 2 Score: 95.9005 bits (237), Expect = 3.047e-19
Identity = 63/212 (29.72%), Postives = 107/212 (50.47%), Query Frame = 1
Query:  217 KQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKS-IFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            K++H          D ++ S L+  YSK  S+  A+ VFD++  +     +NA++  YS    + D L +FS +     + +     TIT VL A T +  D    + +H   ++ G  S + + N LI  Y +   +  A ++F+ M  RD+ +WNS++  +   G ++   ALF  ML S + RPD VT+ +VL  CG+ + +  G E+H
Sbjct:  180 KKVHGLAFKLGFDSDCYVGSGLVTSYSKFMSVEDAQKVFDELPDRDDSVLWNALVNGYSQIFRFEDALLVFSKMRE---EGVGVSRHTITSVLSAFT-VSGDIDNGRSIHGLAVKTGSGSDIVVSNALIDMYGKSKWLEEANSIFEAMDERDLFTWNSVLCVHDYCGDHDGTLALFERMLCSGI-RPDIVTLTTVLPTCGRLASLRQGREIH 386          

HSP 3 Score: 87.0409 bits (214), Expect = 1.416e-16
Identity = 62/218 (28.44%), Postives = 110/218 (50.46%), Query Frame = 1
Query:  217 KQLHARLIFHSVAPDNFLA-SKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNR-DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGV-----TVVSVLHACGQSSDIVFGMEVH 849
            +Q+H  ++      D+  A + L+N Y+K   + +A  VF   + + +F YNA++  + V+    D +  +  + ++    + PD +T   +LK    +  +    K+VH    + G DS  ++ +GL+T YS+   V  A+ +FD + +R D V WN+++ GYSQ   +E+   +F +M      R +GV     T+ SVL A   S DI  G  +H
Sbjct:   80 QQIHGFMVRKGFLDDSPRAGTSLVNMYAKCGLMRRAVLVFGG-SERDVFGYNALISGFVVNGSPLDAMETYREMRAN---GILPDKYTFPSLLKGSDAM--ELSDVKKVHGLAFKLGFDSDCYVGSGLVTSYSKFMSVEDAQKVFDELPDRDDSVLWNALVNGYSQIFRFEDALLVFSKM------REEGVGVSRHTITSVLSAFTVSGDIDNGRSIH 285          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP429_ARATH (Putative pentatricopeptide repeat-containing protein At5g52630 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.110e-20
Identity = 57/210 (27.14%), Postives = 111/210 (52.86%), Query Frame = 1
Query:  220 QLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            QLH  ++   ++    +A+ LINFYSKS     +R  F+    KS  ++++++  ++ +++   +L     + +    +L+PD+  +    K+   L R     + VH   ++ G D+ +F+ + L+  Y++C ++  AR +FD M  R++V+W+ M+ GY+Q G  EE   LF+E L    L  +  +  SV+  C  S+ +  G ++H
Sbjct:   36 QLHGYVVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSSTTWSSIISCFAQNELPWMSLEFLKKMMAG---NLRPDDHVLPSATKSCAILSRCD-IGRSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEALFEN-LAVNDYSFSSVISVCANSTLLELGRQIH 240          

HSP 2 Score: 80.4925 bits (197), Expect = 1.325e-14
Identity = 43/187 (22.99%), Postives = 100/187 (53.48%), Query Frame = 1
Query:  259 DNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQS 819
            D F+ S L++ Y+K   ++ AR +FD++  +++ +++ M+  Y+      + L LF     +  ++L  ++++ + V+             +++H   ++   DSS F+ + L++ YS+C     A  +F+ +  +++  WN+M+  Y+Q    ++   LF+ M  S  ++P+ +T ++VL+AC  +
Sbjct:  150 DVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKE---ALFENLAVNDYSFSSVISVCANSTL-LELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSG-MKPNFITFLNVLNACSHA 331          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP414_ARATH (Pentatricopeptide repeat-containing protein At5g42450, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E102 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.110e-20
Identity = 70/256 (27.34%), Postives = 120/256 (46.88%), Query Frame = 1
Query:  166 YGRLIQHFTDYRLPRQAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLF-----------SSLASSYSQDLK------------------PDNFTITCVLKALTGLFRDSRFAKEVHSYVLR-CGLDSSLFLVNGLITFYSRCDDVASARALFDGMSN--RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFG 837
            +G +I   T  R  +  KQLH   +   +A + F+ S ++N Y K ++L  AR  FD     ++ S   ++  Y     + + L LF           +++   +SQ  +                  P+  T  C + A++ +       K +H+  ++  G   ++F+ N LI+FYS+C ++  +   F+ +    R+IVSWNSMI GY+  G  EE  A+F +M+    LRP+ VT++ VL AC  +  I  G
Sbjct:   96 FGTVIGSSTTSRDVKLGKQLHCYALKMGLASNVFVGSAVLNCYVKLSTLTDARRCFDDTRDPNVVSITNLISGYLKKHEFEEALSLFRAMPERSVVTWNAVIGGFSQTGRNEEAVNTFVDMLREGVVIPNESTFPCAITAISNIASHGA-GKSIHACAIKFLGKRFNVFVWNSLISFYSKCGNMEDSLLAFNKLEEEQRNIVSWNSMIWGYAHNGRGEEAVAMFEKMVKDTNLRPNNVTILGVLFACNHAGLIQEG 350          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP329_ARATH (Pentatricopeptide repeat-containing protein At4g20770 OS=Arabidopsis thaliana GN=PCMP-E35 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 2.110e-20
Identity = 61/220 (27.73%), Postives = 107/220 (48.64%), Query Frame = 1
Query:  193 DYRLPRQAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNR-DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            +YR  +  + L  R+      P+      ++    +S  +   R +F  I   S+ ++NAML  YS ++ Y + +  F  +     Q+LKPD  T++ +L +   L R     K++H  V+R  +  +  +V+GLI  YS C+ +  +  +FD   N  DI  WNSMI+G+       +   LFR M  + VL P+  +  +VL +C +   ++ G + H
Sbjct:  328 EYRSDKSVEFL-TRMRDSGFQPNEVTCISVLGACFRSGDVETGRRIFSSIPQPSVSAWNAMLSGYSNYEHYEEAISNFRQMQF---QNLKPDKTTLSVILSSCARL-RFLEGGKQIHGVVIRTEISKNSHIVSGLIAVYSECEKMEISECIFDDCINELDIACWNSMISGFRHNMLDTKALILFRRMHQTAVLCPNETSFATVLSSCSRLCSLLHGRQFH 542          

HSP 2 Score: 97.0561 bits (240), Expect = 1.368e-19
Identity = 63/211 (29.86%), Postives = 107/211 (50.71%), Query Frame = 1
Query:  217 KQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDK-ITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEV 846
            KQ+H  +I   ++ ++ + S LI  YS+   +  +  +FD  I    I  +N+M+  +  + + T  L LF  +  +    L P+  +   VL + + L       ++ H  V++ G  S  F+   L   Y +C ++ SAR  FD +  ++ V WN MI GY   G  +E   L+R+M++S   +PDG+T VSVL AC  S  +  G+E+
Sbjct:  436 KQIHGVVIRTEISKNSHIVSGLIAVYSECEKMEISECIFDDCINELDIACWNSMISGFRHNMLDTKALILFRRMHQTAV--LCPNETSFATVLSSCSRLC-SLLHGRQFHGLVVKSGYVSDSFVETALTDMYCKCGEIDSARQFFDAVLRKNTVIWNEMIHGYGHNGRGDEAVGLYRKMISSGE-KPDGITFVSVLTACSHSGLVETGLEI 642          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP207_ARATH (Pentatricopeptide repeat-containing protein At3g02330 OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 2.110e-20
Identity = 68/214 (31.78%), Postives = 106/214 (49.53%), Query Frame = 1
Query:  208 RQAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            R   QLHA  +    A D  + +  ++ Y+K +++  A+ +FD   + +  SYNAM+  YS  +     L LF  L SS    L  D  +++ V +A   L +      +++   ++  L   + + N  I  Y +C  +A A  +FD M  RD VSWN++IA + Q G   E   LF  ML S +  PD  T  S+L AC   S + +GME+H
Sbjct:  298 RLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSS---GLGFDEISLSGVFRACA-LVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRI-EPDEFTFGSILKACTGGS-LGYGMEIH 505          

HSP 2 Score: 97.4413 bits (241), Expect = 1.047e-19
Identity = 60/228 (26.32%), Postives = 112/228 (49.12%), Query Frame = 1
Query:  220 QLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHV----------------FDKITSKSI----FSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGME 843
            ++H+ ++   +A ++ +   LI+ YSK   + +A  +                 +K+ +K +     S+N+++  Y + +   D   LF+ +       + PD FT   VL     L   +   K++H+ V++  L S +++ + L+  YS+C D+  +R +F+    RD V+WN+MI GY+  G  EE   LF  M+   + +P+ VT +S+L AC     I  G+E
Sbjct:  503 EIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMME---MGITPDKFTYATVLDTCANL-ASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENI-KPNHVTFISILRACAHMGLIDKGLE 725          

HSP 3 Score: 92.4337 bits (228), Expect = 3.369e-18
Identity = 65/230 (28.26%), Postives = 111/230 (48.26%), Query Frame = 1
Query:  220 QLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARAL----------------FDGMSNRDI----VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            Q++   I  S++ D  +A+  I+ Y K  +L +A  VFD++  +   S+NA++ A+  +    +TL LF S+  S    ++PD FT   +LKA TG      +  E+HS +++ G+ S+  +   LI  YS+C  +  A  +                 + M N+ +    VSWNS+I+GY      E+ + LF  M+   +  PD  T  +VL  C   +    G ++H
Sbjct:  403 QIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSR---IEPDEFTFGSILKACTG--GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGI-TPDKFTYATVLDTCANLASAGLGKQIH 626          

HSP 4 Score: 82.0333 bits (201), Expect = 4.554e-15
Identity = 60/241 (24.90%), Postives = 109/241 (45.23%), Query Frame = 1
Query:  217 KQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSV-HDMYTDT----------LRLFSSLASSYSQD-----------------LKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREM--LNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            KQ HA +I     P  F+ + L+  Y+ S   + A  VFDK+  + + S+N M+  YS  +DM+             +  ++S+ S Y Q+                 ++ D  T   +LK  + L  D+    ++H  V+R G D+ +   + L+  Y++      +  +F G+  ++ VSW+++IAG  Q          F+EM  +N+ V +       SVL +C   S++  G ++H
Sbjct:   68 KQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFL-EDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQS---IYASVLRSCAALSELRLGGQLH 304          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP311_ARATH (Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.756e-20
Identity = 66/207 (31.88%), Postives = 107/207 (51.69%), Query Frame = 1
Query:  229 ARLIFHSVAPDN-FLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEV 846
            AR  F  ++  N F+++ +++ YSK   L  A+ +FD+   K +  +  M+ AY   D   + LR+F  +  S    +KPD  ++  V+ A   L    + AK VHS +   GL+S L + N LI  Y++C  + + R +F+ M  R++VSW+SMI   S  G   +  +LF  M    V  P+ VT V VL+ C  S  +  G ++
Sbjct:  266 AREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCS---GIKPDVVSMFSVISACANLGILDK-AKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENV-EPNEVTFVGVLYGCSHSGLVEEGKKI 467          

HSP 2 Score: 73.9442 bits (180), Expect = 1.240e-12
Identity = 61/217 (28.11%), Postives = 104/217 (47.93%), Query Frame = 1
Query:  217 KQLHARLIFHSVAPDNFLASKLINFYSKSNS--LIQARHVFDKITSK-SIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALT---GLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            KQLHA ++   +  ++ L S L N    S+S  L  A +VF  I S      +N  L   S       T+  +  +        + D F+   +LKA++    LF       E+H    +       F+  G +  Y+ C  +  AR +FD MS+RD+V+WN+MI  Y + G  +E   LF EM +S V+ PD + + +++ ACG++ ++ +   ++
Sbjct:   29 KQLHAHILRTVI--NHKLNSFLFNLSVSSSSINLSYALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGG---RLDQFSFLPILKAVSKVSALFE----GMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVM-PDEMILCNIVSACGRTGNMRYNRAIY 235          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PPR75_ARATH (Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.600e-20
Identity = 62/211 (29.38%), Postives = 105/211 (49.76%), Query Frame = 1
Query:  220 QLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCG-LDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            Q HA ++   +  D F+ + LI+ YS S     A  +FD    K + ++ AM+  +  +   ++ +  F  +  +    +  +  T+  VLKA  G   D RF + VH   L  G +   +F+ + L+  Y +C     A+ +FD M +R++V+W ++IAGY Q   +++   +F EML S V  P+  T+ SVL AC     +  G  VH
Sbjct:  124 QFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKT---GVAANEMTVVSVLKA-AGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDV-APNEKTLSSVLSACAHVGALHRGRRVH 329          

HSP 2 Score: 80.1073 bits (196), Expect = 1.730e-14
Identity = 63/214 (29.44%), Postives = 104/214 (48.60%), Query Frame = 1
Query:  217 KQLHARLIFHSV---APDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            KQ+H  L+   +     D FL+  L    + +     AR +  ++ + SI  +++++  +S        L  F +        + P   T   +LKA+  L   + F  + H+++++ GLDS  F+ N LI+ YS       A  LFDG  ++D+V+W +MI G+ + G   E    F EM  + V   + +TVVSVL A G+  D+ FG  VH
Sbjct:   18 KQIHCLLLTSPIFYTRRDLFLSRLLRRCCTAATQFRYARRLLCQLQTLSIQLWDSLIGHFSGGITLNRRLS-FLAYRHMRRNGVIPSRHTFPPLLKAVFKLRDSNPF--QFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANE-MTVVSVLKAAGKVEDVRFGRSVH 227          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP441_ARATH (Pentatricopeptide repeat-containing protein At5g61800 OS=Arabidopsis thaliana GN=PCMP-E8 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.600e-20
Identity = 57/180 (31.67%), Postives = 98/180 (54.44%), Query Frame = 1
Query:  280 LINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQS 819
            LI+   K+  +++AR +FD +  + + S+N+++  Y+  +   + ++LF  + +     LKPDN  I   L A      D +  K +H Y  R  L    FL  GL+ FY++C  + +A  +F+  S++ + +WN+MI G +  G  E     FR+M++S + +PDGVT +SVL  C  S
Sbjct:  189 LIDGLVKAREIVRARELFDSMPLRDLVSWNSLISGYAQMNHCREAIKLFDEMVAL---GLKPDNVAIVSTLSACAQS-GDWQKGKAIHDYTKRKRLFIDSFLATGLVDFYAKCGFIDTAMEIFELCSDKTLFTWNAMITGLAMHGNGELTVDYFRKMVSSGI-KPDGVTFISVLVGCSHS 363          

HSP 2 Score: 89.7373 bits (221), Expect = 2.184e-17
Identity = 76/259 (29.34%), Postives = 114/259 (44.02%), Query Frame = 1
Query:  181 QHFTDYRLPRQAKQ--LHARLIFH--SVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFR-DSRFAKEVHSYVLRCGLDSSLFLVNGLITFYS-------------------------------RCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            Q  T  R+    KQ  + A ++F   S++P    + +++++         A  VF  IT+ S F +N ++   ++H+  + + + F        + + PD  T   V KA       D    K +H   LR GL S LF +N LI  YS                               +  ++  AR LFD M  RD+VSWNS+I+GY+Q     E   LF EM+ +  L+PD V +VS L AC QS D   G  +H
Sbjct:   26 QFITSGRISNDFKQNSVFANVLFAITSISPSASASKEVVSY---------ATSVFRFITNPSTFCFNTIIRICTLHEPSSLSSKRF--FVEMRRRSVPPDFHTFPFVFKACAAKKNGDLTLVKTLHCQALRFGLLSDLFTLNTLIRVYSLIAPIDSALQLFDENPQRDVVTYNVLIDGLVKAREIVRARELFDSMPLRDLVSWNSLISGYAQMNHCREAIKLFDEMV-ALGLKPDNVAIVSTLSACAQSGDWQKGKAIH 272          
The following BLAST results are available for this feature:
BLAST of FC918250 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
PP343_ARATH1.616e-2029.58Pentatricopeptide repeat-containing protein At4g31... [more]
PP235_ARATH1.616e-2027.31Putative pentatricopeptide repeat-containing prote... [more]
PP231_ARATH1.616e-2030.73Pentatricopeptide repeat-containing protein At3g14... [more]
PP429_ARATH2.110e-2027.14Putative pentatricopeptide repeat-containing prote... [more]
PP414_ARATH2.110e-2027.34Pentatricopeptide repeat-containing protein At5g42... [more]
PP329_ARATH2.110e-2027.73Pentatricopeptide repeat-containing protein At4g20... [more]
PP207_ARATH2.110e-2031.78Pentatricopeptide repeat-containing protein At3g02... [more]
PP311_ARATH2.756e-2031.88Pentatricopeptide repeat-containing protein At4g14... [more]
PPR75_ARATH3.600e-2029.38Pentatricopeptide repeat-containing protein At1g50... [more]
PP441_ARATH3.600e-2031.67Pentatricopeptide repeat-containing protein At5g61... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA96BA07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA96BA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918250 ID=FC918250; Name=FC918250; organism=Citrus clementina; type=EST; length=849bp
CTTATTGTTATAAGAAAGAAACACCAAGCAAATTAGTGAATTCGGTTTGG
CAGCCAGCAAACCAAATGAATGACGCACGCGAACTCACTATCGTTAAACA
TTCAAAATCTGCGCGCCAACAGTGGCCAAATTCAGCGAGCTCTTCAGACT
CTCGACTGTGGCGCTTACGGCCGACTCATCCAACATTTCACCGACTACCG
CCTTCCTCGCCAAGCCAAGCAACTCCACGCGCGCCTCATCTTCCATTCCG
TTGCACCCGACAACTTCCTCGCATCGAAACTCATCAATTTCTACTCGAAA
TCTAACAGTCTCATTCAAGCGCGACACGTGTTCGATAAAATTACAAGCAA
AAGCATCTTCTCATACAACGCCATGCTTATCGCGTACTCTGTTCACGACA
TGTATACTGATACGTTAAGGTTGTTTTCGTCTTTGGCGTCGTCTTATTCA
CAGGATTTGAAGCCTGATAACTTTACGATTACTTGTGTTTTGAAGGCATT
GACTGGTTTGTTCCGCGACTCGAGATTCGCTAAGGAGGTTCATTCCTATG
TTTTGCGATGTGGGCTTGATTCAAGTTTGTTTCTTGTTAATGGTTTGATA
ACATTTTATTCAAGATGCGATGATGTTGCTTCAGCGAGGGCGTTGTTTGA
TGGAATGTCGAATAGAGATATTGTGTCGTGGAATTCGATGATTGCTGGGT
ATTCCCAAGGAGGGTTTTACGAAGAGTGTAAAGCATTGTTTAGAGAGATG
TTAAACTCACCGGTATTGAGACCGGATGGGGTGACAGTCGTTAGTGTTTT
GCACGCGTGTGGGCAATCTAGTGATATAGTTTTCGGAATGGAAGTGCAT
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