FC918258

Overview
NameFC918258
Unique NameFC918258
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length910
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC918258 vs. ExPASy Swiss-Prot
Match: HFB2A_ARATH (Heat stress transcription factor B-2a OS=Arabidopsis thaliana GN=HSFB2A PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 5.410e-41
Identity = 96/242 (39.67%), Postives = 125/242 (51.65%), Query Frame = 1
Query:  133 SHKSVPAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRK-TAQPQVAINXXXXXXXXXXXXXXVLVNGPSFFPFPNRVSISPSDSDEHVNNWCDSPPRGGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQNHVKPVTPSNSYPP 855
            S +S+P PFLTKT+ LV+D + D V+SW ED ++F+VW P +FA+DLLP +FKHNNFSSFVRQLNTYGF+K+VPDRWEF+N+FFK+GEK LL EI RRK T   Q  +                    PS       + +SPS+S E  NN                                           L E+NE+LR  N  L  EL  M+ + ++I   + N+V       SY P
Sbjct:   16 SQRSIPTPFLTKTFNLVEDSSIDDVISWNEDGSSFIVWNPTDFAKDLLPKHFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDFFKRGEKRLLREIQRRKITTTHQTVV-------------------APSSEQRNQTMVVSPSNSGEDNNN----------------NQVMSSSPSSWYCHQTKTTGNGGLSVELLEENEKLRSQNIQLNRELTQMKSICDNIYSLMSNYVGSQPTDRSYSP 222          
BLAST of FC918258 vs. ExPASy Swiss-Prot
Match: HSFB1_ORYSJ (Heat stress transcription factor B-1 OS=Oryza sativa subsp. japonica GN=HSFB1 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.550e-38
Identity = 88/221 (39.82%), Postives = 119/221 (53.85%), Query Frame = 1
Query:  148 PAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPQVAINXXXXXXXXXXXXXXVLVNGPSFFPFPNRVSISPSDSDEHVNNWCDSPPRGGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSEDNERLRRSNNMLMSELAHMRKLYNDIIYFV 810
            PAPFLTKT Q+V++  TD V+SWG++  +FVVW+P EFARDLLP +FKH NFSSFVRQLNTYGFRK+VPDRWEFAN  F++GE+ LL  I RRK   PQ + +               +   P   P P   S + S  ++  ++   SPPR                                    ++ +NE+LR+ N  L  ELA  R+   +++ F+
Sbjct:   28 PAPFLTKTNQMVEESATDEVISWGKEGRSFVVWKPVEFARDLLPLHFKHCNFSSFVRQLNTYGFRKVVPDRWEFANGNFRRGEQGLLSGIRRRKATTPQSSKSCGSGVN---------VAFPPPLPPLPPEPSATTSSGNDRSSSSASSPPRA----------------------------------DITSENEQLRKDNQTLTMELARARRHCEELLGFL 205          
BLAST of FC918258 vs. ExPASy Swiss-Prot
Match: HFA1A_ARATH (Heat stress transcription factor A-1a OS=Arabidopsis thaliana GN=HSFA1A PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 9.550e-38
Identity = 69/99 (69.70%), Postives = 83/99 (83.84%), Query Frame = 1
Query:  142 SVPAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQ 438
            S+P PFL+KTY +V+DP TD +VSW   + +F+VW PPEF+RDLLP YFKHNNFSSFVRQLNTYGFRK+ PDRWEFANE F +G+KHLL +I RRK+ Q
Sbjct:   48 SLPPPFLSKTYDMVEDPATDAIVSWSPTNNSFIVWDPPEFSRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKKISRRKSVQ 146          
BLAST of FC918258 vs. ExPASy Swiss-Prot
Match: HSF8_SOLPE (Heat shock factor protein HSF8 OS=Solanum peruvianum GN=HSF8 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.629e-37
Identity = 70/98 (71.43%), Postives = 80/98 (81.63%), Query Frame = 1
Query:  142 SVPAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTA 435
            + P PFL KTY +VDDP+TD +VSW   + +FVVW PPEFA+DLLP YFKHNNFSSFVRQLNTYGFRK+ PDRWEFANE F +G+KHLL  I RRK A
Sbjct:   37 NAPPPFLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSISRRKPA 134          
BLAST of FC918258 vs. ExPASy Swiss-Prot
Match: HSF8_SOLLC (Heat shock factor protein HSF8 OS=Solanum lycopersicum GN=HSF8 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.629e-37
Identity = 70/98 (71.43%), Postives = 80/98 (81.63%), Query Frame = 1
Query:  142 SVPAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTA 435
            + P PFL KTY +VDDP+TD +VSW   + +FVVW PPEFA+DLLP YFKHNNFSSFVRQLNTYGFRK+ PDRWEFANE F +G+KHLL  I RRK A
Sbjct:   35 NAPPPFLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSISRRKPA 132          
BLAST of FC918258 vs. ExPASy Swiss-Prot
Match: HSFA1_ORYSJ (Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.740e-37
Identity = 70/96 (72.92%), Postives = 80/96 (83.33%), Query Frame = 1
Query:  142 SVPAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRK 429
            + P PFL KTY++VDDP TD VVSWG  + +FVVW  PEFARDLLP YFKH+NFSSFVRQLNTYGFRK+ PDRWEFANE F +G+KHLL  I+RRK
Sbjct:   33 TAPPPFLMKTYEMVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTINRRK 128          
BLAST of FC918258 vs. ExPASy Swiss-Prot
Match: HFA1D_ARATH (Heat stress transcription factor A-1d OS=Arabidopsis thaliana GN=HSFA1D PE=2 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 1.379e-36
Identity = 69/101 (68.32%), Postives = 81/101 (80.20%), Query Frame = 1
Query:  142 SVPAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPQ 444
            + P PFL+KTY +VDD  TD +VSW  ++ +F+VW+PPEFARDLLP  FKHNNFSSFVRQLNTYGFRK+ PDRWEFANE F +G+KHLL  I RRK A  Q
Sbjct:   33 NAPPPFLSKTYDMVDDHNTDSIVSWSANNNSFIVWKPPEFARDLLPKNFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLQSITRRKPAHGQ 133          
BLAST of FC918258 vs. ExPASy Swiss-Prot
Match: HFB2A_ORYSJ (Heat stress transcription factor B-2a OS=Oryza sativa subsp. japonica GN=HSFB2A PE=2 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 4.012e-36
Identity = 92/226 (40.71%), Postives = 112/226 (49.56%), Query Frame = 1
Query:  154 PFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPQVAINXXXXXXXXXXXXXXVLVNGPSFFP---FPNRVSI-SPSDSDEHVNNWCDSPPRGGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQNH 819
            PFLTKTY +V+DP+TD  +SW +  T FVVWRP EFARDLLP +FKH+NFSSFVRQLNTYGF+K+V DRWEFAN+ F++GEKHLL  I RRK +                         G    P    P  + I SP  S         SPPRG                                   L E+N RLRR N  L  ELA  R++ + +   V  +
Sbjct:   10 PFLTKTYAMVEDPSTDETISWNDSGTAFVVWRPAEFARDLLPKHFKHSNFSSFVRQLNTYGFKKVVADRWEFANDCFRRGEKHLLGGIQRRKGSG----------------------TGGAGAAPAGGIPTAIPISSPPTSSGGEPAVSSSPPRGA---------------------AGIAAGVSGAVAELEEENARLRRENARLARELARARRVCDGVRRLVSRY 192          
BLAST of FC918258 vs. ExPASy Swiss-Prot
Match: HSFA5_ORYSJ (Heat stress transcription factor A-5 OS=Oryza sativa subsp. japonica GN=HSFA5 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 5.240e-36
Identity = 70/95 (73.68%), Postives = 80/95 (84.21%), Query Frame = 1
Query:  148 PAPFLTKTYQLVDDPTTDHVVSWGE-DDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRK 429
            PAPFL KTY++VDDP+TD VVSW +  D +FVVW  PEFA  LLP YFKH+NFSSF+RQLNTYGFRKI P+RWEFANE+F KG+KHLL  IHRRK
Sbjct:   19 PAPFLLKTYEMVDDPSTDAVVSWSDASDASFVVWNHPEFAARLLPAYFKHSNFSSFIRQLNTYGFRKIDPERWEFANEYFIKGQKHLLKNIHRRK 113          
BLAST of FC918258 vs. ExPASy Swiss-Prot
Match: HFA6B_ARATH (Heat stress transcription factor A-6b OS=Arabidopsis thaliana GN=HSFA6b PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.397e-35
Identity = 67/100 (67.00%), Postives = 80/100 (80.00%), Query Frame = 1
Query:  136 HKSVPAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTA 435
            H+S P PFLTKTY LV+D  T+HVVSW + + +F+VW P  F+  LLP +FKHNNFSSFVRQLNTYGFRK+ PDRWEFANE F +G+KHLL  I RRKT+
Sbjct:   55 HESGPPPFLTKTYDLVEDSRTNHVVSWSKSNNSFIVWDPQAFSVTLLPRFFKHNNFSSFVRQLNTYGFRKVNPDRWEFANEGFLRGQKHLLKNIRRRKTS 154          
The following BLAST results are available for this feature:
BLAST of FC918258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
HFB2A_ARATH5.410e-4139.67Heat stress transcription factor B-2a OS=Arabidops... [more]
HSFB1_ORYSJ9.550e-3839.82Heat stress transcription factor B-1 OS=Oryza sati... [more]
HFA1A_ARATH9.550e-3869.70Heat stress transcription factor A-1a OS=Arabidops... [more]
HSF8_SOLPE1.629e-3771.43Heat shock factor protein HSF8 OS=Solanum peruvian... [more]
HSF8_SOLLC1.629e-3771.43Heat shock factor protein HSF8 OS=Solanum lycopers... [more]
HSFA1_ORYSJ4.740e-3772.92Heat stress transcription factor A-1 OS=Oryza sati... [more]
HFA1D_ARATH1.379e-3668.32Heat stress transcription factor A-1d OS=Arabidops... [more]
HFB2A_ORYSJ4.012e-3640.71Heat stress transcription factor B-2a OS=Oryza sat... [more]
HSFA5_ORYSJ5.240e-3673.68Heat stress transcription factor A-5 OS=Oryza sati... [more]
HFA6B_ARATH3.397e-3567.00Heat stress transcription factor A-6b OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA74DD11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA74DD11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918258 ID=FC918258; Name=FC918258; organism=Citrus clementina; type=EST; length=910bp
CCCCCCTCTCCCGACTCTCTCTCACTTGCTCCCAAACAAAAAAATTTTTC
TTGTTGCTTTGTTTTTGCTTTCACCCTTCTTTCAATGGCGCTTATGTTAG
ACAATTGCGAAGGCATCTTGCTATCACTAGACTCACACAAATCAGTACCG
GCGCCATTCCTCACAAAAACTTACCAGCTGGTTGATGATCCCACCACAGA
CCATGTAGTTTCCTGGGGCGAAGACGACACCACCTTCGTCGTTTGGCGTC
CCCCTGAGTTCGCACGTGATCTTCTTCCCAACTACTTCAAGCACAACAAC
TTTTCTAGTTTTGTCAGACAGCTCAACACCTATGGTTTTAGAAAGATTGT
GCCGGACAGATGGGAGTTTGCTAATGAGTTCTTCAAGAAAGGAGAGAAGC
ACTTGCTGTGTGAGATCCACAGAAGAAAGACTGCACAGCCACAAGTTGCC
ATAAACCATCATCACCATCATCATCAGCACCCACATTCGCATTCTCCCGT
ACTGGTCAACGGTCCAAGTTTCTTCCCATTTCCGAACCGAGTCAGCATCT
CTCCATCCGACTCAGACGAACACGTTAACAACTGGTGTGACTCGCCGCCA
AGAGGAGGCAAAGGCACGGGAGTTTCTGCTGTCATGAGTAGTGGTGCTGG
CTGCGGCGGCGGGTACAACAATAACAATAATAATATTAATCTTAATACCT
CGGTTACTGCCTTGTCGGAAGATAATGAGAGACTGAGGAGAAGCAACAAT
ATGCTTATGTCGGAACTTGCACACATGAGAAAGCTTTACAATGATATCAT
ATATTTTGTGCAAAATCATGTGAAGCCAGTTACTCCTAGCAATTCTTACC
CCCCTTCTTTGCTTCTTTGTAACACAACACCAAGTGCTGCTGCTGCTGCT
CCTATGTGTG
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