FC918258

Overview
NameFC918258
Unique NameFC918258
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length910
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC918258 vs. ExPASy Swiss-Prot
Match: HSF30_SOLPE (Heat shock factor protein HSF30 OS=Solanum peruvianum GN=HSF30 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.329e-30
Identity = 58/98 (59.18%), Postives = 74/98 (75.51%), Query Frame = 1
Query:  136 HKSVPAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRK 429
            H   P PFL+KTY++V+D +TD V+SW     +F+VW   +F+  LLP +FKH+NFSSF+RQLNTYGFRK+ PDRWEFANE F  G+KHLL  I RR+
Sbjct:   25 HDVGPPPFLSKTYEMVEDSSTDQVISWSTTRNSFIVWDSHKFSTTLLPRFFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRR 122          
BLAST of FC918258 vs. ExPASy Swiss-Prot
Match: HFA7B_ARATH (Heat stress transcription factor A-7b OS=Arabidopsis thaliana GN=HSFA7B PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.329e-30
Identity = 59/103 (57.28%), Postives = 75/103 (72.82%), Query Frame = 1
Query:  148 PAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPQVAIN 456
            P+PFLTKT+++V DP T+H+VSW     +FVVW P  F+  +LP YFKHNNFSSFVRQLNTYGFRKI  +RWEF NE F  G++ LL  I RR ++    ++N
Sbjct:   26 PSPFLTKTFEMVGDPNTNHIVSWNRGGISFVVWDPHSFSATILPLYFKHNNFSSFVRQLNTYGFRKIEAERWEFMNEGFLMGQRDLLKSIKRRTSSSSPPSLN 128          
BLAST of FC918258 vs. ExPASy Swiss-Prot
Match: HFC1A_ORYSJ (Heat stress transcription factor C-1a OS=Oryza sativa subsp. japonica GN=HSFC1A PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 1.058e-28
Identity = 60/93 (64.52%), Postives = 72/93 (77.42%), Query Frame = 1
Query:  151 APFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRK 429
            APF+ KTYQ+V DP TD +V WG D+ +FVV  P  F++ LLP +FKH NFSSFVRQLNTYGFRK+ PDRWEFA+E F +G+ HLL  I RRK
Sbjct:   25 APFVAKTYQMVCDPRTDALVRWGRDNNSFVVVDPAAFSQLLLPCFFKHGNFSSFVRQLNTYGFRKVHPDRWEFAHESFLRGQTHLLPRIVRRK 117          
BLAST of FC918258 vs. ExPASy Swiss-Prot
Match: HFC2A_ORYSJ (Heat stress transcription factor C-2a OS=Oryza sativa subsp. japonica GN=HSFC2A PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.382e-28
Identity = 58/94 (61.70%), Postives = 73/94 (77.66%), Query Frame = 1
Query:  151 APFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKT 432
            APF+ KTY++VDDP TD V++WG D  +FVV  P  F++ LLP +FKH+NFSSFVRQLNTYGFRK+ PDRWEFA+  F +G+ HLL  I RR +
Sbjct:   13 APFVAKTYRMVDDPATDGVIAWGRDSNSFVVADPFAFSQTLLPAHFKHSNFSSFVRQLNTYGFRKVDPDRWEFAHVSFLRGQTHLLRRIVRRSS 106          
BLAST of FC918258 vs. ExPASy Swiss-Prot
Match: HFA6A_ORYSJ (Putative heat stress transcription factor A-6a OS=Oryza sativa subsp. japonica GN=HSFA6A PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.079e-28
Identity = 60/94 (63.83%), Postives = 71/94 (75.53%), Query Frame = 1
Query:  151 APFLTKTYQLVDDPTTDHVVSWG-EDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRK 429
            APFL KT+++V+DP TD VVSWG     +FVVW P  FA  LLP +FKH NFSSF+RQLNTYGFRK+  DRWEFANE F  G++HLL  I RR+
Sbjct:   42 APFLVKTFEMVEDPATDAVVSWGGAARNSFVVWDPHAFAAGLLPLHFKHANFSSFLRQLNTYGFRKVSADRWEFANEDFLGGQRHLLANIRRRR 135          
BLAST of FC918258 vs. ExPASy Swiss-Prot
Match: HSFA9_ORYSJ (Heat stress transcription factor A-9 OS=Oryza sativa subsp. japonica GN=HSFA9 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.860e-28
Identity = 58/98 (59.18%), Postives = 72/98 (73.47%), Query Frame = 1
Query:  151 APFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPQ 444
            APFLTK Y +V DP TD+V+SW E   +FV+W    F RDL   +FKH+NF+SF+RQLNTYGFRK+ PDRWE+ANE F  G+KHLL  I RRK +  +
Sbjct:   49 APFLTKVYDMVSDPATDNVISWAEGGGSFVIWDSHAFERDL-HRHFKHSNFTSFIRQLNTYGFRKVHPDRWEWANEGFIMGQKHLLKTIKRRKKSSQE 145          
BLAST of FC918258 vs. ExPASy Swiss-Prot
Match: HFC2B_ORYSJ (Heat stress transcription factor C-2b OS=Oryza sativa subsp. japonica GN=HSFC2B PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.959e-28
Identity = 58/95 (61.05%), Postives = 74/95 (77.89%), Query Frame = 1
Query:  151 APFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTA 435
            APF+ KTY++V+DP TD V+ WG+ + +FVV  P  F++ LLP +FKHNNFSSFVRQLNTYGFRK+ PDRWEFA+  F +G+ HLL  I RR +A
Sbjct:   10 APFVWKTYRMVEDPGTDGVIGWGKGNNSFVVADPFVFSQTLLPAHFKHNNFSSFVRQLNTYGFRKVDPDRWEFAHASFLRGQTHLLRNIVRRGSA 104          
BLAST of FC918258 vs. ExPASy Swiss-Prot
Match: HSFA9_ARATH (Heat stress transcription factor A-9 OS=Arabidopsis thaliana GN=HSFA9 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.170e-27
Identity = 55/91 (60.44%), Postives = 69/91 (75.82%), Query Frame = 1
Query:  154 PFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRR 426
            PFL KT+++VDD  TD VVSW     +F++W   EF+ +LLP YFKH NFSSF+RQLN+YGF+K+  DRWEFANE F+ G+KHLL  I RR
Sbjct:   71 PFLRKTFEIVDDKVTDPVVSWSPTRKSFIIWDSYEFSENLLPKYFKHKNFSSFIRQLNSYGFKKVDSDRWEFANEGFQGGKKHLLKNIKRR 161          
BLAST of FC918258 vs. ExPASy Swiss-Prot
Match: HFC1B_ORYSJ (Heat stress transcription factor C-1b OS=Oryza sativa subsp. japonica GN=HSFC1B PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.916e-26
Identity = 56/100 (56.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query:  130 DSHKSVPAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRK 429
            D      APF+ KT+ +V DP+T+ VV WG    TF+V  P  F+  LLP+YFKH NF+SFVRQLNTYGFRK+ PDRWEFA+E F +G+  LL  I R+K
Sbjct:   16 DGGPGAVAPFVAKTFHMVSDPSTNAVVRWGGAGNTFLVLDPAAFSDFLLPSYFKHRNFASFVRQLNTYGFRKVDPDRWEFAHESFLRGQAQLLPRIVRKK 115          
BLAST of FC918258 vs. ExPASy Swiss-Prot
Match: HSFA8_ARATH (Heat stress transcription factor A-8 OS=Arabidopsis thaliana GN=HSFA8 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.095e-25
Identity = 57/103 (55.34%), Postives = 70/103 (67.96%), Query Frame = 1
Query:  133 SHKSVPAPFLTKTYQLVDDPTTDHVVSWGED-DTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQ 438
            S  S  APFL K Y +VDD TTD ++SW    D +FV+     F+  LLP YFKH+NFSSF+RQLN YGFRK+  DRWEFAN+ F +G+K LL  + RRK  Q
Sbjct:   12 SSSSSVAPFLRKCYDMVDDSTTDSIISWSPSADNSFVILDTTVFSVQLLPKYFKHSNFSSFIRQLNIYGFRKVDADRWEFANDGFVRGQKDLLKNVIRRKNVQ 114          
The following BLAST results are available for this feature:
BLAST of FC918258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
HSF30_SOLPE7.329e-3059.18Heat shock factor protein HSF30 OS=Solanum peruvia... [more]
HFA7B_ARATH7.329e-3057.28Heat stress transcription factor A-7b OS=Arabidops... [more]
HFC1A_ORYSJ1.058e-2864.52Heat stress transcription factor C-1a OS=Oryza sat... [more]
HFC2A_ORYSJ1.382e-2861.70Heat stress transcription factor C-2a OS=Oryza sat... [more]
HFA6A_ORYSJ3.079e-2863.83Putative heat stress transcription factor A-6a OS=... [more]
HSFA9_ORYSJ6.860e-2859.18Heat stress transcription factor A-9 OS=Oryza sati... [more]
HFC2B_ORYSJ8.959e-2861.05Heat stress transcription factor C-2b OS=Oryza sat... [more]
HSFA9_ARATH1.170e-2760.44Heat stress transcription factor A-9 OS=Arabidopsi... [more]
HFC1B_ORYSJ4.916e-2656.00Heat stress transcription factor C-1b OS=Oryza sat... [more]
HSFA8_ARATH1.095e-2555.34Heat stress transcription factor A-8 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA74DD11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA74DD11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918258 ID=FC918258; Name=FC918258; organism=Citrus clementina; type=EST; length=910bp
CCCCCCTCTCCCGACTCTCTCTCACTTGCTCCCAAACAAAAAAATTTTTC
TTGTTGCTTTGTTTTTGCTTTCACCCTTCTTTCAATGGCGCTTATGTTAG
ACAATTGCGAAGGCATCTTGCTATCACTAGACTCACACAAATCAGTACCG
GCGCCATTCCTCACAAAAACTTACCAGCTGGTTGATGATCCCACCACAGA
CCATGTAGTTTCCTGGGGCGAAGACGACACCACCTTCGTCGTTTGGCGTC
CCCCTGAGTTCGCACGTGATCTTCTTCCCAACTACTTCAAGCACAACAAC
TTTTCTAGTTTTGTCAGACAGCTCAACACCTATGGTTTTAGAAAGATTGT
GCCGGACAGATGGGAGTTTGCTAATGAGTTCTTCAAGAAAGGAGAGAAGC
ACTTGCTGTGTGAGATCCACAGAAGAAAGACTGCACAGCCACAAGTTGCC
ATAAACCATCATCACCATCATCATCAGCACCCACATTCGCATTCTCCCGT
ACTGGTCAACGGTCCAAGTTTCTTCCCATTTCCGAACCGAGTCAGCATCT
CTCCATCCGACTCAGACGAACACGTTAACAACTGGTGTGACTCGCCGCCA
AGAGGAGGCAAAGGCACGGGAGTTTCTGCTGTCATGAGTAGTGGTGCTGG
CTGCGGCGGCGGGTACAACAATAACAATAATAATATTAATCTTAATACCT
CGGTTACTGCCTTGTCGGAAGATAATGAGAGACTGAGGAGAAGCAACAAT
ATGCTTATGTCGGAACTTGCACACATGAGAAAGCTTTACAATGATATCAT
ATATTTTGTGCAAAATCATGTGAAGCCAGTTACTCCTAGCAATTCTTACC
CCCCTTCTTTGCTTCTTTGTAACACAACACCAAGTGCTGCTGCTGCTGCT
CCTATGTGTG
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