FC918259

Overview
NameFC918259
Unique NameFC918259
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3942 contig Ccv1_Contig3942:1..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC918259 vs. ExPASy Swiss-Prot
Match: CISY_CHICK (Citrate synthase, mitochondrial OS=Gallus gallus GN=CS PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.087e-56
Identity = 65/111 (58.56%), Postives = 81/111 (72.97%), Query Frame = 3
Query:   99 AHAQSLKDRMAELIPKEIENVKAVRAAHGNKSFGEMTVDQAYGGMRGIKGLIWEGSVLDADQGIRFRGKTIPECQADLPTAPGGTEPLPEALFWLLLTGEVPTAEQVKGLS 431
            A + +LKD +A LIPKE   +K  R  HG  + G++TVD +YGGMRG+KGL++E SVLD D+GIRFRG +IPECQ  LP    G EPLPE LFWLL+TG++PT  QV  LS
Sbjct:    1 ASSTNLKDVLAALIPKEQARIKTFRQQHGGTALGQITVDMSYGGMRGMKGLVYETSVLDPDEGIRFRGFSIPECQKLLPKGGXGGEPLPEGLFWLLVTGQIPTGAQVSWLS 111          

HSP 2 Score: 103.99 bits (258), Expect = 5.087e-56
Identity = 44/86 (51.16%), Postives = 65/86 (75.58%), Query Frame = 1
Query:  433 QEWAARAEIPQFVKELIDRCPNTLHPMSQFSLAVTALNHDSSFAKAYSDGVHKKEYWKTTFDDSMDLIAKLPNIAGRIFRNVYRDG 690
            +EWA RA +P  V  ++D  P  LHPMSQ S A+TALN +S+FA+AY++G+ + +YW+  ++ +MDLIAKLP +A +I+RN+YR G
Sbjct:  112 KEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGILRTKYWEMVYESAMDLIAKLPCVAAKIYRNLYRAG 197          
BLAST of FC918259 vs. ExPASy Swiss-Prot
Match: CISY_CITMA (Citrate synthase, mitochondrial OS=Citrus maxima GN=CIT PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 8.915e-46
Identity = 58/106 (54.72%), Postives = 75/106 (70.75%), Query Frame = 3
Query:  114 LKDRMAELIPKEIENVKAVRAAHGNKSFGEMTVDQAYGGMRGIKGLIWEGSVLDADQGIRFRGKTIPECQADLPTAPGGTEPLPEALFWLLLTGEVPTAEQVKGLS 431
            L  ++ E+IP++ E +K V++  G    G +T+D   GGMRG+ GL+WE S+LD D+GIRFRG +IPECQ  LP A    EPLPE L WLLLTG+VP+ EQV GLS
Sbjct:   40 LHSQLKEMIPEQQERLKKVKSDLGKAQLGNITIDVVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLS 145          

HSP 2 Score: 83.9593 bits (206), Expect = 8.915e-46
Identity = 36/88 (40.91%), Postives = 59/88 (67.05%), Query Frame = 1
Query:  433 QEWAARAEIPQFVKELIDRCPNTLHPMSQFSLAVTALNHDSSFAKAYSDGVHKKEYWKTTFDDSMDLIAKLPNIAGRIFRNVYRDGKM 696
            +E   RA +P +V + ID  P + HPM+QF+  V AL   S F +AY  G+HK + W+ T +DS++LIA++P +A  +++ +Y+DGK+
Sbjct:  146 KELRDRATVPDYVYKAIDALPVSAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKSWEPTSEDSLNLIARVPVVAAYVYQRIYKDGKI 233          
BLAST of FC918259 vs. ExPASy Swiss-Prot
Match: CISY_SOLTU (Citrate synthase, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 5.556e-42
Identity = 61/141 (43.26%), Postives = 87/141 (61.70%), Query Frame = 3
Query:   18 MSFLATRSALRTSVRPSFARTFASTPSAHAQSLKDRMAELIPKEIENVKAVRAAHGNKSFGEMTVDQAYGGMRGIKGLIWEGSVLDADQGIRFRGKTIPECQADLPTAPGGTEPLPEALFWLLLTGEVPTAEQVKGLSPGM 440
            +S L +R+  +++V  S  R      S+      + + ELIP++ + +K +++     S G +TVD   GGMRG+ GL+W+   LD D+GIRFRG +IPECQ  LP A  G EPLPE L WLLLTG+VP+ EQV  +  G+
Sbjct:   10 LSKLRSRAVQQSNVSNS-VRWLQVQTSSGLDLRSELVQELIPEQQDRLKKIKSDMKG-SIGNITVDMVLGGMRGMTGLLWKPHYLDPDEGIRFRGLSIPECQKVLPAAKPGGEPLPEGLLWLLLTGKVPSKEQVNSIVSGI 148          

HSP 2 Score: 80.8777 bits (198), Expect = 5.556e-42
Identity = 34/70 (48.57%), Postives = 50/70 (71.43%), Query Frame = 1
Query:  481 IDRCPNTLHPMSQFSLAVTALNHDSSFAKAYSDGVHKKEYWKTTFDDSMDLIAKLPNIAGRIFRNVYRDG 690
            ID  P T HPM+QF+  V AL   S F KAY  G+HK +YW+ T++DSM+LIA++P +A  ++R +Y++G
Sbjct:  163 IDALPVTAHPMTQFATGVMALQVQSEFQKAYEKGIHKSKYWEPTYEDSMNLIAQVPLVAAYVYRRMYKNG 232          
BLAST of FC918259 vs. ExPASy Swiss-Prot
Match: CISY_FRAAN (Citrate synthase, mitochondrial OS=Fragaria ananassa GN=MCSI PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.616e-41
Identity = 64/134 (47.76%), Postives = 84/134 (62.69%), Query Frame = 3
Query:   18 MSFLATRSALRTSV-RPSFARTFASTPSAHAQS---LKDRMAELIPKEIENVKAVRAAHGNKSFGEMTVDQAYGGMRGIKGLIWEGSVLDADQGIRFRGKTIPECQADLPTAPGGTEPLPEALFWLLLTGEVPT 407
            M+F  T + LR+ + +P   R         A S   L  ++ ELIP++ E +K ++  HG    G +TVD   GGMRG+ GL+WE S+LD D+GIRFRG +IPECQ  LP A  G EPLPE L WLLLTG+VP+
Sbjct:    1 MAFFRTVTKLRSRLGQPPSLRDSVRCLQTQASSDLDLHSQLKELIPEQQERLKKLKKEHGKVQLGTITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKVLPGATPGGEPLPEGLLWLLLTGKVPS 134          

HSP 2 Score: 69.707 bits (169), Expect = 4.616e-41
Identity = 29/63 (46.03%), Postives = 43/63 (68.25%), Query Frame = 1
Query:  508 PMSQFSLAVTALNHDSSFAKAYSDGVHKKEYWKTTFDDSMDLIAKLPNIAGRIFRNVYRDGKM 696
            PM+QF+  V AL   S F KAY  G+ K  YW+ T++DS+ LIA+LP +A  ++R +Y+ G+M
Sbjct:  168 PMTQFTTGVMALQVQSEFQKAYDKGIPKSRYWEPTYEDSLSLIAQLPVVASYVYRRIYKGGRM 230          
BLAST of FC918259 vs. ExPASy Swiss-Prot
Match: CISY_NEUCR (Citrate synthase, mitochondrial OS=Neurospora crassa GN=cit-1 PE=2 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 3.952e-40
Identity = 84/144 (58.33%), Postives = 105/144 (72.92%), Query Frame = 3
Query:   30 ATRSALRTSVRPSFARTFASTPSAHAQSLKDRMAELIPKEIENVKAVRAAHGNKSFGEMTVDQAYGGMRGIKGLIWEGSVLDADQGIRFRGKTIPECQADLPTAPGGTEPLPEALFWLLLTGEVPTAEQVKGLSPGMGCSSRDP 461
            A RS++  + R + A T A   S+  Q+LK+R AEL+P+ IE +KA+R  HG+K   ++T+DQ YGG RGIK L+WEGSVLDA++GIRFRGKTIPECQ  LP APGG EPLPE LFWLLLTGEVP+ +QV+ LS      S  P
Sbjct:   11 ALRSSIHLTSRQT-AFTAARCYSSKTQTLKERFAELLPENIEKIKALRKEHGSKVVDKVTLDQVYGGARGIKCLVWEGSVLDAEEGIRFRGKTIPECQELLPKAPGGKEPLPEGLFWLLLTGEVPSEQQVRDLSAEWAARSDVP 153          

HSP 2 Score: 137.502 bits (345), Expect = 6.757e-32
Identity = 61/92 (66.30%), Postives = 79/92 (85.87%), Query Frame = 1
Query:  421 RDCLQEWAARAEIPQFVKELIDRCPNTLHPMSQFSLAVTALNHDSSFAKAYSDGVHKKEYWKTTFDDSMDLIAKLPNIAGRIFRNVYRDGKM 696
            RD   EWAAR+++P+F++ELIDRCP+ LHPM+Q SLAVTAL H SSFA+AY+ G++KKEYW  TF+DSMDLIAKLP IA RI++NV++ GK+
Sbjct:  140 RDLSAEWAARSDVPKFIEELIDRCPSDLHPMAQLSLAVTALEHTSSFARAYAKGINKKEYWGYTFEDSMDLIAKLPTIAARIYQNVFKGGKV 231          
BLAST of FC918259 vs. ExPASy Swiss-Prot
Match: CISY_LEIMA (Probable citrate synthase, mitochondrial OS=Leishmania major GN=LmjF18.0680 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 5.403e-39
Identity = 64/128 (50.00%), Postives = 86/128 (67.19%), Query Frame = 3
Query:   54 SVRPSFARTFASTPSAHA--QSLKDRMAELIPKEIENVKAVRAAHGNKSFGEMTVDQAYGGMRGIKGLIWEGSVLDADQGIRFRGKTIPECQADLPTAPGGTEPLPEALFWLLLTGEVPTAEQVKGLS 431
            +VR S  R  A    A +    +K++M     ++ + +  +R  HG++   + T+D  YGGMRGI GL++E S+LD  +GIRFRG TI ECQ  LP APGG EPLPEA+FWLL+TGEVPT EQV+GL+
Sbjct:    3 AVRCSLIRGVAGLRMASSALDEMKEQMLRRWKEDQKKIDDLRKKHGHEKLCDATIDAVYGGMRGITGLVYEPSLLDPAEGIRFRGLTILECQEMLPKAPGGKEPLPEAMFWLLMTGEVPTEEQVRGLN 130          

HSP 2 Score: 56.9954 bits (136), Expect = 5.403e-39
Identity = 27/67 (40.30%), Postives = 41/67 (61.19%), Query Frame = 1
Query:  472 KELIDRCPNTLHPMSQFSLAVTALNHDSSFAKAYSDG-VHKKEYWKTTFDDSMDLIAKLPNIAGRIF 669
            ++ I   P   HPM+ FS+ V AL   S FA AY+ G  +KK YW+   +DS+D++A+ P +A  I+
Sbjct:  146 QKAIAALPRNAHPMTAFSVGVLALQSYSKFAAAYAAGKSNKKTYWEYALEDSLDMLARTPTVAAMIY 212          
BLAST of FC918259 vs. ExPASy Swiss-Prot
Match: CISY1_YEAST (Citrate synthase, mitochondrial OS=Saccharomyces cerevisiae GN=CIT1 PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.271e-38
Identity = 81/139 (58.27%), Postives = 100/139 (71.94%), Query Frame = 3
Query:   96 SAHAQSLKDRMAELIPKEIENVKAVRAAHGNKSFGEMTVDQAYGGMRGIKGLIWEGSVLDADQGIRFRGKTIPECQADLPTAPGGTEPLPEALFWLLLTGEVPTAEQVKGLSPGMGCSSRDPT-VCQGID*SMPQHSPP 509
            SA  Q+LK+R AE+IP + E +K  +  HG    GE+ ++QAYGGMRGIKGL+WEGSVLD ++GIRFRG+TIPE Q +LP A G TEPLPEALFWLLLTGE+PT  QVK LS  +   S  P  V Q +D S+P+   P
Sbjct:   39 SASEQTLKERFAEIIPAKAEEIKKFKKEHGKTVIGEVLLEQAYGGMRGIKGLVWEGSVLDPEEGIRFRGRTIPEIQRELPKAEGSTEPLPEALFWLLLTGEIPTDAQVKALSADLAARSEIPEHVIQLLD-SLPKDLHP 176          

HSP 2 Score: 116.316 bits (290), Expect = 1.612e-25
Identity = 53/85 (62.35%), Postives = 69/85 (81.18%), Query Frame = 1
Query:  442 AARAEIPQFVKELIDRCPNTLHPMSQFSLAVTALNHDSSFAKAYSDGVHKKEYWKTTFDDSMDLIAKLPNIAGRIFRNVYRDGKM 696
            AAR+EIP+ V +L+D  P  LHPM+QFS+AVTAL  +S FAKAY+ GV KKEYW  TF+DS+DL+ KLP IA +I+RNV++DGK+
Sbjct:  154 AARSEIPEHVIQLLDSLPKDLHPMAQFSIAVTALESESKFAKAYAQGVSKKEYWSYTFEDSLDLLGKLPVIASKIYRNVFKDGKI 238          
BLAST of FC918259 vs. ExPASy Swiss-Prot
Match: CISY_LEIIN (Probable citrate synthase, mitochondrial OS=Leishmania infantum GN=LinJ18.0690 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.442e-38
Identity = 58/112 (51.79%), Postives = 80/112 (71.43%), Query Frame = 3
Query:   96 SAHAQSLKDRMAELIPKEIENVKAVRAAHGNKSFGEMTVDQAYGGMRGIKGLIWEGSVLDADQGIRFRGKTIPECQADLPTAPGGTEPLPEALFWLLLTGEVPTAEQVKGLS 431
            S+    +K++M     ++ + +  +R  HG++   + T+D  YGGMRGI GL++E S+LD+ +GIRFRG TI ECQ  LP APGG EPLPEA+FWLL+TGEVPT EQ +GL+
Sbjct:   19 SSVLDEMKEQMLRRSKEDHKKIGDLRKKHGHEKLCDATIDAVYGGMRGITGLVYEPSLLDSAEGIRFRGLTILECQEMLPKAPGGKEPLPEAMFWLLMTGEVPTEEQARGLN 130          

HSP 2 Score: 55.8398 bits (133), Expect = 3.442e-38
Identity = 27/67 (40.30%), Postives = 41/67 (61.19%), Query Frame = 1
Query:  472 KELIDRCPNTLHPMSQFSLAVTALNHDSSFAKAYSDG-VHKKEYWKTTFDDSMDLIAKLPNIAGRIF 669
            ++ I   P   HPM+ FS+ V AL   S FA AY+ G  +KK YW+   +DS+D++A+ P +A  I+
Sbjct:  146 QKAIAALPKNAHPMTAFSVGVLALQTYSKFAAAYAAGKSNKKTYWEYALEDSLDMLARTPAVAAMIY 212          
BLAST of FC918259 vs. ExPASy Swiss-Prot
Match: CISY_LEIBR (Probable citrate synthase, mitochondrial OS=Leishmania braziliensis GN=LbrM18_V2.0760 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.368e-36
Identity = 56/112 (50.00%), Postives = 77/112 (68.75%), Query Frame = 3
Query:   96 SAHAQSLKDRMAELIPKEIENVKAVRAAHGNKSFGEMTVDQAYGGMRGIKGLIWEGSVLDADQGIRFRGKTIPECQADLPTAPGGTEPLPEALFWLLLTGEVPTAEQVKGLS 431
            S+    +K++M +    E + +  +R  HG+    + ++D AY GMRGI GL++E S+LD  +GIRFR +TIPECQ  LP AP G E LPEA+FWLL+TGEVPTAEQ + L+
Sbjct:   19 SSVMSEMKEQMLKRSKVEKQTISELRKKHGDVKLSDASIDAAYCGMRGITGLVYEPSLLDPVEGIRFRNRTIPECQEVLPKAPNGCETLPEAMFWLLMTGEVPTAEQARALN 130          

HSP 2 Score: 55.0694 bits (131), Expect = 2.368e-36
Identity = 27/70 (38.57%), Postives = 42/70 (60.00%), Query Frame = 1
Query:  472 KELIDRCPNTLHPMSQFSLAVTALNHDSSFAKAYSDG-VHKKEYWKTTFDDSMDLIAKLPNIAGRIFRNV 678
            ++ I   P + HPM+ FS+ V AL   S FA AY+ G  +K  YW+   +DS+D++A+ P +A  I+  V
Sbjct:  146 QKAIAALPASTHPMTAFSVGVLALQTYSKFAAAYATGKSNKTTYWEYALEDSLDMLARTPAVAAMIYNRV 215          
BLAST of FC918259 vs. ExPASy Swiss-Prot
Match: CISY_CANTR (Citrate synthase, mitochondrial OS=Candida tropicalis GN=CIT PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.522e-36
Identity = 80/161 (49.69%), Postives = 102/161 (63.35%), Query Frame = 3
Query:   30 ATRSALRTS-VRPSFARTFASTPSAHAQSLKDRMAELIPKEIENVKAVRAAHGNKSFGEMTVDQAYGGMRGIKGLIWEGSVLDADQGIRFRGKTIPECQADLPTAPGGTEPLPEALFWLLLTGEVPTAEQVKGLSPGMGCSSRDPTVCQGID*SMPQHSPP 509
            A RS  R+S V  S  +    T +    +LK R+ E++P + E VK ++  +G    GE+ ++QAYGGMRGIKGL+WEGSVLD  +GIRFRG+TIP+ Q +LP APGG EPLPEALFWLLLTGEVPT  Q + LS      S  P   + +    P H  P
Sbjct:    3 ALRSFQRSSNVAKSTLKNSVRTYATAEPTLKQRLEEILPAKAEEVKQLKKDYGKTVIGEVLLEQAYGGMRGIKGLVWEGSVLDPIEGIRFRGRTIPDIQKELPKAPGGEEPLPEALFWLLLTGEVPTEAQTRALSEEFAARSALPKHVEELIDRSPSHLHP 163          

HSP 2 Score: 127.872 bits (320), Expect = 5.354e-29
Identity = 57/96 (59.38%), Postives = 80/96 (83.33%), Query Frame = 1
Query:  412 SRSRDCLQEWAARAEIPQFVKELIDRCPNTLHPMSQFSLAVTALNHDSSFAKAYSDGVHKKEYWKTTFDDSMDLIAKLPNIAGRIFRNVYRDGKMP 699
            +++R   +E+AAR+ +P+ V+ELIDR P+ LHPM+QFS+AVTAL  +S FAKAY+ GVHK EYWK T++DS++L+AKLP IA +I+RNV+ DGK+P
Sbjct:  131 AQTRALSEEFAARSALPKHVEELIDRSPSHLHPMAQFSIAVTALESESQFAKAYAKGVHKSEYWKYTYEDSIELLAKLPTIAAKIYRNVFHDGKLP 226          
The following BLAST results are available for this feature:
BLAST of FC918259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
CISY_CHICK5.087e-5658.56Citrate synthase, mitochondrial OS=Gallus gallus G... [more]
CISY_CITMA8.915e-4654.72Citrate synthase, mitochondrial OS=Citrus maxima G... [more]
CISY_SOLTU5.556e-4243.26Citrate synthase, mitochondrial OS=Solanum tuberos... [more]
CISY_FRAAN4.616e-4147.76Citrate synthase, mitochondrial OS=Fragaria ananas... [more]
CISY_NEUCR3.952e-4058.33Citrate synthase, mitochondrial OS=Neurospora cras... [more]
CISY_LEIMA5.403e-3950.00Probable citrate synthase, mitochondrial OS=Leishm... [more]
CISY1_YEAST1.271e-3858.27Citrate synthase, mitochondrial OS=Saccharomyces c... [more]
CISY_LEIIN3.442e-3851.79Probable citrate synthase, mitochondrial OS=Leishm... [more]
CISY_LEIBR2.368e-3650.00Probable citrate synthase, mitochondrial OS=Leishm... [more]
CISY_CANTR4.522e-3649.69Citrate synthase, mitochondrial OS=Candida tropica... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA29CD12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA29CD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918259 ID=FC918259; Name=FC918259; organism=Citrus clementina; type=EST; length=707bp
CACATACTCATATCACAATGAGCTTCCTTGCTACAAGATCAGCACTCAGG
ACTTCGGTCCGACCCTCTTTCGCGAGGACTTTCGCGTCCACCCCCTCTGC
TCACGCTCAATCCCTCAAGGACCGAATGGCCGAGCTCATCCCCAAGGAGA
TCGAGAATGTCAAAGCTGTCCGAGCCGCTCACGGAAACAAGTCTTTCGGT
GAAATGACTGTCGACCAAGCATACGGTGGAATGAGGGGTATCAAGGGTTT
AATCTGGGAAGGATCCGTCCTTGATGCCGACCAGGGAATCAGGTTCCGAG
GAAAGACTATCCCCGAGTGCCAGGCTGACCTTCCTACTGCTCCTGGTGGA
ACTGAGCCTTTGCCAGAGGCTTTGTTCTGGTTGCTCTTGACTGGTGAAGT
CCCTACTGCCGAGCAGGTCAAGGGATTGTCTCCAGGAATGGGCTGCTCGA
GCAGAGATCCCACAGTTTGTCAAGGAATTGATTGATCGATGCCCCAACAC
TCTCCACCCCATGTCTCAATTCTCCCTCGCCGTCACCGCCCTCAACCACG
ATTCCTCTTTCGCCAAGGCCTACTCGGATGGTGTCCACAAGAAGGAGTAC
TGGAAGACCACCTTTGACGATTCCATGGACCTCATTGCCAAGCTCCCCAA
CATTGCCGGACGAATCTTCCGAAACGTCTACCGTGACGGCAAGATGCCCC
GCCATTG
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