FC919305

Overview
NameFC919305
Unique NameFC919305
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length567
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_METTP (Elongation factor 1-alpha OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=tuf PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.120e-11
Identity = 30/63 (47.62%), Postives = 44/63 (69.84%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 190
            +D R+G   E+ P F+K GDA ++ + PTKPMV+E   + P LGRFA+RDM  T+A G+ ++V
Sbjct:  359 LDPRTGSVKEQNPAFIKTGDAAIISVRPTKPMVIEKVKEIPQLGRFAIRDMGMTIAAGMCQNV 421          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_SPOFR (Elongation factor 1-alpha (Fragment) OS=Spodoptera frugiperda PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.463e-11
Identity = 28/49 (57.14%), Postives = 40/49 (81.63%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 148
            +DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  365 VDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_PYRHO (Elongation factor 1-alpha OS=Pyrococcus horikoshii GN=tuf PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.463e-11
Identity = 29/65 (44.62%), Postives = 47/65 (72.31%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 196
            +D R+G  +E+ P+F+K GD+ +V + P KP+V+E   + P LGRFA+RDM  T+A G++ S++K
Sbjct:  362 VDPRTGNIVEENPQFIKTGDSAIVVLRPMKPVVLEPVKEIPQLGRFAIRDMGMTIAAGMVISIQK 426          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_METST (Elongation factor 1-alpha OS=Methanosphaera stadtmanae (strain DSM 3091) GN=tuf PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.463e-11
Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 178
            +D  +G+  E+ P FLK GDA +V + PTKPMV+E   + P +GRFA+RDM QTVA G+
Sbjct:  347 LDPATGQPKEENPDFLKTGDAALVTIKPTKPMVIENIKEIPHMGRFAIRDMGQTVAAGM 405          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_HELZE (Elongation factor 1-alpha (Fragment) OS=Heliothis zea PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.463e-11
Identity = 28/49 (57.14%), Postives = 40/49 (81.63%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 148
            +DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  365 VDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_HELVI (Elongation factor 1-alpha (Fragment) OS=Heliothis virescens PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.463e-11
Identity = 28/49 (57.14%), Postives = 40/49 (81.63%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 148
            +DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  365 VDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_HELGL (Elongation factor 1-alpha (Fragment) OS=Helicoverpa gelotopoeon PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.463e-11
Identity = 28/49 (57.14%), Postives = 40/49 (81.63%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 148
            +DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  365 VDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_HELDI (Elongation factor 1-alpha (Fragment) OS=Heliocheilus discalis PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.463e-11
Identity = 28/49 (57.14%), Postives = 40/49 (81.63%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 148
            +DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  365 VDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_HELAM (Elongation factor 1-alpha (Fragment) OS=Helicoverpa armigera PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.463e-11
Identity = 28/49 (57.14%), Postives = 40/49 (81.63%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 148
            +DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  365 VDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_HELAL (Elongation factor 1-alpha (Fragment) OS=Heliocheilus albipunctella PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.463e-11
Identity = 28/49 (57.14%), Postives = 40/49 (81.63%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 148
            +DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  365 VDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
The following BLAST results are available for this feature:
BLAST of FC919305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 150
Match NameE-valueIdentityDescription
EF1A_METTP1.120e-1147.62Elongation factor 1-alpha OS=Methanosaeta thermoph... [more]
EF1A_SPOFR1.463e-1157.14Elongation factor 1-alpha (Fragment) OS=Spodoptera... [more]
EF1A_PYRHO1.463e-1144.62Elongation factor 1-alpha OS=Pyrococcus horikoshii... [more]
EF1A_METST1.463e-1152.54Elongation factor 1-alpha OS=Methanosphaera stadtm... [more]
EF1A_HELZE1.463e-1157.14Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]
EF1A_HELVI1.463e-1157.14Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]
EF1A_HELGL1.463e-1157.14Elongation factor 1-alpha (Fragment) OS=Helicoverp... [more]
EF1A_HELDI1.463e-1157.14Elongation factor 1-alpha (Fragment) OS=Heliocheil... [more]
EF1A_HELAM1.463e-1157.14Elongation factor 1-alpha (Fragment) OS=Helicoverp... [more]
EF1A_HELAL1.463e-1157.14Elongation factor 1-alpha (Fragment) OS=Heliocheil... [more]

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Properties
Property NameValue
Genbank descriptionC06055A07T7 PCR Citrus clementina cDNA clone C06055A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919305 ID=FC919305; Name=FC919305; organism=Citrus clementina; type=EST; length=567bp
GATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCCAAGTTCTTGA
AGAATGGAGACGCCGGAATGGTTAAGATGATTCCCACCAAGCCCATGGTT
GTTGAGACCTTCTCCGATTACCCACCCCTTGGTCGTTTTGCTGTTAGGGA
CATGCGTCAGACTGTTGCTGTGGGTGTTATCAAGAGTGTTGAGAAGAAGG
ATCCCACAGGTGCGAAGGTCACCAAGTCCGCAGCCAAGAAGAAATGAGAA
ATTTTTATGGGTCTGTCTACAATAGTTAGGGTTTATTTTCTGTCTTTTTT
TATTTTCTTGTCTGTTTTTGTTTTGCATCAATGTTTCTGCAAACAGCCCT
ATTTGCTTCCACCAGTTTGCTGTTGAGCAATTGGGATGTTATCTTTCTGC
TTAACTGGCTGTGGTGGGGGTTCGGATTTTTATATTCTGAATTTGGTTAA
TAGCACTAAATTGAGTTGTGAAGTTTATAGACCAGCTGCTGGATGTCAAA
GTTGGTGGTTTTAATACATTTGGAAGCTCATTTTAAGCTCTTTGATTAAA
AAAAAAAAAAAAAAAAA
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