FC919305

Overview
NameFC919305
Unique NameFC919305
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length567
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A1_CRIGR (Elongation factor 1-alpha 1 OS=Cricetulus griseus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.479e-24
Identity = 53/66 (80.30%), Postives = 60/66 (90.91%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 199
            IDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  379 IDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A1_BOVIN (Elongation factor 1-alpha 1 OS=Bos taurus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.479e-24
Identity = 53/66 (80.30%), Postives = 60/66 (90.91%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 199
            IDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  379 IDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_CAEEL (Elongation factor 1-alpha OS=Caenorhabditis elegans GN=eft-3 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.276e-23
Identity = 51/67 (76.12%), Postives = 62/67 (92.54%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 202
            +DRR+GK++E  PKFLK+GDAG+V++IPTKP+ VE+F+DY PLGRFAVRDMRQTVAVGVIKSVEK D
Sbjct:  379 VDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVEKSD 445          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_ASPOR (Elongation factor 1-alpha OS=Aspergillus oryzae GN=tef1 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.276e-23
Identity = 51/65 (78.46%), Postives = 61/65 (93.85%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 196
            IDRR+GK +E +PKF+K+GDA +VKMIP+KPM VE+F+D+PPLGRFAVRDMRQTVAVGVIKSVEK
Sbjct:  378 IDRRTGKSVEDKPKFIKSGDAAIVKMIPSKPMCVESFTDFPPLGRFAVRDMRQTVAVGVIKSVEK 442          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_YEAST (Elongation factor 1-alpha OS=Saccharomyces cerevisiae GN=TEF1 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.666e-23
Identity = 51/66 (77.27%), Postives = 59/66 (89.39%), Query Frame = 2
Query:    5 DRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 202
            DRRSGK+LE  PKFLK+GDA +VK +P+KPM VE FS+YPPLGRFAVRDMRQTVAVGVIKSV+K +
Sbjct:  378 DRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVDKTE 443          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_ARTSA (Elongation factor 1-alpha OS=Artemia salina PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 1.666e-23
Identity = 50/68 (73.53%), Postives = 59/68 (86.76%), Query Frame = 2
Query:    5 DRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPT 208
            DRR+GK  E EPKF+K+GDA M+ ++P+KP+ VE FSD+PPLGRFAVRDMRQTVAVGVIKSV  KDPT
Sbjct:  380 DRRTGKTTEAEPKFIKSGDAAMITLVPSKPLCVEAFSDFPPLGRFAVRDMRQTVAVGVIKSVNFKDPT 447          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1AC_PORPU (Elongation factor 1-alpha C OS=Porphyra purpurea GN=TEF-C PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.666e-23
Identity = 52/70 (74.29%), Postives = 60/70 (85.71%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 211
            +DRRSGK+LE  PK +K+GDA MVKM+ +KPM VE F+ YPPLGRFAVRDMRQTVAVGVIKSVEKK+  G
Sbjct:  371 MDRRSGKKLEDSPKMIKSGDAAMVKMVASKPMCVEAFTSYPPLGRFAVRDMRQTVAVGVIKSVEKKEVEG 440          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_SCHCO (Elongation factor 1-alpha OS=Schizophyllum commune GN=TEF1 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.176e-23
Identity = 49/70 (70.00%), Postives = 63/70 (90.00%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 211
            IDRR+GK LE  PKF+K+GDA +VK++P+KPM VE++++YPPLGRFAVRDMRQTVAVG+IKSV+K D +G
Sbjct:  377 IDRRTGKSLEASPKFVKSGDACIVKLVPSKPMCVESYNEYPPLGRFAVRDMRQTVAVGIIKSVDKTDKSG 446          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_PORYE (Elongation factor 1-alpha OS=Porphyra yezoensis PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.176e-23
Identity = 52/70 (74.29%), Postives = 60/70 (85.71%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 211
            +DRRSGK+LE  PK +K+GDA MVKM+ +KPM VE F+ YPPLGRFAVRDMRQTVAVGVIKSVEKK+  G
Sbjct:  371 MDRRSGKKLEDTPKMIKSGDAAMVKMVASKPMCVEAFTQYPPLGRFAVRDMRQTVAVGVIKSVEKKEVEG 440          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_PUCGR (Elongation factor 1-alpha OS=Puccinia graminis GN=TEF PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 2.842e-23
Identity = 52/67 (77.61%), Postives = 60/67 (89.55%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 202
            IDRR+GK LE+ PKF+K+GDA +VKM+P+K M VE F+DYPPLGRFAVRDMRQTVAVGVIKSVEK D
Sbjct:  376 IDRRTGKALEEAPKFVKSGDACLVKMVPSKAMCVEPFADYPPLGRFAVRDMRQTVAVGVIKSVEKTD 442          
The following BLAST results are available for this feature:
BLAST of FC919305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 150
Match NameE-valueIdentityDescription
EF1A1_CRIGR7.479e-2480.30Elongation factor 1-alpha 1 OS=Cricetulus griseus ... [more]
EF1A1_BOVIN7.479e-2480.30Elongation factor 1-alpha 1 OS=Bos taurus GN=EEF1A... [more]
EF1A_CAEEL1.276e-2376.12Elongation factor 1-alpha OS=Caenorhabditis elegan... [more]
EF1A_ASPOR1.276e-2378.46Elongation factor 1-alpha OS=Aspergillus oryzae GN... [more]
EF1A_YEAST1.666e-2377.27Elongation factor 1-alpha OS=Saccharomyces cerevis... [more]
EF1A_ARTSA1.666e-2373.53Elongation factor 1-alpha OS=Artemia salina PE=1 S... [more]
EF1AC_PORPU1.666e-2374.29Elongation factor 1-alpha C OS=Porphyra purpurea G... [more]
EF1A_SCHCO2.176e-2370.00Elongation factor 1-alpha OS=Schizophyllum commune... [more]
EF1A_PORYE2.176e-2374.29Elongation factor 1-alpha OS=Porphyra yezoensis PE... [more]
EF1A_PUCGR2.842e-2377.61Elongation factor 1-alpha OS=Puccinia graminis GN=... [more]

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Properties
Property NameValue
Genbank descriptionC06055A07T7 PCR Citrus clementina cDNA clone C06055A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919305 ID=FC919305; Name=FC919305; organism=Citrus clementina; type=EST; length=567bp
GATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCCAAGTTCTTGA
AGAATGGAGACGCCGGAATGGTTAAGATGATTCCCACCAAGCCCATGGTT
GTTGAGACCTTCTCCGATTACCCACCCCTTGGTCGTTTTGCTGTTAGGGA
CATGCGTCAGACTGTTGCTGTGGGTGTTATCAAGAGTGTTGAGAAGAAGG
ATCCCACAGGTGCGAAGGTCACCAAGTCCGCAGCCAAGAAGAAATGAGAA
ATTTTTATGGGTCTGTCTACAATAGTTAGGGTTTATTTTCTGTCTTTTTT
TATTTTCTTGTCTGTTTTTGTTTTGCATCAATGTTTCTGCAAACAGCCCT
ATTTGCTTCCACCAGTTTGCTGTTGAGCAATTGGGATGTTATCTTTCTGC
TTAACTGGCTGTGGTGGGGGTTCGGATTTTTATATTCTGAATTTGGTTAA
TAGCACTAAATTGAGTTGTGAAGTTTATAGACCAGCTGCTGGATGTCAAA
GTTGGTGGTTTTAATACATTTGGAAGCTCATTTTAAGCTCTTTGATTAAA
AAAAAAAAAAAAAAAAA
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