FC919305

Overview
NameFC919305
Unique NameFC919305
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length567
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A1_EUPCR (Elongation factor 1-alpha 1 OS=Euplotes crassus GN=EFA1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.552e-20
Identity = 44/65 (67.69%), Postives = 56/65 (86.15%), Query Frame = 2
Query:    5 DRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 199
            D+RSGK  E+ PKFLK GDAG++++ P+KP+ VETF+ Y PLGRFAVRDMRQTVAVGVI+ ++KK
Sbjct:  368 DKRSGKMTEENPKFLKAGDAGLIRLSPSKPLCVETFATYAPLGRFAVRDMRQTVAVGVIQEIKKK 432          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A2_DROME (Elongation factor 1-alpha 2 OS=Drosophila melanogaster GN=Ef1alpha100E PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 8.557e-20
Identity = 44/68 (64.71%), Postives = 57/68 (83.82%), Query Frame = 2
Query:    5 DRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPT 208
            DRR+GK  E EPK +K+GDA ++ ++P+KP+ VE+F ++PPLGRFAVRDMRQTVAVGVIKSV  K+ T
Sbjct:  380 DRRTGKTTETEPKAIKSGDAAIIVLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKSVNFKETT 447          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_PLAFK (Elongation factor 1-alpha OS=Plasmodium falciparum (isolate K1 / Thailand) GN=MEF-1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.460e-19
Identity = 41/67 (61.19%), Postives = 58/67 (86.57%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 202
            ID+RSGK +E+ PK +K+GD+ +V + P KPMVVETF++YPPLGRFA+RDMRQT+AVG+I  +++K+
Sbjct:  365 IDKRSGKVVEENPKAIKSGDSALVSLEPKKPMVVETFTEYPPLGRFAIRDMRQTIAVGIINQLKRKN 431          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_BOMMO (Elongation factor 1-alpha OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.906e-19
Identity = 43/70 (61.43%), Postives = 57/70 (81.43%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 211
            +DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVRDMRQTVAVGVIK+V  K+  G
Sbjct:  379 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGG 448          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_ENTHI (Elongation factor 1-alpha OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.460e-19
Identity = 42/64 (65.62%), Postives = 57/64 (89.06%), Query Frame = 2
Query:    2 IDRRSGKELEK-EPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 190
            IDRR+GK +E  EP+++KNGD+ +VK++PTKP+ VE F+ +PPLGRFAVRDM+QTVAVGV+K+V
Sbjct:  365 IDRRTGKSMEGGEPEYIKNGDSALVKIVPTKPLCVEEFAKFPPLGRFAVRDMKQTVAVGVVKAV 428          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_BLAHO (Elongation factor 1-alpha OS=Blastocystis hominis PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.460e-19
Identity = 42/62 (67.74%), Postives = 53/62 (85.48%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKS 187
            +D+R+GK L + P  +KNG + M +++P+KPM VETFSDYPPLGRFAVRDMRQTVAVG+IKS
Sbjct:  368 MDKRTGKVLRENPDIVKNGKSMMAQLVPSKPMCVETFSDYPPLGRFAVRDMRQTVAVGIIKS 429          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A1_XENLA (Elongation factor 1-alpha OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.108e-18
Identity = 43/66 (65.15%), Postives = 52/66 (78.79%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 199
            IDRR+GK+LE  P  LK+GDA ++ + P KP  VE F DYPPLGRFA RD++QTVAVGV+KSVE K
Sbjct:  382 IDRRTGKKLEDNPGLLKSGDAAIITLKPIKPFCVERFFDYPPLGRFAARDLKQTVAVGVVKSVEHK 447          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_DICDI (Elongation factor 1-alpha OS=Dictyostelium discoideum GN=eef1a1 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 2.753e-18
Identity = 46/71 (64.79%), Postives = 56/71 (78.87%), Query Frame = 2
Query:    2 IDRRSGKELEKEPK---FLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 205
            +DRR+G  + KE      LKNGDA MV++ P++PM VE+F++YPPLGRFAVRDMRQTVAVGVIKS  KK P
Sbjct:  367 VDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRPMCVESFTEYPPLGRFAVRDMRQTVAVGVIKSTVKKAP 437          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A2_EUPCR (Elongation factor 1-alpha 2 OS=Euplotes crassus GN=EFA2 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.510e-16
Identity = 39/68 (57.35%), Postives = 54/68 (79.41%), Query Frame = 2
Query:    5 DRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPT 208
            + R+GK +E+ PKFLKNG++G+V+++PTKP+ VE FS Y  LGRF +RDM++TVAVGVI+ V  K  T
Sbjct:  365 EARTGKLIEEAPKFLKNGESGIVELVPTKPLCVEEFSKYAALGRFVIRDMKRTVAVGVIQEVIHKKET 432          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_METS5 (Elongation factor 1-alpha OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=tuf PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.790e-16
Identity = 37/64 (57.81%), Postives = 50/64 (78.12%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 193
            +D ++GKE EK P+F+K G++ +VK  P KP+ VE FSD+PPLGRFA+RDM +TV VGVI  V+
Sbjct:  365 LDPKTGKEAEKNPQFIKQGESAIVKFKPIKPLCVEKFSDFPPLGRFAMRDMGKTVGVGVINDVK 428          
The following BLAST results are available for this feature:
BLAST of FC919305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 150
Match NameE-valueIdentityDescription
EF1A1_EUPCR6.552e-2067.69Elongation factor 1-alpha 1 OS=Euplotes crassus GN... [more]
EF1A2_DROME8.557e-2064.71Elongation factor 1-alpha 2 OS=Drosophila melanoga... [more]
EF1A_PLAFK1.460e-1961.19Elongation factor 1-alpha OS=Plasmodium falciparum... [more]
EF1A_BOMMO1.906e-1961.43Elongation factor 1-alpha OS=Bombyx mori PE=2 SV=1[more]
EF1A_ENTHI9.460e-1965.63Elongation factor 1-alpha OS=Entamoeba histolytica... [more]
EF1A_BLAHO9.460e-1967.74Elongation factor 1-alpha OS=Blastocystis hominis ... [more]
EF1A1_XENLA2.108e-1865.15Elongation factor 1-alpha OS=Xenopus laevis PE=1 S... [more]
EF1A_DICDI2.753e-1864.79Elongation factor 1-alpha OS=Dictyostelium discoid... [more]
EF1A2_EUPCR1.510e-1657.35Elongation factor 1-alpha 2 OS=Euplotes crassus GN... [more]
EF1A_METS59.790e-1657.81Elongation factor 1-alpha OS=Metallosphaera sedula... [more]

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Properties
Property NameValue
Genbank descriptionC06055A07T7 PCR Citrus clementina cDNA clone C06055A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919305 ID=FC919305; Name=FC919305; organism=Citrus clementina; type=EST; length=567bp
GATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCCAAGTTCTTGA
AGAATGGAGACGCCGGAATGGTTAAGATGATTCCCACCAAGCCCATGGTT
GTTGAGACCTTCTCCGATTACCCACCCCTTGGTCGTTTTGCTGTTAGGGA
CATGCGTCAGACTGTTGCTGTGGGTGTTATCAAGAGTGTTGAGAAGAAGG
ATCCCACAGGTGCGAAGGTCACCAAGTCCGCAGCCAAGAAGAAATGAGAA
ATTTTTATGGGTCTGTCTACAATAGTTAGGGTTTATTTTCTGTCTTTTTT
TATTTTCTTGTCTGTTTTTGTTTTGCATCAATGTTTCTGCAAACAGCCCT
ATTTGCTTCCACCAGTTTGCTGTTGAGCAATTGGGATGTTATCTTTCTGC
TTAACTGGCTGTGGTGGGGGTTCGGATTTTTATATTCTGAATTTGGTTAA
TAGCACTAAATTGAGTTGTGAAGTTTATAGACCAGCTGCTGGATGTCAAA
GTTGGTGGTTTTAATACATTTGGAAGCTCATTTTAAGCTCTTTGATTAAA
AAAAAAAAAAAAAAAAA
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