FC919311

Overview
NameFC919311
Unique NameFC919311
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length310
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC919311 vs. ExPASy Swiss-Prot
Match: 1A111_ARATH (1-aminocyclopropane-1-carboxylate synthase 11 OS=Arabidopsis thaliana GN=ACS11 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.204e-22
Identity = 54/103 (52.43%), Postives = 68/103 (66.02%), Query Frame = 1
Query:    1 P*NPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGFV 309
            P NPLGT   RE L  +++F + K IH+V DEIY+ TVF     F S+ E+           IH+VYSLSKD+G PGFRVG+IYS N++VVS A KMSSFG +
Sbjct:  198 PSNPLGTSTTREELDLLLTFTSTKKIHMVSDEIYSGTVFDSPE-FTSVLEVAKDKNMGLDGKIHVVYSLSKDLGLPGFRVGLIYSNNEKVVSAATKMSSFGLI 299          
BLAST of FC919311 vs. ExPASy Swiss-Prot
Match: 1A11_ORYSJ (1-aminocyclopropane-1-carboxylate synthase 1 OS=Oryza sativa subsp. japonica GN=ACC1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.171e-22
Identity = 58/107 (54.21%), Postives = 69/107 (64.49%), Query Frame = 1
Query:    1 P*NPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKE-SSFVSIAEII---DQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGFV 309
            P NPLGT   R  L+ IV F+  K IHL+ DEIYA T F +  + FVS  E++   D   A   + +H+VYSLSKD+G PGFRVG IYS N  VVS A KMSSFG V
Sbjct:  212 PSNPLGTASPRADLETIVDFVAAKGIHLISDEIYAGTAFAEPPAGFVSALEVVAGRDGGGADVSDRVHVVYSLSKDLGLPGFRVGAIYSANAAVVSAATKMSSFGLV 318          
BLAST of FC919311 vs. ExPASy Swiss-Prot
Match: 1A11_ORYSI (1-aminocyclopropane-1-carboxylate synthase 1 OS=Oryza sativa subsp. indica GN=ACC1 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 7.171e-22
Identity = 58/107 (54.21%), Postives = 69/107 (64.49%), Query Frame = 1
Query:    1 P*NPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKE-SSFVSIAEII---DQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGFV 309
            P NPLGT   R  L+ IV F+  K IHL+ DEIYA T F +  + FVS  E++   D   A   + +H+VYSLSKD+G PGFRVG IYS N  VVS A KMSSFG V
Sbjct:  212 PSNPLGTASPRADLETIVDFVAAKGIHLISDEIYAGTAFAEPPAGFVSALEVVAGRDGGGADVSDRVHVVYSLSKDLGLPGFRVGAIYSANAAVVSAATKMSSFGLV 318          
BLAST of FC919311 vs. ExPASy Swiss-Prot
Match: 1A112_ARATH (Probable aminotransferase ACS12 OS=Arabidopsis thaliana GN=ACS12 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 6.071e-21
Identity = 49/103 (47.57%), Postives = 70/103 (67.96%), Query Frame = 1
Query:    1 P*NPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGFV 309
            P NP+G  L RETL DI+ F  EKNIH++ DEI+A +V+  +  FVS+AEI       ++  +HI+Y LSKD+  PGFR G+IYS+++ VV+ A+K+  F  V
Sbjct:  266 PSNPVGNILSRETLCDILRFAQEKNIHVISDEIFAGSVYG-DKEFVSMAEIAGSG-EFDKTRVHIIYGLSKDLSIPGFRAGVIYSFHEDVVNAAKKLMRFSSV 366          
BLAST of FC919311 vs. ExPASy Swiss-Prot
Match: 1A110_ARATH (Probable aminotransferase ACS10 OS=Arabidopsis thaliana GN=ACS10 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.071e-21
Identity = 45/99 (45.45%), Postives = 69/99 (69.70%), Query Frame = 1
Query:    1 P*NPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS 297
            P NP+G+ L RE L  ++ F  E+NIH++ +EI+A +V  +E  FVS+AEI+D +   +R  +HIVY LSKD+ F G R   IYS+N+ V+S +RK+++
Sbjct:  324 PSNPMGSLLSRENLYALLDFARERNIHIISNEIFAGSVHGEEGEFVSMAEIVDTEENIDRERVHIVYDLSKDLSFRGLRSAAIYSFNESVLSASRKLTT 422          
BLAST of FC919311 vs. ExPASy Swiss-Prot
Match: 1A14_ARATH (1-aminocyclopropane-1-carboxylate synthase 4 OS=Arabidopsis thaliana GN=ACS4 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.766e-20
Identity = 57/107 (53.27%), Postives = 69/107 (64.49%), Query Frame = 1
Query:    1 P*NPLGTFLDRETLKDIVSFINE-KNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNR---NLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGFV 309
            P NPLGT   +  L  +  FI + KNIHLV DEIY+ TVF   S F+S+ EI+  +   N    N +HIV SLSKD+G PGFRVG IYS +  V+S A KMSSFG V
Sbjct:  200 PSNPLGTTTTQTELNILFDFITKNKNIHLVSDEIYSGTVFNS-SEFISVMEILKNNQLENTDVLNRVHIVCSLSKDLGLPGFRVGAIYSNDKDVISAATKMSSFGLV 305          
BLAST of FC919311 vs. ExPASy Swiss-Prot
Match: 1A1L2_HUMAN (1-aminocyclopropane-1-carboxylate synthase-like protein 2 OS=Homo sapiens GN=ACCSL PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.499e-11
Identity = 35/103 (33.98%), Postives = 57/103 (55.34%), Query Frame = 1
Query:    1 P*NPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGFV 309
            P NPLG     ++L   + F    N+H++ DEIY  +VF +  +F S   I+      + N  H+++  SKD G  GFR G +Y++N +V S    +S+FG++
Sbjct:  328 PQNPLGDIYSPDSLMKYLEFAKRYNLHVIIDEIYMLSVFDESITFHS---ILSMKSLPDSNRTHVIWGTSKDFGISGFRFGALYTHNKEVASA---VSAFGYL 424          
BLAST of FC919311 vs. ExPASy Swiss-Prot
Match: 1A1L2_MOUSE (1-aminocyclopropane-1-carboxylate synthase-like protein 2 OS=Mus musculus GN=Accsl PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.957e-11
Identity = 34/102 (33.33%), Postives = 57/102 (55.88%), Query Frame = 1
Query:    1 P*NPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGF 306
            P NPLG    + +L++ + F     +H++ DEIY  +VF    +F S+  I D     + N+ H+++  SKD G  G R G++Y++N +V S    M +FG+
Sbjct:  350 PQNPLGDVYTQSSLQEYLVFAKTHKLHVIMDEIYMLSVFEPSVTFHSVLSIKDLP---DPNMTHMIWGTSKDFGMSGIRFGVLYTHNKEVASA---MKAFGY 445          
The following BLAST results are available for this feature:
BLAST of FC919311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
1A111_ARATH4.204e-2252.431-aminocyclopropane-1-carboxylate synthase 11 OS=A... [more]
1A11_ORYSJ7.171e-2254.211-aminocyclopropane-1-carboxylate synthase 1 OS=Or... [more]
1A11_ORYSI7.171e-2254.211-aminocyclopropane-1-carboxylate synthase 1 OS=Or... [more]
1A112_ARATH6.071e-2147.57Probable aminotransferase ACS12 OS=Arabidopsis tha... [more]
1A110_ARATH6.071e-2145.45Probable aminotransferase ACS10 OS=Arabidopsis tha... [more]
1A14_ARATH1.766e-2053.271-aminocyclopropane-1-carboxylate synthase 4 OS=Ar... [more]
1A1L2_HUMAN1.499e-1133.981-aminocyclopropane-1-carboxylate synthase-like pr... [more]
1A1L2_MOUSE1.957e-1133.331-aminocyclopropane-1-carboxylate synthase-like pr... [more]

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Properties
Property NameValue
Genbank descriptionC06055B01T7 PCR Citrus clementina cDNA clone C06055B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919311 ID=FC919311; Name=FC919311; organism=Citrus clementina; type=EST; length=310bp
CCTTAGAACCCACTGGGCACTTTCTTAGACCGAGAAACCCTAAAAGATAT
AGTGAGCTTCATCAATGAAAAGAACATCCATTTAGTCTGTGATGAGATTT
ATGCTGCCACAGTGTTCACCAAGGAGTCTAGTTTCGTTAGCATCGCGGAG
ATAATAGACCAAGACATTGCATGCAATCGCAATCTCATTCACATTGTATA
CAGTCTTTCTAAGGACATGGGATTCCCTGGCTTTAGGGTCGGTATCATTT
ACTCGTACAATGATCAAGTAGTGAGCTGTGCTCGCAAAATGTCAAGTTTT
GGCTTCGTTT
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