FC919314

Overview
NameFC919314
Unique NameFC919314
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length444
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC919314 vs. ExPASy Swiss-Prot
Match: ZDS_CAPAN (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Capsicum annuum GN=ZDS PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.583e-12
Identity = 45/109 (41.28%), Postives = 61/109 (55.96%), Query Frame = 2
Query:    2 DSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ-DYVLLAARGKGRLAE 325
            + EII    K++  LFP     + + +      VVK  +S+Y+  P  +P RP Q++PVE F+LAG YTKQ Y+ SMEGA LSG+  +  I      LLA R K   AE
Sbjct:  468 NEEIIRRVSKQVLALFPSSQGLEVTWSS-----VVKIGQSLYREGPGKDPFRPDQKTPVENFFLAGSYTKQDYIDSMEGATLSGRQASAYICDAGEQLLALRKKIAAAE 571          
BLAST of FC919314 vs. ExPASy Swiss-Prot
Match: ZDS_MAIZE (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Zea mays GN=ZDS1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 7.817e-12
Identity = 35/85 (41.18%), Postives = 53/85 (62.35%), Query Frame = 2
Query:    2 DSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGK 256
            + EII    K++ +LFP     + + +      VVK  +S+Y+  P  +P RP Q++PV+ F+L+G YTKQ Y+ SMEGA LSG+
Sbjct:  453 NEEIISKVQKQVVELFPSSRGLEVTWSS-----VVKIGQSLYREAPGNDPFRPDQKTPVKNFFLSGSYTKQDYIDSMEGATLSGR 532          
BLAST of FC919314 vs. ExPASy Swiss-Prot
Match: ZDS_ARATH (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=ZDS1 PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 1.021e-11
Identity = 39/113 (34.51%), Postives = 62/113 (54.87%), Query Frame = 2
Query:    2 DSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAARGKGRLAEASMCP 340
            + +II+    ++ +LFP     + + +      VVK  +S+Y+  P  +P RP Q++P++ F+LAG YTKQ Y+ SMEGA LSG+  +  I      LA   K   + A+  P
Sbjct:  445 NDKIIEKVAMQVTELFPSSRGLEVTWSS-----VVKIAQSLYREAPGKDPFRPDQKTPIKNFFLAGSYTKQDYIDSMEGATLSGRQASSYICDAGEELAELNKKLSSSATAVP 552          
BLAST of FC919314 vs. ExPASy Swiss-Prot
Match: ZDS_TARER (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Tagetes erecta PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.333e-11
Identity = 41/103 (39.81%), Postives = 58/103 (56.31%), Query Frame = 2
Query:    2 DSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAARGK 310
            + EII    K++  LFP     + + +      VVK  +S+Y+  P  +P RP Q++PV+ F+LAG YTKQ Y+ SMEGA LSG+  +  I      LAA  K
Sbjct:  471 NEEIISRVSKQVLALFPSSQGLEVTWSS-----VVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAFICDAGEELAALRK 568          
BLAST of FC919314 vs. ExPASy Swiss-Prot
Match: ZDS_SYNY3 (Zeta-carotene desaturase OS=Synechocystis sp. (strain PCC 6803) GN=crtQ PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.333e-11
Identity = 37/90 (41.11%), Postives = 56/90 (62.22%), Query Frame = 2
Query:   26 MKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLL 295
            +K++  LFP   +AD +   +  Y V+K  +S+Y+  P  +  RP Q +P+  F+LAG YT+Q Y+ SMEGA LSG+  AQAI+ +   L
Sbjct:  397 LKQVKALFPS--AADLN---MTWYSVIKLAQSLYREAPGMDLFRPSQATPIANFFLAGSYTQQDYIDSMEGATLSGRQAAQAILANQARL 481          
BLAST of FC919314 vs. ExPASy Swiss-Prot
Match: ZDS_SOLLC (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Solanum lycopersicum GN=ZDS PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.333e-11
Identity = 43/109 (39.45%), Postives = 61/109 (55.96%), Query Frame = 2
Query:    2 DSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ-DYVLLAARGKGRLAE 325
            + EII    K++  LFP     + + +      V+K  +S+Y+  P  +P RP Q++PVE F+LAG YTKQ Y+ SMEGA LSG+  +  I      L+A R K   AE
Sbjct:  468 NDEIIKRVTKQVLALFPSSQGLEVTWSS-----VLKIGQSLYREGPGKDPFRPDQKTPVENFFLAGSYTKQDYIDSMEGATLSGRQASAYICNVGEQLMALRKKITAAE 571          
BLAST of FC919314 vs. ExPASy Swiss-Prot
Match: ZDS_NARPS (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=ZDS1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.741e-11
Identity = 41/100 (41.00%), Postives = 57/100 (57.00%), Query Frame = 2
Query:   11 IIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAARGK 310
            II+   K++  LFP     +     ++   VVK  +S+Y+  P  +P RP Q++PV+ F+LAG YTKQ Y+ SMEGA LSG+  A  I      LAA  K
Sbjct:  456 IIERVRKQVLDLFPSSQGLE-----VLWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQAAAYICSAGEDLAALRK 550          
BLAST of FC919314 vs. ExPASy Swiss-Prot
Match: ZDS_ANASP (Zeta-carotene desaturase OS=Anabaena sp. (strain PCC 7120) GN=crtQ PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 5.067e-11
Identity = 33/91 (36.26%), Postives = 54/91 (59.34%), Query Frame = 2
Query:   11 IIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQD 283
            I    +K++ +LFP        +  +  Y VVK  +S+Y+  P  +  RP Q++P+  F+LAG YT+Q Y+ SMEGA +SG+  A+ I+ +
Sbjct:  391 IAQHVLKQVYELFPSS-----RELNMTWYSVVKLAQSLYREAPGMDVYRPNQKTPIANFFLAGSYTQQDYIDSMEGATVSGRRAAKVILDN 476          
The following BLAST results are available for this feature:
BLAST of FC919314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
ZDS_CAPAN4.583e-1241.28Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
ZDS_MAIZE7.817e-1241.18Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
ZDS_ARATH1.021e-1134.51Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
ZDS_TARER1.333e-1139.81Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
ZDS_SYNY31.333e-1141.11Zeta-carotene desaturase OS=Synechocystis sp. (str... [more]
ZDS_SOLLC1.333e-1139.45Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
ZDS_NARPS1.741e-1141.00Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
ZDS_ANASP5.067e-1136.26Zeta-carotene desaturase OS=Anabaena sp. (strain P... [more]

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Properties
Property NameValue
Genbank descriptionC06055B05T7 PCR Citrus clementina cDNA clone C06055B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919314 ID=FC919314; Name=FC919314; organism=Citrus clementina; type=EST; length=444bp
TGACTCAGAAATCATTGATGCTACAATGAAGGAGCTTGCAAAACTATTTC
CTGATGAAATTTCTGCTGATCAGAGCAAAGCAAAGATTGTGAAGTACCAT
GTCGTCAAAACGCCAAGGTCTGTATATAAAACCATCCCAAATTGTGAACC
TTGCCGTCCCTTACAAAGGTCTCCTGTAGAAGGGTTTTATTTAGCCGGGG
ATTACACAAAACAGAAGTATTTGGCTTCAATGGAAGGTGCTGTTTTGTCA
GGGAAGCTTTGTGCACAAGCAATTGTACAGGACTATGTGCTGCTTGCTGC
ACGGGGGAAAGGGAGATTGGCTGAGGCAAGCATGTGTCCATAAGCTGGAG
GCAGGGTTTATAATTGGAGCTTGAATGTCAAAGGTAATTATTAAACAATA
TAGATATGATTTGTCAACTCGATTAAAAGAAAAAAAAAAAAAAA
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