FC919321

Overview
NameFC919321
Unique NameFC919321
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length482
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC919321 vs. ExPASy Swiss-Prot
Match: CCD4_ARATH (Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.495e-23
Identity = 56/134 (41.79%), Postives = 79/134 (58.96%), Query Frame = -3
Query:   10 GELKTVGRXDFSGQLKSTMIAHPKVDPVTGDLFAQSYDVVKKPYLKYFQFSPQGIKSPDVXI-PLEEPTMMHDFAITENFVVVPDQQVVFKXKEM---IRGGSPVIYDKNKVSRFGILDKNATDASKMKWXXAP 399
            G+++T+GR DF G+L  +M AHPK DP+TG+ FA  Y  V  P+L YF+F   G K  DV I  +  P+ +HDFAIT+   +  + Q+  +   +   + GGSPV  D  K  R G++ K A D S+MKW   P
Sbjct:  266 GDIETIGRYDFDGKLAMSMTAHPKTDPITGETFAFRYGPV-PPFLTYFRFDSAGKKQRDVPIFSMTSPSFLHDFAITKRHAIFAEIQLGMRMNMLDLVLEGGSPVGTDNGKTPRLGVIPKYAGDESEMKWFEVP 398          
BLAST of FC919321 vs. ExPASy Swiss-Prot
Match: CCD1_PEA (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.495e-23
Identity = 59/158 (37.34%), Postives = 85/158 (53.80%), Query Frame = -3
Query:    1 VGHVXR*LALSXGRHSI-------GELKTVGRXDFSGQLKSTMIAHPKVDPVTGDLFAQSYDVVKKPYLKYFQFSPQGIKSPDVXIPLEEPTMMHDFAITENFVVVPDQQVVFKXKEMIRGGSPVI-YDKNKVSRFGILDKNATDASKMKWXXAPDCF 450
            V H  + LALS G           G+L+T+G  D+  +L     AHPKVDP TG++F   Y     PY+ Y   S  G     V I + +P MMHDFAITEN+ +  D  + F+ KEM++  + +  +D  K +RFG+L + A D   ++W   P+CF
Sbjct:  177 VYHHQKLLALSEGDKPYAIKVFEDGDLQTLGMLDYDKRLGHNFTAHPKVDPFTGEMFTFGYSHTA-PYVTYRVISKDGFMQDPVPITISDPVMMHDFAITENYSIFMDLPLYFRPKEMVKNKTLIFSFDSTKKARFGVLPRYAKDDKHIRWFELPNCF 333          
BLAST of FC919321 vs. ExPASy Swiss-Prot
Match: CCD_CROSA (Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Crocus sativus GN=CCD PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 5.558e-23
Identity = 53/134 (39.55%), Postives = 78/134 (58.21%), Query Frame = -3
Query:    1 GELKTVGRXDFSGQLKSTMIAHPKVDPVTGDLFAQSYDVVKKPYLKYFQFSPQGIKSPDVXIPLEEPTMMHDFAITENFVVVPDQQVVFKXKEMIRGGSPVI-YDKNKVSRFGILDKNATDASKMKWXXAPDCF 399
            G+L+T+G  D+  +L  +  AHPKVDP T ++F   Y     PY+ Y   S  G+    V I +    MMHDFAITEN+ +  D  + F+ KEM++GG  +  +D  K +RFG+L + A D S ++W   P+CF
Sbjct:  205 GDLQTLGLLDYDKRLSHSFTAHPKVDPFTDEMFTFGY-AHTPPYVTYRVISKDGVMRDPVPITIPASVMMHDFAITENYSIFMDLPLYFQPKEMVKGGKLIFSFDATKKARFGVLPRYAKDDSLIRWFELPNCF 337          
The following BLAST results are available for this feature:
BLAST of FC919321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CCD4_ARATH2.495e-2341.79Probable carotenoid cleavage dioxygenase 4, chloro... [more]
CCD1_PEA2.495e-2337.34Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD_CROSA5.558e-2339.55Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Cr... [more]

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Properties
Property NameValue
Genbank descriptionC06055C02T7 PCR Citrus clementina cDNA clone C06055C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919321 ID=FC919321; Name=FC919321; organism=Citrus clementina; type=EST; length=482bp
GAAGCAATCAGGGGCGTNANTCCACTTCATTTTGGAAGCATCGGTGGCAT
TCTTGTCCAAAATCCCAAATCTTGACACCTTGTTCTTGTCATAAATCACA
GGGGAGCCACCTCGGATCATCTCTTTNAACTTGAACACCACTTGCTGGTC
AGGCACCACAACAAAATTCTCAGTGATTGCGAAATCATGCATCATTGTAG
GCTCCTCAAGGGGAATNTCAACGTCCGGAGACTTGATCCCTTGGGGCGAA
AACTGAAAGTACTTCAAGTAAGGCTTCTTGACAACGTCATAACTCTGAGC
AAACAAATCACCCGTCACGGGATCAACTTTCGGATGAGCTATCATCGTGG
ACTTGAGCTGGCCGCTGAAGTCNAAACGGCCGACTGTTTTTAGCTCCCCG
ATGGAGTGACGCCCACNTGATAAAGCAAGTCATCTTNATACATGGCCAAC
AAACAGTTGTTGAAGTAAANAAAGACGGCGTT
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