FC919326

Overview
NameFC919326
Unique NameFC919326
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC919326 vs. ExPASy Swiss-Prot
Match: CCD4_ARATH (Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.110e-29
Identity = 72/219 (32.88%), Postives = 120/219 (54.79%), Query Frame = 3
Query:    6 DPVSKELFALSYDVVQKPYLKYFRFSADGDKSPDVEIH-LPVPTMMHDFAITENFVVIPDQQVVFKLQEM---ITGGSPVIYDKNKKSRFGILAKNAKDSNDIIWIESPDTFCFHLWNAWEEPETDEIVVIGSCMTPADSIFNECDESLKSVLSEIRLNLKTGESTRRQILSESDQVNLEAGMVNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGE 650
            DP++ E FA  Y  V  P+L YFRF + G K  DV I  +  P+ +HDFAIT+   +  + Q+  ++  +   + GGSPV  D  K  R G++ K A D +++ W E P     H  NAW+E + + +V+I   +   +      D  + +++ +++++L TG   R  I +     NL+  ++N   LGR +++ Y AI +P PK+SG  K+D+S G+
Sbjct:  291 DPITGETFAFRYGPVP-PFLTYFRFDSAGKKQRDVPIFSMTSPSFLHDFAITKRHAIFAEIQLGMRMNMLDLVLEGGSPVGTDNGKTPRLGVIPKYAGDESEMKWFEVPGFNIIHAINAWDEDDGNSVVLIAPNIMSIEHTLERMD-LVHALVEKVKIDLVTGIVRRHPISAR----NLDFAVINPAFLGRCSRYVYAAIGDPMPKISGVVKLDVSKGD 503          

HSP 2 Score: 20.4014 bits (41), Expect = 9.110e-29
Identity = 7/10 (70.00%), Postives = 7/10 (70.00%), Query Frame = 2
Query:  665 YGDNKYGGEP 694
            YG   YGGEP
Sbjct:  514 YGSGCYGGEP 523          
BLAST of FC919326 vs. ExPASy Swiss-Prot
Match: CCD1_PEA (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.725e-28
Identity = 80/228 (35.09%), Postives = 121/228 (53.07%), Query Frame = 3
Query:    6 DPVSKELFALSYDVVQKPYLKYFRFSADGDKSPDVEIHLPVPTMMHDFAITENFVVIPDQQVVFKLQEMITGGSPVI-YDKNKKSRFGILAKNAKDSNDIIWIESPDTFCFHLWNAWEEPETDEIVVIGSC------MTPADSIFNECDESLKSVLSEIRLNLKTGESTRRQILSESDQVNLEAGMVNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDL----SSGEVK 656
            DP + E+F   Y     PY+ Y   S DG     V I +  P MMHDFAITEN+ +  D  + F+ +EM+   + +  +D  KK+RFG+L + AKD   I W E P+ F FH  NAWE  E DEIV+I +C      +        E  ++  + L E+R N+KTGE++++++ + +    ++   VN +  GRK ++ Y    +   KV+G  K DL     SG+ K
Sbjct:  226 DPFTGEMFTFGYSHTA-PYVTYRVISKDGFMQDPVPITISDPVMMHDFAITENYSIFMDLPLYFRPKEMVKNKTLIFSFDSTKKARFGVLPRYAKDDKHIRWFELPNCFIFHNANAWE--EEDEIVLI-TCRLENPNLDVVGGAVKEKLDNFSNELYEMRFNMKTGEASQKKLSAST----VDFPRVNESYTGRKQRYVYGTTLDSIAKVTGIIKFDLHAEPDSGKTK 445          
BLAST of FC919326 vs. ExPASy Swiss-Prot
Match: CCD1_ARATH (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.405e-26
Identity = 77/218 (35.32%), Postives = 117/218 (53.67%), Query Frame = 3
Query:    6 DPVSKELFALSYDVVQKPYLKYFRFSADGDKSPDVEIHLPVPTMMHDFAITENFVVIPDQQVVFKLQEMITGGSPVI-YDKNKKSRFGILAKNAKDSNDIIWIESPDTFCFHLWNAWEEPETDEIVVIGSCM---TPADSIFNECDESLKSV---LSEIRLNLKTGESTRRQILSESDQVNLEAGMVNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDL 638
            DPV+ E+F   Y     PYL Y   S DG     V I +  P MMHDFAITE + +  D  + F+ +EM+     +  +D  KK+RFG+L + AKD   I W E P+ F FH  NAWE  E DE+V+I +C       D +  +  E L++    L E+R N+KTG ++++++ + +    ++   +N    G+K ++ Y  I +   KV+G  K DL
Sbjct:  226 DPVTGEMFTFGYSHTP-PYLTYRVISKDGIMHDPVPITISEPIMMHDFAITETYAIFMDLPMHFRPKEMVKEKKMIYSFDPTKKARFGVLPRYAKDELMIRWFELPNCFIFHNANAWE--EEDEVVLI-TCRLENPDLDMVSGKVKEKLENFGNELYEMRFNMKTGSASQKKLSASA----VDFPRINECYTGKKQRYVYGTILDSIAKVTGIIKFDL 435          
The following BLAST results are available for this feature:
BLAST of FC919326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CCD4_ARATH9.110e-2932.88Probable carotenoid cleavage dioxygenase 4, chloro... [more]
CCD1_PEA5.725e-2835.09Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD1_ARATH2.405e-2635.32Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC06055C07T7 PCR Citrus clementina cDNA clone C06055C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919326 ID=FC919326; Name=FC919326; organism=Citrus clementina; type=EST; length=696bp
GATTTGATCCCGTATCAAAGGAGCTTTTTGCTTTGAGTTATGATGTTGTT
CAAAAGCCTTATTTAAAATACTTTAGATTTTCTGCTGATGGAGACAAATC
ACCCGACGTAGAGATTCATCTGCCAGTGCCCACCATGATGCACGATTTCG
CTATCACTGAGAATTTTGTGGTGATCCCGGACCAACAAGTCGTTTTCAAG
CTCCAAGAAATGATAACGGGTGGCTCTCCGGTGATTTATGACAAGAACAA
GAAGTCCCGGTTCGGGATTCTTGCAAAGAATGCTAAAGATTCTAACGACA
TCATCTGGATTGAATCACCGGACACGTTCTGCTTTCACTTGTGGAACGCT
TGGGAGGAGCCGGAAACTGATGAAATTGTTGTCATTGGATCATGCATGAC
ACCTGCTGACTCAATTTTCAACGAGTGTGACGAGAGTCTGAAGAGTGTTT
TATCCGAAATTCGGCTCAATTTAAAGACTGGTGAGTCCACGCGCCGCCAG
ATTCTCTCGGAGTCTGATCAAGTGAACTTGGAGGCTGGGATGGTGAATCG
CAACAGCCTTGGTAGAAAAACTCAGTTCGCTTATCTAGCCATTGCGGAAC
CATGGCCTAAAGTCTCAGGTTTTGCTAAAGTGGATCTCTCTTCAGGAGAG
GTTAAAAGTATTTTTACGGCGATAATAAATATGGCGGCGAGCCATT
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