FC919326
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC919326 vs. ExPASy Swiss-Prot
Match: CCD4_ARATH (Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 9.110e-29 Identity = 72/219 (32.88%), Postives = 120/219 (54.79%), Query Frame = 3 Query: 6 DPVSKELFALSYDVVQKPYLKYFRFSADGDKSPDVEIH-LPVPTMMHDFAITENFVVIPDQQVVFKLQEM---ITGGSPVIYDKNKKSRFGILAKNAKDSNDIIWIESPDTFCFHLWNAWEEPETDEIVVIGSCMTPADSIFNECDESLKSVLSEIRLNLKTGESTRRQILSESDQVNLEAGMVNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGE 650 DP++ E FA Y V P+L YFRF + G K DV I + P+ +HDFAIT+ + + Q+ ++ + + GGSPV D K R G++ K A D +++ W E P H NAW+E + + +V+I + + D + +++ +++++L TG R I + NL+ ++N LGR +++ Y AI +P PK+SG K+D+S G+ Sbjct: 291 DPITGETFAFRYGPVP-PFLTYFRFDSAGKKQRDVPIFSMTSPSFLHDFAITKRHAIFAEIQLGMRMNMLDLVLEGGSPVGTDNGKTPRLGVIPKYAGDESEMKWFEVPGFNIIHAINAWDEDDGNSVVLIAPNIMSIEHTLERMD-LVHALVEKVKIDLVTGIVRRHPISAR----NLDFAVINPAFLGRCSRYVYAAIGDPMPKISGVVKLDVSKGD 503 HSP 2 Score: 20.4014 bits (41), Expect = 9.110e-29 Identity = 7/10 (70.00%), Postives = 7/10 (70.00%), Query Frame = 2 Query: 665 YGDNKYGGEP 694 YG YGGEP Sbjct: 514 YGSGCYGGEP 523
BLAST of FC919326 vs. ExPASy Swiss-Prot
Match: CCD1_PEA (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 5.725e-28 Identity = 80/228 (35.09%), Postives = 121/228 (53.07%), Query Frame = 3 Query: 6 DPVSKELFALSYDVVQKPYLKYFRFSADGDKSPDVEIHLPVPTMMHDFAITENFVVIPDQQVVFKLQEMITGGSPVI-YDKNKKSRFGILAKNAKDSNDIIWIESPDTFCFHLWNAWEEPETDEIVVIGSC------MTPADSIFNECDESLKSVLSEIRLNLKTGESTRRQILSESDQVNLEAGMVNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDL----SSGEVK 656 DP + E+F Y PY+ Y S DG V I + P MMHDFAITEN+ + D + F+ +EM+ + + +D KK+RFG+L + AKD I W E P+ F FH NAWE E DEIV+I +C + E ++ + L E+R N+KTGE++++++ + + ++ VN + GRK ++ Y + KV+G K DL SG+ K Sbjct: 226 DPFTGEMFTFGYSHTA-PYVTYRVISKDGFMQDPVPITISDPVMMHDFAITENYSIFMDLPLYFRPKEMVKNKTLIFSFDSTKKARFGVLPRYAKDDKHIRWFELPNCFIFHNANAWE--EEDEIVLI-TCRLENPNLDVVGGAVKEKLDNFSNELYEMRFNMKTGEASQKKLSAST----VDFPRVNESYTGRKQRYVYGTTLDSIAKVTGIIKFDLHAEPDSGKTK 445
BLAST of FC919326 vs. ExPASy Swiss-Prot
Match: CCD1_ARATH (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 PE=1 SV=2) HSP 1 Score: 119.013 bits (297), Expect = 2.405e-26 Identity = 77/218 (35.32%), Postives = 117/218 (53.67%), Query Frame = 3 Query: 6 DPVSKELFALSYDVVQKPYLKYFRFSADGDKSPDVEIHLPVPTMMHDFAITENFVVIPDQQVVFKLQEMITGGSPVI-YDKNKKSRFGILAKNAKDSNDIIWIESPDTFCFHLWNAWEEPETDEIVVIGSCM---TPADSIFNECDESLKSV---LSEIRLNLKTGESTRRQILSESDQVNLEAGMVNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDL 638 DPV+ E+F Y PYL Y S DG V I + P MMHDFAITE + + D + F+ +EM+ + +D KK+RFG+L + AKD I W E P+ F FH NAWE E DE+V+I +C D + + E L++ L E+R N+KTG ++++++ + + ++ +N G+K ++ Y I + KV+G K DL Sbjct: 226 DPVTGEMFTFGYSHTP-PYLTYRVISKDGIMHDPVPITISEPIMMHDFAITETYAIFMDLPMHFRPKEMVKEKKMIYSFDPTKKARFGVLPRYAKDELMIRWFELPNCFIFHNANAWE--EEDEVVLI-TCRLENPDLDMVSGKVKEKLENFGNELYEMRFNMKTGSASQKKLSASA----VDFPRINECYTGKKQRYVYGTILDSIAKVTGIIKFDL 435 The following BLAST results are available for this feature:
BLAST of FC919326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 13
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Sequences
The
following sequences are available for this feature:
EST sequence >FC919326 ID=FC919326; Name=FC919326; organism=Citrus clementina; type=EST; length=696bpback to top |