FC919336

Overview
NameFC919336
Unique NameFC919336
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length602
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME47_ARATH (Probable pectinesterase/pectinesterase inhibitor 47 OS=Arabidopsis thaliana GN=PME47 PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 7.095e-71
Identity = 121/191 (63.35%), Postives = 147/191 (76.96%), Query Frame = -1
Query:   33 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVL 602
            +A D+T RNTAGP  HQAVA+R+ +D S FYRCSFEGYQDTLYVHS R+FYRECDIYGT+DFIFGNAA + QNCNI+ARKP  N+ N +TA GRTDPNQ TGI I NC + AA DL     S  TFLGRPWK YSRTVYI++++  ++ P GW+EW+G   L+T+ Y EY N GPG+ T+ RV+W GY +L
Sbjct:  399 VAVDVTFRNTAGPEKHQAVAVRNNADGSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTIDFIFGNAAAIFQNCNIYARKPMANQKNAVTAHGRTDPNQKTGISIINCTIGAAPDLAADPKSTMTFLGRPWKPYSRTVYIQSYISDVVQPVGWLEWNGTTGLDTISYGEYDNFGPGADTSKRVQWSGYSLL 589          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 7.095e-71
Identity = 124/201 (61.69%), Postives = 155/201 (77.11%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPN-RTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            +ARDIT +NTAGP+ HQAVALR G+DLS FY C    YQDTLYVHS R+F+  C I GTVDFIFGNAA VLQNC+I ARKP + + N +TAQGR DPNQ+TGI+I   R+ A SDLKPVQ S  T+LGRPWK+YSRTV +++ +  +I+PAGW EW G+FALNTL+Y E+ N G G+ T+ RVKW+G+ V+TS ++   FT
Sbjct:  362 LARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFT 562          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME_DAUCA (Pectinesterase OS=Daucus carota PE=1 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 9.266e-71
Identity = 125/201 (62.19%), Postives = 158/201 (78.61%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPN-RTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            +ARDIT +NTAG   HQAVALR GSDLS FYRC    YQD+LYVHS R+F+  C I GTVDFIFGNAAVVLQ+C+I AR+P + + N +TAQGRTDPNQ+TGI+I   R+ A SDL+PVQSS  T+LGRPWK+YSRTV +++ + ++INPAGW  W G+FAL+TLYY EY NTG G++T+ RV W+G+ V+TS ++   FT
Sbjct:   97 LARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFT 297          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME1_SOLLC (Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9 PE=1 SV=5)

HSP 1 Score: 265.388 bits (677), Expect = 1.581e-70
Identity = 124/201 (61.69%), Postives = 151/201 (75.12%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPN-RTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            I +DI I+NTAGP   QAVALR G+D+SV  RC  + YQDTLY HSQR+FYR+  + GTVDFIFGNAAVV Q C + ARKP   + N +TAQGRTDPNQ+TG  I  C + A+SDL+PV     T+LGRPWK+YSRTV ++++L  LINPAGW EW GDFAL TLYY E+MN GPG+ T+ RVKW GYHV+T P++   FT
Sbjct:  322 ILQDICIQNTAGPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFT 522          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME59_ARATH (Probable pectinesterase/pectinesterase inhibitor 59 OS=Arabidopsis thaliana GN=PME59 PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 2.064e-70
Identity = 128/203 (63.05%), Postives = 153/203 (75.37%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEW--SGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            IA+ IT RNTAGP   QAVALRS SDLS+FY+CS EGYQDTL VHSQR+FYREC IYGTVDFIFGNAA V QNC I  R+P   + N +TAQGR DP Q+TGI IHN R+  A DLKPV  +VKT++GRPW ++SRTV ++T+LD++++P GW  W     F L+TL+YAEY NTGP SST  RV W+G+HVL   S  S FT
Sbjct:  312 IAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHSQRQFYRECYIYGTVDFIFGNAAAVFQNCLILPRRPLKGQANVITAQGRADPFQNTGISIHNSRILPAPDLKPVVGTVKTYMGRPWMKFSRTVVLQTYLDNVVSPVGWSPWIEGSVFGLDTLFYAEYKNTGPASSTRWRVSWKGFHVLGRASDASAFT 514          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME40_ARATH (Probable pectinesterase/pectinesterase inhibitor 40 OS=Arabidopsis thaliana GN=PME40 PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 2.064e-70
Identity = 121/201 (60.20%), Postives = 157/201 (78.11%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            IA+D++  N AGP  HQAVALRS SDLS +YRCSFE YQDT+YVHS ++FYRECDIYGTVDFIFG+A+VV QNC+++AR+P PN+    TAQGR +  + TGI I + R+ AA DL PVQ++ K +LGRPW+ YSRTV +K+F+D L++PAGW++W  DFAL TLYY EYMN GPGS+  NRV+W G+  + +  + SQF+
Sbjct:  296 IAKDLSFVNYAGPEKHQAVALRSSSDLSAYYRCSFESYQDTIYVHSHKQFYRECDIYGTVDFIFGDASVVFQNCSLYARRPNPNQKIIYTAQGRENSREPTGISIISSRILAAPDLIPVQANFKAYLGRPWQLYSRTVIMKSFIDDLVDPAGWLKWKDDFALETLYYGEYMNEGPGSNMTNRVQWPGFKRIETVEEASQFS 496          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 265.003 bits (676), Expect = 2.064e-70
Identity = 123/201 (61.19%), Postives = 157/201 (78.11%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPN-RTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            +ARDIT +NTAGP+ HQAVALR GSD S FY C    YQDTLYVHS R+F+ +C I GTVDFIFGNAAVVLQ+C+I AR+P + + N +TAQGRTDPNQ+TGI+I  CR+ A SDL+ V+ S  T+LGRPWK+YS+TV +++ +  +I P GW EW+G FALNTL Y EY NTG G+ TANRVKWRG+ V+T+ ++  ++T
Sbjct:  370 LARDITFQNTAGPSKHQAVALRVGSDFSAFYNCDMLAYQDTLYVHSNRQFFVKCLIAGTVDFIFGNAAVVLQDCDIHARRPNSGQKNMVTAQGRTDPNQNTGIVIQKCRIGATSDLQSVKGSFPTYLGRPWKEYSQTVIMQSAISDVIRPEGWSEWTGTFALNTLTYREYSNTGAGAGTANRVKWRGFKVITAAAEAQKYT 570          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME22_SOLLC (Pectinesterase 2.2 OS=Solanum lycopersicum GN=PME2.2 PE=3 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 2.064e-70
Identity = 123/201 (61.19%), Postives = 150/201 (74.63%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPN-RTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            I +DI I+NTAGP  HQAVALR G+D SV  RC  + YQDTLY HSQR+FYR+  + GT+DFIFGNAAVV Q C + ARKP   + N +TAQGRTDPNQ+TG  I  C + A+SDL+PV     T+LGRPWK+YSRTV ++++L  LINPAGW EW GDFAL TLYY E+MN GPG+ T+ RVKW GYH +T P++   FT
Sbjct:  326 ILQDICIQNTAGPAKHQAVALRVGADKSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTIDFIFGNAAVVFQKCKLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKKYSRTVVMESYLGGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHCITDPAEAMPFT 526          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME1_FICAW (Pectinesterase/pectinesterase inhibitor OS=Ficus awkeotsang PE=1 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 2.696e-70
Identity = 121/201 (60.20%), Postives = 155/201 (77.11%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            IA+DI  +NTAGP  +QAVALR G+D +V  RC  + YQDTLY H+ R+FYR+ +I GTVDFIFGNAAVV QNCN+  RK    + NT+TAQGRTDPNQ+TG  I NC + A++DL+PV+ + K++LGRPWK+YSRTV +++++  +I+PAGW+EW  DFAL TL+Y EY N GPGS T+ RVKW GYHV+TSP    QFT
Sbjct:  321 IAQDICFQNTAGPEKYQAVALRIGADETVINRCRIDAYQDTLYPHNYRQFYRDRNITGTVDFIFGNAAVVFQNCNLIPRKQMKGQENTITAQGRTDPNQNTGTSIQNCEIFASADLEPVEDTFKSYLGRPWKEYSRTVVMESYISDVIDPAGWLEWDRDFALKTLFYGEYRNGGPGSGTSERVKWPGYHVITSPEVAEQFT 521          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME3_SOLLC (Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 PE=3 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 3.521e-70
Identity = 123/201 (61.19%), Postives = 152/201 (75.62%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPNRT-NTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            I +DI I+NTAGP   QAVALR G+D+SV  RC  + YQDTLY HSQR+FYR+  + GTVDFIFGNAAVV Q C I ARKP  R  N +TAQGRTDPNQ+TG  I  C + A+ DL+PV +  KT+LGRPWK++SRTV ++++LD  I+P+GW EW GDFAL TLYY E+MN GPG+ T+ RVKW GYHV+T P++   FT
Sbjct:  320 ILQDICIQNTAGPEKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQIVARKPNKRQKNMVTAQGRTDPNQATGTSIQFCDIIASPDLEPVMNEYKTYLGRPWKKHSRTVVMQSYLDGHIDPSGWFEWRGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPNEAMPFT 520          
The following BLAST results are available for this feature:
BLAST of FC919336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
PME47_ARATH7.095e-7163.35Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME3_CITSI7.095e-7161.69Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME_DAUCA9.266e-7162.19Pectinesterase OS=Daucus carota PE=1 SV=1[more]
PME1_SOLLC1.581e-7061.69Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9... [more]
PME59_ARATH2.064e-7063.05Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME40_ARATH2.064e-7060.20Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME3_ARATH2.064e-7061.19Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
PME22_SOLLC2.064e-7061.19Pectinesterase 2.2 OS=Solanum lycopersicum GN=PME2... [more]
PME1_FICAW2.696e-7060.20Pectinesterase/pectinesterase inhibitor OS=Ficus a... [more]
PME3_SOLLC3.521e-7061.19Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 P... [more]

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Properties
Property NameValue
Genbank descriptionC16000A09SK PCR Citrus clementina cDNA clone C16000A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919336 ID=FC919336; Name=FC919336; organism=Citrus clementina; type=EST; length=602bp
TCGGTGAACTGGCTAACCTGGGACGGACTGGTAAGAACGTGATAGCCACG
CCACTTGACTCTGTTAGCAGTTGAAGAACCCGGGCCAGTGTTCATATACT
CAGCATAATACAGTGTATTCAAAGCAAAATCACCACTCCATTCCATCCAT
CCAGCGGGGTTTATCAAGCTGTCAAGGAAGGTCTTGATATAAACGGTTCG
CGAGTACTGCTTCCAGGGCCTCCCAAGGAACGTCTTAACGGAGCTTTGAA
CAGGCTTCAAGTCGGAAGCAGCAGTGACCCTACAGTTGTGAATAATGATT
CCAGTGCTCTGGTTAGGGTCGGTTCTGCCTTGTGCGGTGAGAGTGTTGGT
CCTGTTGGGGGGTTTGCGCGCAAATATGTTGCAGTTTTGTAACACAACCG
CAGCGTTACCAAATATGAAATCCACTGTCCCATAAATGTCACACTCTCTG
TAGAATCGACGCTGTGAATGAACGTAGAGGGTGTCCTGGTATCCTTCAAA
GCTGCATCTGTAGAAAACTGAGAGATCCGACCCGGAACGCAGTGCCACCG
CCTGGTGATTGTTTGGACCCGCAGTGTTGCGGATTGTTATGTCACGAGCA
AT
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