FC919336

Overview
NameFC919336
Unique NameFC919336
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length602
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC919336_ssr142 microsatellite FC919336_ssr142:142..153. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4178 contig Ccv1_Contig4178:906..1507. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME25_ARATH (Probable pectinesterase/pectinesterase inhibitor 25 OS=Arabidopsis thaliana GN=PME25 PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 3.521e-70
Identity = 119/191 (62.30%), Postives = 148/191 (77.49%), Query Frame = -1
Query:   33 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVL 602
            +A D+T RNTAGP  HQAVALR+ ++ S FYRCSFEGYQDTLYVHS R+FYRECDIYGTVDFIFGNAA + QNCNI+ARKP   + N +TA GR DPNQ+TGI I NC + AA DL     S  TFLGRPWK YSRTV++++++  ++ P GW+EW+G   L+T+YY EY N GPG++T  RV+W GY++L
Sbjct:  394 MAVDVTFRNTAGPEKHQAVALRNNAEGSSFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAIFQNCNIYARKPMAKQKNAITAHGRLDPNQNTGISIINCTIKAAPDLAAEPKSAMTFLGRPWKPYSRTVFMQSYISDIVQPVGWLEWNGTIGLDTIYYGEYSNFGPGANTNQRVQWLGYNLL 584          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME21_SOLLC (Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2.1 PE=2 SV=2)

HSP 1 Score: 262.692 bits (670), Expect = 1.024e-69
Identity = 122/201 (60.70%), Postives = 150/201 (74.63%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPN-RTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            I +DI I+NTAGP  HQAVALR G+D SV  RC  + YQDTLY HSQR+FYR+  + GT+DFIFGNAAVV Q C + ARKP   + N +TAQGRTDPNQ+TG  I  C + A+ DLKPV     T+LGRPWK+YSRTV ++++L  LI+P+GW EW GDFAL TLYY E+MN GPG+ T+ RVKW GYHV+T P++   FT
Sbjct:  326 ILQDICIQNTAGPAKHQAVALRVGADKSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTIDFIFGNAAVVFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCDIIASPDLKPVVKEFPTYLGRPWKKYSRTVVMESYLGGLIDPSGWAEWHGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAEAMSFT 526          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME36_ARATH (Probable pectinesterase/pectinesterase inhibitor 36 OS=Arabidopsis thaliana GN=PME36 PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 1.747e-69
Identity = 120/200 (60.00%), Postives = 154/200 (77.00%), Query Frame = -1
Query:    3 ARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 599
            ARDIT  NTAGP+ HQAVALR  SDLS+FYRCSF+GYQDTL+ HS R+FYR+  IYGT+DFIFG+AA V QNC+IF R+P  ++ N +TAQGR DP+ ++GI I + R+ AA + + V+   K++LGRPWK+YSRTV++KT +D LI+P GW EWSG +AL+TLYY E+MNTG G+ T  RV W G+HVL    + S FT
Sbjct:  298 ARDITFENTAGPHKHQAVALRVSSDLSLFYRCSFKGYQDTLFTHSLRQFYRDRHIYGTIDFIFGDAAAVFQNCDIFVRRPMDHQGNMITAQGRDDPHTNSGISIQHSRIRAAPEFEAVKGRFKSYLGRPWKKYSRTVFLKTDIDELIDPRGWREWSGSYALSTLYYGEFMNTGAGAGTGRRVNWPGFHVLRGEEEASPFT 497          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 261.922 bits (668), Expect = 1.747e-69
Identity = 122/201 (60.70%), Postives = 155/201 (77.11%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPN-RTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            +ARDIT +NTAGP+ HQAVALR GSD S FY+C    YQDTLYVHS R+F+ +C I GTVDFIFGNAA VLQ+C+I AR+P + + N +TAQGR+DPNQ+TGI+I NCR+   SDL  V+ +  T+LGRPWK+YSRTV +++ +  +I P GW EWSG FAL+TL Y EY+N G G+ TANRVKW+GY V+TS ++   FT
Sbjct:  365 LARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITGTVDFIFGNAAAVLQDCDINARRPNSGQKNMVTAQGRSDPNQNTGIVIQNCRIGGTSDLLAVKGTFPTYLGRPWKEYSRTVIMQSDISDVIRPEGWHEWSGSFALDTLTYREYLNRGGGAGTANRVKWKGYKVITSDTEAQPFT 565          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PMEU1_SOLLC (Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 2.282e-69
Identity = 120/201 (59.70%), Postives = 156/201 (77.61%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPN-RTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            +ARDIT +NTAG + HQAVAL  GSDLS FYRC    YQDTLYVHS R+F+ +C + GTVDFIFGN A V Q+C+I AR+P + + N +TAQGRTDPNQ+TGI+I  CR+ A SDL+PVQ S  T+LGRPWK+YSRTV +++ +  +I PAGW EW+G+FAL+TL+Y EY NTG G+ T+ RVKW+G+ V+TS ++   +T
Sbjct:  361 LARDITFQNTAGASKHQAVALCVGSDLSAFYRCDMLAYQDTLYVHSNRQFFVQCLVAGTVDFIFGNGAAVFQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKCRIGATSDLRPVQKSFPTYLGRPWKEYSRTVIMQSSITDVIQPAGWHEWNGNFALDTLFYGEYANTGAGAPTSGRVKWKGHKVITSSTEAQAYT 561          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME39_ARATH (Probable pectinesterase/pectinesterase inhibitor 39 OS=Arabidopsis thaliana GN=PME39 PE=2 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 3.893e-69
Identity = 123/201 (61.19%), Postives = 152/201 (75.62%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            IA+DI+  N+AGP   QAVA RSGSD S FYRC F+GYQDTLYVHS ++FYRECDIYGT+DFIFGNAAVV QN +++ARKP P      TAQ R   +Q TGI I NCR+ AA DL PV+ + K +LGRPW++YSRTV IK+F+D LI+PAGW+E   DFAL TLYY EYMN GPG++ A RV W G+  + + ++ +QFT
Sbjct:  310 IAKDISFVNSAGPAKAQAVAFRSGSDHSAFYRCEFDGYQDTLYVHSAKQFYRECDIYGTIDFIFGNAAVVFQNSSLYARKPNPGHKIAFTAQSRNQSDQPTGISILNCRILAAPDLIPVKENFKAYLGRPWRKYSRTVIIKSFIDDLIHPAGWLEGKKDFALETLYYGEYMNEGPGANMAKRVTWPGFRRIENQTEATQFT 510          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME60_ARATH (Probable pectinesterase/pectinesterase inhibitor 60 OS=Arabidopsis thaliana GN=PME60 PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 6.640e-69
Identity = 127/203 (62.56%), Postives = 152/203 (74.88%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWS--GDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            IA+ I  +NTAGP   QAVALRS SDLS+FYRCS EGYQDTL VHSQR+FYREC IYGTVDFIFGNAAVV QNC I  R P   + N +TAQGRTD  Q+TGI IHN  +  A DLKPV  SVKT++GRPW  YSRTV +KT++DS+++P GW  W+    + L+TL+YAEY N GP SST  RV+W+G+HVL+  S  S F+
Sbjct:  316 IAKGIAFQNTAGPAKGQAVALRSSSDLSIFYRCSIEGYQDTLMVHSQRQFYRECYIYGTVDFIFGNAAVVFQNCIILPRLPLKGQANVITAQGRTDLFQNTGISIHNSIIIPAPDLKPVVRSVKTYMGRPWMMYSRTVVLKTYIDSVVSPVGWSPWTKGSTYGLDTLFYAEYKNIGPASSTRWRVRWKGFHVLSKASDASAFS 518          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME61_ARATH (Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 8.672e-69
Identity = 122/201 (60.70%), Postives = 150/201 (74.63%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPNRTN-TLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            I RD+T  N AGP  HQAVALR G D +V YRC+  GYQD LYVHS R+F+REC+IYGTVDFIFGNAAV+LQ+CNI+ARKP  +   T+TAQ R DPNQ+TGI IH C++ A  DL+  + S  T+LGRPWK YSR VY+ + +   I+P GW+EW+G FAL++LYY EYMN G GS    RVKW GYHV+TS  + S+FT
Sbjct:  363 IVRDMTFENYAGPAKHQAVALRVGGDHAVVYRCNIIGYQDALYVHSNRQFFRECEIYGTVDFIFGNAAVILQSCNIYARKPMAQQKITITAQNRKDPNQNTGISIHACKLLATPDLEASKGSYPTYLGRPWKLYSRVVYMMSDMGDHIDPRGWLEWNGPFALDSLYYGEYMNKGLGSGIGQRVKWPGYHVITSTVEASKFT 563          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME44_ARATH (Probable pectinesterase/pectinesterase inhibitor 44 OS=Arabidopsis thaliana GN=PME44 PE=2 SV=2)

HSP 1 Score: 257.684 bits (657), Expect = 3.296e-68
Identity = 117/201 (58.21%), Postives = 150/201 (74.63%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            +ARDIT +NTAGP  HQAVALRS SDLSVF+RC+  GYQDTLY H+ R+FYREC I GTVDFIFG+  VV QNC I A++  PN+ NT+TAQGR D NQ +G  I    ++A +DL P  ++ +T+LGRPWK YSRTV+I+  +  ++ P GW+EW+ DFAL+TL+Y E+MN GPGS  ++RVKW GYHV  +  Q + FT
Sbjct:  301 LARDITFQNTAGPEKHQAVALRSDSDLSVFFRCAMRGYQDTLYTHTMRQFYRECTITGTVDFIFGDGTVVFQNCQILAKRGLPNQKNTITAQGRKDVNQPSGFSIQFSNISADADLVPYLNTTRTYLGRPWKLYSRTVFIRNNMSDVVRPEGWLEWNADFALDTLFYGEFMNYGPGSGLSSRVKWPGYHVFNNSDQANNFT 501          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME32_ARATH (Probable pectinesterase/pectinesterase inhibitor 32 OS=Arabidopsis thaliana GN=PME32 PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.252e-67
Identity = 117/201 (58.21%), Postives = 151/201 (75.12%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            IARDIT +NTAGP  HQAVA+RS +DL VFYRC+  GYQDTLY HS R+F+REC I GTVDFIFG+A  V Q+C I A++  PN+ N++TAQGR DPN+ TG  I    + A +DL    ++  T+LGRPWK YSRTV+++ ++   INP GW+EW+G+FAL+TLYY EYMN+GPG+S   RVKW GYHVL + ++ + FT
Sbjct:  303 IARDITFQNTAGPEKHQAVAIRSDTDLGVFYRCAMRGYQDTLYAHSMRQFFRECIITGTVDFIFGDATAVFQSCQIKAKQGLPNQKNSITAQGRKDPNEPTGFTIQFSNIAADTDLLLNLNTTATYLGRPWKLYSRTVFMQNYMSDAINPVGWLEWNGNFALDTLYYGEYMNSGPGASLDRRVKWPGYHVLNTSAEANNFT 503          
The following BLAST results are available for this feature:
BLAST of FC919336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
PME25_ARATH3.521e-7062.30Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME21_SOLLC1.024e-6960.70Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2... [more]
PME36_ARATH1.747e-6960.00Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME2_ARATH1.747e-6960.70Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
PMEU1_SOLLC2.282e-6959.70Pectinesterase/pectinesterase inhibitor U1 OS=Sola... [more]
PME39_ARATH3.893e-6961.19Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME60_ARATH6.640e-6962.56Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME61_ARATH8.672e-6960.70Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME44_ARATH3.296e-6858.21Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME32_ARATH1.252e-6758.21Probable pectinesterase/pectinesterase inhibitor 3... [more]

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Properties
Property NameValue
Genbank descriptionC16000A09SK PCR Citrus clementina cDNA clone C16000A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919336 ID=FC919336; Name=FC919336; organism=Citrus clementina; type=EST; length=602bp
TCGGTGAACTGGCTAACCTGGGACGGACTGGTAAGAACGTGATAGCCACG
CCACTTGACTCTGTTAGCAGTTGAAGAACCCGGGCCAGTGTTCATATACT
CAGCATAATACAGTGTATTCAAAGCAAAATCACCACTCCATTCCATCCAT
CCAGCGGGGTTTATCAAGCTGTCAAGGAAGGTCTTGATATAAACGGTTCG
CGAGTACTGCTTCCAGGGCCTCCCAAGGAACGTCTTAACGGAGCTTTGAA
CAGGCTTCAAGTCGGAAGCAGCAGTGACCCTACAGTTGTGAATAATGATT
CCAGTGCTCTGGTTAGGGTCGGTTCTGCCTTGTGCGGTGAGAGTGTTGGT
CCTGTTGGGGGGTTTGCGCGCAAATATGTTGCAGTTTTGTAACACAACCG
CAGCGTTACCAAATATGAAATCCACTGTCCCATAAATGTCACACTCTCTG
TAGAATCGACGCTGTGAATGAACGTAGAGGGTGTCCTGGTATCCTTCAAA
GCTGCATCTGTAGAAAACTGAGAGATCCGACCCGGAACGCAGTGCCACCG
CCTGGTGATTGTTTGGACCCGCAGTGTTGCGGATTGTTATGTCACGAGCA
AT
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