FC919336

Overview
NameFC919336
Unique NameFC919336
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length602
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC919336_ssr142 microsatellite FC919336_ssr142:142..153. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4178 contig Ccv1_Contig4178:906..1507. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME18_ARATH (Pectinesterase/pectinesterase inhibitor 18 OS=Arabidopsis thaliana GN=PME18 PE=1 SV=2)

HSP 1 Score: 254.218 bits (648), Expect = 3.644e-67
Identity = 119/201 (59.20%), Postives = 150/201 (74.63%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            +A+DI  +NTAGP  HQAVALR  +D +V  RC  + YQDTLY H+ R+FYR+  I GTVDFIFGN+AVV QNC+I AR P   + N LTAQGR D NQ+T I I  C++TA+SDL PV+ SVKTFLGRPWK YSRTV +++F+D+ I+PAGW  W G+FAL+TLYY EY NTGPG+ T+ RV W+G+ V+    +  QFT
Sbjct:  335 MAQDIWFQNTAGPAKHQAVALRVSADQTVINRCRIDAYQDTLYTHTLRQFYRDSYITGTVDFIFGNSAVVFQNCDIVARNPGAGQKNMLTAQGREDQNQNTAISIQKCKITASSDLAPVKGSVKTFLGRPWKLYSRTVIMQSFIDNHIDPAGWFPWDGEFALSTLYYGEYANTGPGADTSKRVNWKGFKVIKDSKEAEQFT 535          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME35_ARATH (Probable pectinesterase/pectinesterase inhibitor 35 OS=Arabidopsis thaliana GN=PME35 PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 4.759e-67
Identity = 121/200 (60.50%), Postives = 150/200 (75.00%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            IARDIT  N+AGPN+ QAVALR GSD SV YRCS +GYQD+LY  S+R+FYRE DI GTVDFIFGN+AVV Q+CN+ +RK  +  N +TAQGR+DPNQ+TGI IHNCR+T          S KT+LGRPWKQYSRTV +++F+D  I+P+GW  WS +FAL TLYY E+ N+GPGSS + RV W GYH   + ++   FT
Sbjct:  316 IARDITFVNSAGPNSEQAVALRVGSDRSVVYRCSIDGYQDSLYTLSKRQFYRETDITGTVDFIFGNSAVVFQSCNLVSRKGSSDQNYVTAQGRSDPNQNTGISIHNCRIT---------GSTKTYLGRPWKQYSRTVVMQSFIDGSIHPSGWSPWSSNFALKTLYYGEFGNSGPGSSVSGRVSWAGYHPALTLTEAQGFT 506          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME33_ARATH (Probable pectinesterase/pectinesterase inhibitor 33 OS=Arabidopsis thaliana GN=PME33 PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 4.759e-67
Identity = 121/203 (59.61%), Postives = 153/203 (75.37%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEW--SGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            +A+D+T  NTAGP   QAVA+RS SDLSVFYR    G+QDTLY+HSQR+F+REC I GT+DFIFGNAAVV QNC I  R+P   + N +TAQGR DP Q+TGI IH+ R+ AASDLKPV  + KT+LGRPW+ YSR   +KT++D+ I+P GW  W    +FALNT++Y EY N GPGSST  RV+W+G+H +TS +  S+FT
Sbjct:  370 VAKDMTFINTAGPLRGQAVAVRSSSDLSVFYRVGIHGFQDTLYIHSQRQFFRECYISGTIDFIFGNAAVVFQNCMILVRRPLHGQANIITAQGRGDPFQNTGITIHSSRIIAASDLKPVIRAYKTYLGRPWQAYSRVTIMKTYIDNSISPLGWSPWLRGSNFALNTVFYGEYKNFGPGSSTRWRVRWKGFHAITSTAVASRFT 572          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME6_ARATH (Probable pectinesterase/pectinesterase inhibitor 6 OS=Arabidopsis thaliana GN=PME6 PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 1.808e-66
Identity = 117/201 (58.21%), Postives = 151/201 (75.12%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            IA+ IT  NTAGP  HQAVALRS SD SVFY CSF+GYQDTLY+HS R+F R C+IYGTVDFIFG+A  +LQNCNI+ARKP   + NT+TAQ R +P+++TG +I +  V  AS+         T+LGRPW+ +SRTV++K  L +L++PAGW+ WSG FAL+TLYY EY NTG G+S + RVKW GYHV+ + ++  +FT
Sbjct:  341 IAQGITFENTAGPEKHQAVALRSSSDFSVFYACSFKGYQDTLYLHSSRQFLRNCNIYGTVDFIFGDATAILQNCNIYARKPMSGQKNTITAQSRKEPDETTGFVIQSSTVATASE---------TYLGRPWRSHSRTVFMKCNLGALVSPAGWLPWSGSFALSTLYYGEYGNTGAGASVSGRVKWPGYHVIKTVTEAEKFT 532          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME58_ARATH (Probable pectinesterase/pectinesterase inhibitor 58 OS=Arabidopsis thaliana GN=PME58 PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.172e-65
Identity = 116/200 (58.00%), Postives = 149/200 (74.50%), Query Frame = -1
Query:    3 ARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 599
            A++I   NTAGP  HQAVALR  +DL+VFY C  +GYQDTLYVHS R+F+R+C + GTVDFIFG+  VVLQNCNI  RKP  +++  +TAQGR+D  +STG+++ NC +T      PV+S  K +LGRPWK++SRT+ + T +D +I+PAGW+ W+GDFALNTLYYAEY N GPGS+ A RVKW G   L SP Q  +FT
Sbjct:  350 AKNIGFENTAGPEGHQAVALRVSADLAVFYNCQIDGYQDTLYVHSHRQFFRDCTVSGTVDFIFGDGIVVLQNCNIVVRKPMKSQSCMITAQGRSDKRESTGLVLQNCHITGEPAYIPVKSINKAYLGRPWKEFSRTIIMGTTIDDVIDPAGWLPWNGDFALNTLYYAEYENNGPGSNQAQRVKWPGIKKL-SPKQALRFT 548          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME22_ARATH (Putative pectinesterase/pectinesterase inhibitor 22 OS=Arabidopsis thaliana GN=PME22 PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 3.410e-65
Identity = 117/198 (59.09%), Postives = 142/198 (71.72%), Query Frame = -1
Query:   12 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVS 602
            IA+DIT RNTAGP N QAVALR  SD S FYRCS EGYQDTLY HS R+FYR+C+IYGT+DFIFGN A VLQNC I+ R P P +  T+TAQGR  PNQ+TG +I N  V A            T+LGRPWK YSRTVY+ T++  L+ P GW+EW G+FAL+TL+Y EY N GPG  ++ RVKW GYH++   + +S
Sbjct:  329 IAKDITFRNTAGPQNRQAVALRVDSDQSAFYRCSVEGYQDTLYAHSLRQFYRDCEIYGTIDFIFGNGAAVLQNCKIYTRVPLPLQKVTITAQGRKSPNQNTGFVIQNSYVLATQ---------PTYLGRPWKLYSRTVYMNTYMSQLVQPRGWLEWFGNFALDTLWYGEYNNIGPGWRSSGRVKWPGYHIMDKRTALS 517          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME46_ARATH (Probable pectinesterase/pectinesterase inhibitor 46 OS=Arabidopsis thaliana GN=PME46 PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 9.923e-65
Identity = 113/201 (56.22%), Postives = 148/201 (73.63%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            +ARD+   NTAGP  HQAVAL   +DLSVFY+C+ + +QDT+Y H+QR+FYR+C I GTVDFIFGNAAVV Q C I  R+P   + NT+TAQGR DPNQ+TGI IHNC +    +L  +Q    TFLGRPWK +S TV +K+F+D  INP GW+ W+GD A +T++YAEY+N+GPG+ST NRVKW+G     +  + ++FT
Sbjct:  346 MARDMGFINTAGPAKHQAVALMVSADLSVFYKCTMDAFQDTMYAHAQRQFYRDCVILGTVDFIFGNAAVVFQKCEILPRRPMKGQQNTITAQGRKDPNQNTGISIHNCTIKPLDNLTDIQ----TFLGRPWKDFSTTVIMKSFMDKFINPKGWLPWTGDTAPDTIFYAEYLNSGPGASTKNRVKWQGLKTSLTKKEANKFT 542          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME16_ARATH (Probable pectinesterase/pectinesterase inhibitor 16 OS=Arabidopsis thaliana GN=PME16 PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.433e-63
Identity = 117/201 (58.21%), Postives = 148/201 (73.63%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            IARD+T  N AGP + QAVALR G+D SV +RCS EGYQD+LY HS+R+FYRE DI GTVDFIFGN+AVV Q+CNI ARKP P + N +TAQGR++P Q+TGI I NCR+TA S          T+LGRPWK+YSRTV +++F+   I+P+GW  WSG F L +L+Y EY N+GPGSS + RVKW G H   + ++  +FT
Sbjct:  303 IARDMTFVNNAGPKSEQAVALRVGADKSVVHRCSVEGYQDSLYTHSKRQFYRETDITGTVDFIFGNSAVVFQSCNIAARKPLPGQRNFVTAQGRSNPGQNTGIAIQNCRITAES---------MTYLGRPWKEYSRTVVMQSFIGGSIHPSGWSPWSGGFGLKSLFYGEYGNSGPGSSVSGRVKWSGCHPSLTVTEAEKFT 494          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME23_ARATH (Probable pectinesterase/pectinesterase inhibitor 23 OS=Arabidopsis thaliana GN=PME23 PE=2 SV=3)

HSP 1 Score: 237.654 bits (605), Expect = 3.529e-62
Identity = 109/191 (57.07%), Postives = 143/191 (74.87%), Query Frame = -1
Query:   30 ARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLT 599
            A++I I NTAGP   QAVALR  +D +VF+ C  +G+QDTLYVHS R+FYR+C + GTVDFIFG+A  +LQNC I  RKP   +T  +TAQGR++  +STG+++H C +T      P++S  K +LGRPWK++SRT+ +KT +D +I+PAGW+ WSGDFAL TLYYAE+MNTGPGS+ A RVKW G   LT
Sbjct:  348 AKNIGIENTAGPEGGQAVALRVSADYAVFHSCQIDGHQDTLYVHSHRQFYRDCTVSGTVDFIFGDAKCILQNCKIVVRKPNKGQTCMVTAQGRSNVRESTGLVLHGCHITGDPAYIPMKSVNKAYLGRPWKEFSRTIIMKTTIDDVIDPAGWLPWSGDFALKTLYYAEHMNTGPGSNQAQRVKWPGIKKLT 538          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME24_ARATH (Putative pectinesterase/pectinesterase inhibitor 24 OS=Arabidopsis thaliana GN=PME24 PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 4.609e-62
Identity = 113/201 (56.22%), Postives = 145/201 (72.14%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            +ARD+   NTAGP+ HQAVAL   +DL+ FYRC+   YQDTLYVH+QR+FYREC I GTVDFIFGN+A VLQ+C I  R+P   + NT+TAQGRTDPN +TGI IH C ++   DL    + V TFLGRPWK +S TV + ++L   I+  GW+ W+GD A +T++Y EY NTGPG+ST NRVKW+G   L S  + ++FT
Sbjct:  344 MARDMGFINTAGPSKHQAVALMVSADLTAFYRCTMNAYQDTLYVHAQRQFYRECTIIGTVDFIFGNSASVLQSCRILPRRPMKGQQNTITAQGRTDPNMNTGISIHRCNISPLGDL----TDVMTFLGRPWKNFSTTVIMDSYLHGFIDRKGWLPWTGDSAPDTIFYGEYKNTGPGASTKNRVKWKGLRFL-STKEANRFT 539          
The following BLAST results are available for this feature:
BLAST of FC919336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
PME18_ARATH3.644e-6759.20Pectinesterase/pectinesterase inhibitor 18 OS=Arab... [more]
PME35_ARATH4.759e-6760.50Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME33_ARATH4.759e-6759.61Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME6_ARATH1.808e-6658.21Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME58_ARATH1.172e-6558.00Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME22_ARATH3.410e-6559.09Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME46_ARATH9.923e-6556.22Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME16_ARATH1.433e-6358.21Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME23_ARATH3.529e-6257.07Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME24_ARATH4.609e-6256.22Putative pectinesterase/pectinesterase inhibitor 2... [more]

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Properties
Property NameValue
Genbank descriptionC16000A09SK PCR Citrus clementina cDNA clone C16000A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919336 ID=FC919336; Name=FC919336; organism=Citrus clementina; type=EST; length=602bp
TCGGTGAACTGGCTAACCTGGGACGGACTGGTAAGAACGTGATAGCCACG
CCACTTGACTCTGTTAGCAGTTGAAGAACCCGGGCCAGTGTTCATATACT
CAGCATAATACAGTGTATTCAAAGCAAAATCACCACTCCATTCCATCCAT
CCAGCGGGGTTTATCAAGCTGTCAAGGAAGGTCTTGATATAAACGGTTCG
CGAGTACTGCTTCCAGGGCCTCCCAAGGAACGTCTTAACGGAGCTTTGAA
CAGGCTTCAAGTCGGAAGCAGCAGTGACCCTACAGTTGTGAATAATGATT
CCAGTGCTCTGGTTAGGGTCGGTTCTGCCTTGTGCGGTGAGAGTGTTGGT
CCTGTTGGGGGGTTTGCGCGCAAATATGTTGCAGTTTTGTAACACAACCG
CAGCGTTACCAAATATGAAATCCACTGTCCCATAAATGTCACACTCTCTG
TAGAATCGACGCTGTGAATGAACGTAGAGGGTGTCCTGGTATCCTTCAAA
GCTGCATCTGTAGAAAACTGAGAGATCCGACCCGGAACGCAGTGCCACCG
CCTGGTGATTGTTTGGACCCGCAGTGTTGCGGATTGTTATGTCACGAGCA
AT
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