FC919336

Overview
NameFC919336
Unique NameFC919336
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length602
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME45_ARATH (Putative pectinesterase/pectinesterase inhibitor 45 OS=Arabidopsis thaliana GN=PME45 PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 6.656e-61
Identity = 111/202 (54.95%), Postives = 146/202 (72.28%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEW-SGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            +A+ +  RNTAGP  HQAVA+R  SD SVF  C FEGYQDTLY ++ R++YR C I GTVDFIFG+AA + QNC+IF RK  P + NT+TAQGR D  Q+TG +IHNC V    DLKPV++  K++LGRPWK +SRTV +++ ++ +I+P GW+ W   DFA++TL YAEY N GP  +TA RVKW G+ VL +  +  +FT
Sbjct:  385 MAQSMGFRNTAGPEGHQAVAIRVQSDRSVFLNCRFEGYQDTLYAYTHRQYYRSCVIIGTVDFIFGDAAAIFQNCDIFIRKGLPGQKNTVTAQGRVDKFQTTGFVIHNCTVAPNEDLKPVKAQFKSYLGRPWKPHSRTVVMESTIEDVIDPVGWLRWQETDFAIDTLSYAEYKNDGPSGATAARVKWPGFRVL-NKEEAMKFT 585          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME12_ARATH (Probable pectinesterase/pectinesterase inhibitor 12 OS=Arabidopsis thaliana GN=PME12 PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 6.656e-61
Identity = 104/191 (54.45%), Postives = 138/191 (72.25%), Query Frame = -1
Query:   33 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVL 602
            +ARDI I NTAGP  HQAVALR  +D    YRC  +GYQDTLY HS R+FYRECDIYGT+D+IFGNAAVV Q CNI ++ P P +   +TAQ R   ++ TGI + NC + A+ DL    + VK++LGRPW+++SRTV +++++D  I+ +GW +W+G  AL+TLYY EY N GPGS T  RV W G+H++
Sbjct:  326 LARDIMITNTAGPEKHQAVALRVNADFVALYRCVIDGYQDTLYTHSFRQFYRECDIYGTIDYIFGNAAVVFQGCNIVSKLPMPGQFTVITAQSRDTQDEDTGISMQNCSILASEDLFNSSNKVKSYLGRPWREFSRTVVMESYIDEFIDGSGWSKWNGGEALDTLYYGEYNNNGPGSETVKRVNWPGFHIM 516          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME13_ARATH (Probable pectinesterase/pectinesterase inhibitor 13 OS=Arabidopsis thaliana GN=PME13 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 8.693e-61
Identity = 104/192 (54.17%), Postives = 141/192 (73.44%), Query Frame = -1
Query:   33 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEW-SGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVL 602
            +A+ +  RNTAG   HQAVA+R  SD S+F  C FEGYQDTLY ++ R++YR C I GT+DFIFG+AA + QNCNIF RK  P + NT+TAQGR D  Q+TG ++HNC++ A  DLKPV+   K++LGRPWK YSRT+ +++ ++++I+P GW+ W   DFA++TLYYAEY N G    T +RVKW G+ V+
Sbjct:  390 MAQSMGFRNTAGSEGHQAVAIRVQSDRSIFLNCRFEGYQDTLYAYTHRQYYRSCVIVGTIDFIFGDAAAIFQNCNIFIRKGLPGQKNTVTAQGRVDKFQTTGFVVHNCKIAANEDLKPVKEEYKSYLGRPWKNYSRTIIMESKIENVIDPVGWLRWQETDFAIDTLYYAEYNNKGSSGDTTSRVKWPGFKVI 581          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME3_PHAVU (Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.796e-59
Identity = 109/202 (53.96%), Postives = 142/202 (70.30%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDF-ALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            IA+DI   N AG + HQAVALRSGSD SVF+RCSF+G+QDTLY HS R+FYR+CDI GT+DFIFGNAAVV Q+C I  R+P PN+ NT+TAQG+ DPNQ+TGIII    +T   +      +  T+LGRPWK +S TV +++ + +L+NP GWM W  +     T++YAEY N+GPG+  + RVKW GY    +     +FT
Sbjct:  362 IAKDIGFVNNAGASKHQAVALRSGSDRSVFFRCSFDGFQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQSCKIMPRQPLPNQFNTITAQGKKDPNQNTGIIIQKSTITPFGN----NLTAPTYLGRPWKDFSTTVIMQSDIGALLNPVGWMSWVPNVEPPTTIFYAEYQNSGPGADVSQRVKWAGYKPTITDRNAEEFT 559          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME21_ARATH (Probable pectinesterase/pectinesterase inhibitor 21 OS=Arabidopsis thaliana GN=PME21 PE=2 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 6.230e-59
Identity = 103/201 (51.24%), Postives = 134/201 (66.67%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            IA++I   NTAG   HQAVA+R  SD S+F+ C F+GYQDTLY HS R+F+R+C I GT+DF+FG+AA V QNC +  RKP PN+   +TA GR DP +STG +   C +    D   V+ + K +LGRPWK+YSRT+ + TF+   + P GW  W GDF L TL+Y+E  NTGPGS+ ANRV W G   L S   + +FT
Sbjct:  344 IAKNIGFENTAGAIKHQAVAVRVQSDESIFFNCRFDGYQDTLYTHSHRQFFRDCTISGTIDFLFGDAAAVFQNCTLLVRKPLPNQACPITAHGRKDPRESTGFVFQGCTIAGEPDYLAVKETSKAYLGRPWKEYSRTIIMNTFIPDFVQPQGWQPWLGDFGLKTLFYSEVQNTGPGSALANRVTWAGIKTL-SEEDILKFT 543          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME1_ARATH (Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 6.888e-58
Identity = 106/202 (52.48%), Postives = 143/202 (70.79%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEW-SGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            I +DI I NTAG   HQAVA RSGSD SV+Y+CSF+G+QDTLY HS R+FYR+CD+ GT+DFIFG+AAVV Q C I  R+P  N+ NT+TAQG+ DPNQS+G+ I  C ++A  ++        T+LGRPWK++S TV ++T + +++ P+GWM W SG     ++ Y EY NTGPGS    RVKW GY  + S ++ ++FT
Sbjct:  369 IMKDIGIINTAGAAKHQAVAFRSGSDFSVYYQCSFDGFQDTLYPHSNRQFYRDCDVTGTIDFIFGSAAVVFQGCKIMPRQPLSNQFNTITAQGKKDPNQSSGMSIQRCTISANGNV-----IAPTYLGRPWKEFSTTVIMETVIGAVVRPSGWMSWVSGVDPPASIVYGEYKNTGPGSDVTQRVKWAGYKPVMSDAEAAKFT 565          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME54_ARATH (Probable pectinesterase/pectinesterase inhibitor 54 OS=Arabidopsis thaliana GN=PME54 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.175e-57
Identity = 103/192 (53.65%), Postives = 131/192 (68.23%), Query Frame = -1
Query:   39 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP--PNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEW--SGDFALNTLYYAEYMNTGPGSSTANRVKWRGYH 602
            IARDI I+N AGP  HQA+AL   SD SV YRCS  GYQDTLY  + R+FYRECDIYGT+DFIFGNAA V Q+CNIF R+P      N + A GRTD  Q+TG  +H+CR+   SDL PV+    ++LGRPW++YSR + +++++D  I   GW  W  SGD  L TLY+ E+ N GP +  + RV W G+H
Sbjct:  286 IARDIGIKNIAGPRGHQAIALSITSDQSVLYRCSISGYQDTLYAAALRQFYRECDIYGTIDFIFGNAAAVFQSCNIFLRRPHGVKAYNVILANGRTDQRQNTGFALHSCRIRTDSDLSPVKHKYSSYLGRPWRKYSRAIVMESYIDDAIAEGGWAGWLDSGDEVLKTLYFGEFKNYGPKARISKRVTWEGFH 477          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME28_ARATH (Putative pectinesterase/pectinesterase inhibitor 28 OS=Arabidopsis thaliana GN=PME28 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.175e-57
Identity = 101/201 (50.25%), Postives = 134/201 (66.67%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPP-NRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            IA++I   NTAG   HQAVA+R  +D S+FY C F+GYQDTLY HS R+FYR+C I GT+DF+FG+AA V QNC +  RKP  N+   +TA GR DP +STG ++  C +    D   V+   KT+LGRPWK+YSRT+ + TF+   + P GW  W G+F LNTL+Y+E  NTGPG++   RV W G   L S  ++ +FT
Sbjct:  341 IAKNIAFENTAGAIKHQAVAIRVLADESIFYNCKFDGYQDTLYAHSHRQFYRDCTISGTIDFLFGDAAAVFQNCTLLVRKPLLNQACPITAHGRKDPRESTGFVLQGCTIVGEPDYLAVKEQSKTYLGRPWKEYSRTIIMNTFIPDFVPPEGWQPWLGEFGLNTLFYSEVQNTGPGAAITKRVTWPGIKKL-SDEEILKFT 540          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME26_ARATH (Putative pectinesterase/pectinesterase inhibitor 26 OS=Arabidopsis thaliana GN=PME26 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 3.418e-57
Identity = 103/201 (51.24%), Postives = 141/201 (70.15%), Query Frame = -1
Query:    3 RDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSG--DFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 596
            +D+ I NTAGP  HQAVA RS SD SV+YRCSF+GYQDTLY HS R++YR CD+ GTVDFIFG   VV Q C+I  R+P PN+ NT+TA+G  + NQ+TGI IH C ++   ++     +  T+LGRPWK +S+TV +++ + S +NPAGW+ W+   D    T++Y EY N+GPGS  + RVKW GY  ++S  + ++FT
Sbjct:  751 KDMGIINTAGPEKHQAVAFRSDSDRSVYYRCSFDGYQDTLYTHSNRQYYRNCDVTGTVDFIFGAGTVVFQGCSIRPRQPLPNQFNTITAEGTQEANQNTGISIHQCTISPNGNV-----TATTYLGRPWKLFSKTVIMQSVIGSFVNPAGWIAWNSTYDPPPRTIFYREYKNSGPGSDLSKRVKWAGYKPISSDDEAARFT 946          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME43_ARATH (Putative pectinesterase/pectinesterase inhibitor 43 OS=Arabidopsis thaliana GN=PME43 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 6.447e-56
Identity = 96/187 (51.34%), Postives = 129/187 (68.98%), Query Frame = -1
Query:   45 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPNRTNTL-TAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRG 602
            +A+DI   NTAG   HQAVALR  +D +VF+ C   GYQDTLYVH+ R+FYR C + GT+DF+FG+A  V QNC    R+P      + TAQGR D  ++TGI+IHN R+T  +   PV++  + FLGRPWK++SRT+ + T +D +I+P GW++W+  FALNTL+Y EY N G GS    RV+WRG
Sbjct:  481 MAKDIGFENTAGAARHQAVALRVSADFAVFFNCHMNGYQDTLYVHTHRQFYRNCRVSGTIDFVFGDAKAVFQNCEFVIRRPMEHQQCIVTAQGRKDRRETTGIVIHNSRITGDASYLPVKAKNRAFLGRPWKEFSRTIIMNTEIDDVIDPEGWLKWNETFALNTLFYTEYRNRGRGSGQGRRVRWRG 667          
The following BLAST results are available for this feature:
BLAST of FC919336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
PME45_ARATH6.656e-6154.95Putative pectinesterase/pectinesterase inhibitor 4... [more]
PME12_ARATH6.656e-6154.45Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME13_ARATH8.693e-6154.17Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME3_PHAVU2.796e-5953.96Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=... [more]
PME21_ARATH6.230e-5951.24Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME1_ARATH6.888e-5852.48Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 P... [more]
PME54_ARATH1.175e-5753.65Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME28_ARATH1.175e-5750.25Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME26_ARATH3.418e-5751.24Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME43_ARATH6.447e-5651.34Putative pectinesterase/pectinesterase inhibitor 4... [more]

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Properties
Property NameValue
Genbank descriptionC16000A09SK PCR Citrus clementina cDNA clone C16000A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919336 ID=FC919336; Name=FC919336; organism=Citrus clementina; type=EST; length=602bp
TCGGTGAACTGGCTAACCTGGGACGGACTGGTAAGAACGTGATAGCCACG
CCACTTGACTCTGTTAGCAGTTGAAGAACCCGGGCCAGTGTTCATATACT
CAGCATAATACAGTGTATTCAAAGCAAAATCACCACTCCATTCCATCCAT
CCAGCGGGGTTTATCAAGCTGTCAAGGAAGGTCTTGATATAAACGGTTCG
CGAGTACTGCTTCCAGGGCCTCCCAAGGAACGTCTTAACGGAGCTTTGAA
CAGGCTTCAAGTCGGAAGCAGCAGTGACCCTACAGTTGTGAATAATGATT
CCAGTGCTCTGGTTAGGGTCGGTTCTGCCTTGTGCGGTGAGAGTGTTGGT
CCTGTTGGGGGGTTTGCGCGCAAATATGTTGCAGTTTTGTAACACAACCG
CAGCGTTACCAAATATGAAATCCACTGTCCCATAAATGTCACACTCTCTG
TAGAATCGACGCTGTGAATGAACGTAGAGGGTGTCCTGGTATCCTTCAAA
GCTGCATCTGTAGAAAACTGAGAGATCCGACCCGGAACGCAGTGCCACCG
CCTGGTGATTGTTTGGACCCGCAGTGTTGCGGATTGTTATGTCACGAGCA
AT
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