FC919336

Overview
NameFC919336
Unique NameFC919336
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length602
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME30_ARATH (Probable pectinesterase 30 OS=Arabidopsis thaliana GN=PME30 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.199e-55
Identity = 101/201 (50.25%), Postives = 134/201 (66.67%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPP-NRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            I  D+  RNTAGP    AVALR   D+SV YRC  EGYQD LY HS R+FYREC I GTVDFI GNA  V Q C I AR+P   ++N +TAQ R   +  +G  I NC +T +SDL    ++VKT+LGRPW+++S    +++F+  L++PAGW  W G+  L+TL+Y EY N GPG+ T+ RVKW G+ V+  P + ++FT
Sbjct:  277 IGVDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRVEGYQDALYPHSDRQFYRECFITGTVDFICGNAVAVFQFCQIVARQPKMGQSNVITAQSRATKDVKSGFSIQNCNITTSSDLD--TATVKTYLGRPWRRFSTVAVLQSFIGDLVDPAGWTPWKGETGLSTLHYREYQNRGPGAVTSRRVKWSGFKVMKDPKKATEFT 475          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME42_ARATH (Probable pectinesterase/pectinesterase inhibitor 42 OS=Arabidopsis thaliana GN=PME42 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 9.309e-55
Identity = 102/201 (50.75%), Postives = 133/201 (66.17%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            I  D+  RNT GP    AVALR   D+SV YRC  EGYQD LY H  R+FYREC I GTVDFI GNAA V Q C I AR+P   ++N +TAQ R   +  +G  I NC +TA+SDL    ++VKT+LGRPW+ +S    +++F+  L++PAGW  W G+  L+TL+Y EY N GPG+ T+ RVKW G+ V+  P Q ++FT
Sbjct:  304 IGVDMCFRNTVGPAKGPAVALRVSGDMSVIYRCRVEGYQDALYPHIDRQFYRECFITGTVDFICGNAAAVFQFCQIVARQPNMGQSNFITAQSRETKDDKSGFSIQNCNITASSDLD--TATVKTYLGRPWRIFSTVAVLQSFIGDLVDPAGWTPWEGETGLSTLHYREYQNRGPGAVTSRRVKWSGFKVMKDPKQATEFT 502          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME19_ARATH (Probable pectinesterase/pectinesterase inhibitor 19 OS=Arabidopsis thaliana GN=PME19 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.074e-54
Identity = 102/201 (50.75%), Postives = 133/201 (66.17%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPP-NRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            I  D+  RNTAGP    AVALR   D+SV YRC  EGYQD LY HS R+FYREC I GTVDFI GNA  V Q C I AR+P   ++N +TAQ R   +  +G  I  C +TA+SDL    ++VKT+LGRPW+ +S    +++F+  L++PAGW  W G+  L+TL+Y EY N GPG+ T+ RVKW G+ V+  P Q ++FT
Sbjct:  304 IGVDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRVEGYQDALYPHSDRQFYRECFITGTVDFICGNAVAVFQFCQIVARQPKMGQSNVITAQSRAFKDIYSGFTIQKCNITASSDLD--TTTVKTYLGRPWRIFSTVAVMQSFIGDLVDPAGWTPWEGETGLSTLHYREYQNRGPGAVTSRRVKWSGFKVMKDPKQATEFT 502          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME_PETIN (Pectinesterase OS=Petunia integrifolia GN=PPE1 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 6.034e-54
Identity = 95/202 (47.03%), Postives = 133/202 (65.84%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWS-GDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            +A++I   NTAGP   QAVALR  +D ++ Y C  +GYQDTLYVH+ R+FYR+C I GTVDFIFGN   VLQNC +  RKP  N++  +TAQGRT+P Q   I++ NC +   +D   +    KT+LGRPWK+YSRT+ +++++D  I P GW  W+  +F  +T YYAEY N GPG++   R+ W+G+    +     +FT
Sbjct:  147 VAKNIGFENTAGPEKEQAVALRVSADKAIIYNCQIDGYQDTLYVHTYRQFYRDCTITGTVDFIFGNGEAVLQNCKVIVRKPAQNQSCMVTAQGRTEPIQKGAIVLQNCEIKPDTDYFSLSPPSKTYLGRPWKEYSRTIIMQSYIDKFIEPEGWAPWNITNFGRDTSYYAEYQNRGPGAALDKRITWKGFQKGFTGEAAQKFT 348          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME64_ARATH (Probable pectinesterase/pectinesterase inhibitor 64 OS=Arabidopsis thaliana GN=PME64 PE=2 SV=2)

HSP 1 Score: 210.305 bits (534), Expect = 6.034e-54
Identity = 103/194 (53.09%), Postives = 131/194 (67.53%), Query Frame = -1
Query:   51 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPNR------TNTLTAQGRTDPNQSTGIIIHNCRVTAASD-LKPVQSSV---KTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKW 602
            +ARD+TI NTAG + HQAVA RS SD SV   C F G QDTLY HS R+FY++C I G VDFIFGN+A V Q+C+I      ++       N +TA GR D +QSTG +  NC +    + +K  Q++    K FLGRPWK++SRTV++   L+SLI+P GWM W+GDFAL TLYY EY NTGPGS  ++RV W
Sbjct:  381 MARDLTIENTAGADAHQAVAFRSDSDFSVLENCEFLGNQDTLYAHSLRQFYKQCRIQGNVDFIFGNSAAVFQDCDILIASKHSKLEQGGANNAITAHGRIDASQSTGFVFLNCSINGTEEYMKEFQANPEGHKNFLGRPWKEFSRTVFVNCNLESLISPDGWMPWNGDFALKTLYYGEYKNTGPGSVRSSRVPW 574          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME51_ARATH (Probable pectinesterase/pectinesterase inhibitor 51 OS=Arabidopsis thaliana GN=PME51 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 8.713e-53
Identity = 102/193 (52.85%), Postives = 121/193 (62.69%), Query Frame = -1
Query:   51 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIF-----ARKPPNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASD----LKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKW 602
            +ARD+T +NTAGP+ HQAVA RS SD S+   C F G QDTLY H  R+FY+ C I G VDFIFGN+A V Q+C I              N +TAQGR DP+QSTG +  NC +    +     K      K FLGRPWK YSRTV+I   L++LI P GW+ WSGDFAL TLYY E  NTGPGS  + RV W
Sbjct:  331 MARDLTFQNTAGPDAHQAVAFRSDSDFSLIENCEFLGNQDTLYAHGLRQFYKNCRIQGNVDFIFGNSAAVFQDCEILIAPRQINPEKGEKNAVTAQGRIDPSQSTGFVFLNCLINGTEEYMKLFKANPKVHKNFLGRPWKDYSRTVFIGCNLEALITPDGWLPWSGDFALKTLYYGESKNTGPGSDRSQRVSW 523          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME_BRANA (Probable pectinesterase/pectinesterase inhibitor OS=Brassica napus GN=BP19 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 5.120e-45
Identity = 93/202 (46.04%), Postives = 127/202 (62.87%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARK-PPNRTNTLTAQGRTDPNQ-STGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            +A+ I  +NTAGP  HQAVA R   D +V + C F+GYQDTLYV++ R+FYR   + GTVDFIFG +A V+QN  I  RK  P +TN +TA G         GI++HNCR+ A  +L+  + +VK++LGRPWK ++ T  I T +  LI P GW EW G+    T  Y E+ N GPG++TA RV W    +  S ++V +FT
Sbjct:  363 MAKWIGFQNTAGPLGHQAVAFRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFIFGKSATVIQNSLILCRKGSPGQTNHVTADGNEKGKAVKIGIVLHNCRIMADKELEADRLTVKSYLGRPWKPFATTAVIGTEIGDLIQPTGWNEWQGEKFHLTATYVEFNNRGPGANTAARVPWA--KMAKSAAEVERFT 562          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME56_ARATH (Probable pectinesterase 56 OS=Arabidopsis thaliana GN=PME56 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.490e-44
Identity = 82/153 (53.59%), Postives = 112/153 (73.20%), Query Frame = -1
Query:  147 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPP-NRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGW 602
            +A+D+ IRNTAGP   QAVALR  +D+++ YRC  + YQDTLY +S R+FYR+C I GTVDFIFG AA V Q C I ARKP   +TN LTAQ R +   ++G     C ++A+SDL P++ +VKTFLGRPW+ +SR V++++F+D +I+ AGW
Sbjct:  134 MAQDLCIRNTAGPEKRQAVALRISTDMTIIYRCRIDAYQDTLYAYSGRQFYRDCYITGTVDFIFGRAAAVFQYCQIEARKPGIGQTNILTAQSREEDTATSGFSFQKCNISASSDLTPIKGTVKTFLGRPWRAFSRVVFMESFIDDVIDRAGW 286          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME_MEDSA (Pectinesterase/pectinesterase inhibitor OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.541e-44
Identity = 89/193 (46.11%), Postives = 116/193 (60.10%), Query Frame = -1
Query:   27 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPNRTNTL-TAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTS 602
            +A+DI   NTAG   HQAVALR  +D ++FY C  +G+QDTLYV SQR+FYR+C I GT+DF+FG    V QNC +  R P      L TA GR   N ++ ++  +   T    L  V   V ++LGRPWKQYS+ V + + +D++  P G+M W G     T  Y EY N GPG+ T  RVKW G  VLTS
Sbjct:  220 MAKDIGFENTAGTGKHQAVALRVTADQAIFYNCQMDGFQDTLYVQSQRQFYRDCSISGTIDFVFGERFGVFQNCKLVCRLPAKGQQCLVTAGGREKQNSASALVFQSSHFTGEPALTSVTPKV-SYLGRPWKQYSKVVIMDSTIDAIFVPEGYMPWMGSAFKETCTYYEYNNKGPGADTNLRVKWHGVKVLTS 411          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME37_ARATH (Probable pectinesterase/pectinesterase inhibitor VGDH2 OS=Arabidopsis thaliana GN=VGDH2 PE=2 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 3.319e-44
Identity = 90/202 (44.55%), Postives = 126/202 (62.38%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARK-PPNRTNTLTAQG-RTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            +A+ I  +NTAGP  HQAVALR   D +V + C F+GYQDTLYV++ R+FYR   + GTVDFIFG +A V+QN  I  RK  P ++N +TA G         GI++HNCR+    +L+  + ++K++LGRPWK+++ TV I T +  LI P GW EW G+    T  Y E+ N GPG++T  R  W    V  S ++V  +T
Sbjct:  367 MAKWIGFKNTAGPLGHQAVALRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFIFGKSATVIQNSLILVRKGSPGQSNYVTADGNEKGAAMKIGIVLHNCRIIPDKELEADKLTIKSYLGRPWKKFATTVIIGTEIGDLIKPEGWTEWQGEQNHKTAKYIEFNNRGPGAATTQRPPW--VKVAKSAAEVETYT 566          
The following BLAST results are available for this feature:
BLAST of FC919336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
PME30_ARATH3.199e-5550.25Probable pectinesterase 30 OS=Arabidopsis thaliana... [more]
PME42_ARATH9.309e-5550.75Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME19_ARATH2.074e-5450.75Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME_PETIN6.034e-5447.03Pectinesterase OS=Petunia integrifolia GN=PPE1 PE=... [more]
PME64_ARATH6.034e-5453.09Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME51_ARATH8.713e-5352.85Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME_BRANA5.120e-4546.04Probable pectinesterase/pectinesterase inhibitor O... [more]
PME56_ARATH1.490e-4453.59Probable pectinesterase 56 OS=Arabidopsis thaliana... [more]
PME_MEDSA2.541e-4446.11Pectinesterase/pectinesterase inhibitor OS=Medicag... [more]
PME37_ARATH3.319e-4444.55Probable pectinesterase/pectinesterase inhibitor V... [more]

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Properties
Property NameValue
Genbank descriptionC16000A09SK PCR Citrus clementina cDNA clone C16000A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919336 ID=FC919336; Name=FC919336; organism=Citrus clementina; type=EST; length=602bp
TCGGTGAACTGGCTAACCTGGGACGGACTGGTAAGAACGTGATAGCCACG
CCACTTGACTCTGTTAGCAGTTGAAGAACCCGGGCCAGTGTTCATATACT
CAGCATAATACAGTGTATTCAAAGCAAAATCACCACTCCATTCCATCCAT
CCAGCGGGGTTTATCAAGCTGTCAAGGAAGGTCTTGATATAAACGGTTCG
CGAGTACTGCTTCCAGGGCCTCCCAAGGAACGTCTTAACGGAGCTTTGAA
CAGGCTTCAAGTCGGAAGCAGCAGTGACCCTACAGTTGTGAATAATGATT
CCAGTGCTCTGGTTAGGGTCGGTTCTGCCTTGTGCGGTGAGAGTGTTGGT
CCTGTTGGGGGGTTTGCGCGCAAATATGTTGCAGTTTTGTAACACAACCG
CAGCGTTACCAAATATGAAATCCACTGTCCCATAAATGTCACACTCTCTG
TAGAATCGACGCTGTGAATGAACGTAGAGGGTGTCCTGGTATCCTTCAAA
GCTGCATCTGTAGAAAACTGAGAGATCCGACCCGGAACGCAGTGCCACCG
CCTGGTGATTGTTTGGACCCGCAGTGTTGCGGATTGTTATGTCACGAGCA
AT
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