FC919336

Overview
NameFC919336
Unique NameFC919336
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length602
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC919336_ssr142 microsatellite FC919336_ssr142:142..153. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4178 contig Ccv1_Contig4178:906..1507. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME4_ARATH (Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 8.174e-43
Identity = 89/202 (44.06%), Postives = 121/202 (59.90%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARK-PPNRTNTLTAQG-RTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            +A+ +  +NTAGP  HQA A+R   D +V + C F+GYQDTLYV++ R+FYR C + GTVDFIFG +A V+QN  I  RK    + NT+TA G         GI++ NCR+     L P + +V T+LGRPWK++S TV + T +  LI P GW  W G+    +  Y EY N GPG+    RV W    V  S ++V+ FT
Sbjct:  367 MAKWMGFKNTAGPMGHQAAAIRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNCVVSGTVDFIFGKSATVIQNTLIVVRKGSKGQYNTVTADGNELGLGMKIGIVLQNCRIVPDRKLTPERLTVATYLGRPWKKFSTTVIMSTEMGDLIRPEGWKIWDGESFHKSCRYVEYNNRGPGAFANRRVNWA--KVARSAAEVNGFT 566          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME_BRACM (Pectinesterase/pectinesterase inhibitor (Fragment) OS=Brassica campestris PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.068e-42
Identity = 90/202 (44.55%), Postives = 126/202 (62.38%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARK-PPNRTNTLTAQGRTDPNQ-STGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            +A+ I  +NTAGP  +QAVA R   D +V + C F+GYQDTLYV++ R+FYR   + GTVDFI G +A V+QN  I  RK  P +TN +TA G+        GI++HNCR+ A  +L+  + +VK++LGRPWK ++ T  I T +  LI P GW EW G+    T  Y E+ N GPG++ A RV W    +  S ++V +FT
Sbjct:  350 MAKWIGFQNTAGPLGNQAVAFRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFINGKSATVIQNSLILCRKGSPGQTNHVTADGKQKGKAVKIGIVLHNCRIMADKELEADRLTVKSYLGRPWKPFATTAVIGTEIGDLIQPTGWNEWQGEKFHLTATYVEFNNRGPGANPAARVPWA--KMAKSAAEVERFT 549          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME5_ARATH (Pectinesterase 5 OS=Arabidopsis thaliana GN=PME5 PE=2 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 4.485e-41
Identity = 87/202 (43.07%), Postives = 121/202 (59.90%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARK-PPNRTNTLTAQGRTDP-NQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            +A+ I  +NTAGP  HQAVA+R   D +V + C F+GYQDTLYV++ R+FYR   + GTVDFIFG +A V+QN  I  RK    + NT+TA G         GI++ NCR+     L   +  V+++LGRPWK++S TV I + +  +I P GW  W G+    +  Y EY N GPG+ T  RV W    +  S ++V+ FT
Sbjct:  374 MAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFIFGKSATVIQNSLIVVRKGNKGQFNTVTADGNEKGLAMKIGIVLQNCRIVPDKKLAAERLIVESYLGRPWKKFSTTVIINSEIGDVIRPEGWKIWDGESFHKSCRYVEYNNRGPGAITNRRVNW--VKIARSAAEVNDFT 573          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME53_ARATH (Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.889e-31
Identity = 72/189 (38.10%), Postives = 104/189 (55.03%), Query Frame = -1
Query:   51 IARDITIRNTA-----GPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKW 602
            +A++IT RNT      G    QAVALR  +D + F+ C   G QDTLY H  R +Y++C I G+VDFIFGNA  + + C++ A    ++   +TAQGR+   + TG     C+VT    L         +LGR W  +SR V+  T++D++I P GW  W       T++Y +Y  TG G++   RV W
Sbjct:  180 VAKNITFRNTTPVPLPGAVGKQAVALRVSADNAAFFGCRMLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNALSLYEGCHVHA--IADKLGAVTAQGRSSVLEDTGFSFVKCKVTGTGVL---------YLGRAWGPFSRVVFAYTYMDNIILPRGWYNWGDPSREMTVFYGQYKCTGAGANYGGRVAW 357          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME31_ARATH (Pectinesterase 31 OS=Arabidopsis thaliana GN=PME31 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.224e-30
Identity = 68/184 (36.96%), Postives = 100/184 (54.35%), Query Frame = -1
Query:   51 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKW 602
            IA +IT  N+A   + QAVA+R  +D   FY C F G+QDTLY+H  +++ ++C I G+VDFIFGN+  +L++C+I  +        +TAQ R    +STG +   C +T          S   +LGRPW  + R V   T++D+ I   GW  W       +  + EY   GPGS ++ RV W
Sbjct:  105 IAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHHGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKS----QGFITAQSRKSSQESTGYVFLRCVITGNG------QSGYMYLGRPWGPFGRVVLAYTYMDACIRNVGWHNWGNAENERSACFYEYRCFGPGSCSSERVPW 278          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME11_ARATH (Putative pectinesterase 11 OS=Arabidopsis thaliana GN=PME11 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.935e-30
Identity = 66/184 (35.87%), Postives = 99/184 (53.80%), Query Frame = -1
Query:   51 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKW 602
            + R +TI+N  G    +AVALR  +D + FY C    YQDTL   +   +++ C I G  DFI G+A+ + + C++ +  P N   ++TAQ RT   + +G     C++T +           TFLGRPW  YSR V+  +F  +++ P GW +W      NT+YY EY   GPG+    RV+W
Sbjct:  137 VCRFLTIQNKFGTAG-RAVALRVAADKAAFYGCVITSYQDTLLDDNGNHYFKNCYIEGATDFICGSASSLYERCHLHSLSPNN--GSITAQMRTSATEKSGFTFLGCKLTGSGS---------TFLGRPWGAYSRVVFAYSFFSNVVAPQGWNQWGDSTKENTVYYGEYKCYGPGADREQRVEW 308          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME14_ARATH (Putative pectinesterase 14 OS=Arabidopsis thaliana GN=PME14 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.655e-27
Identity = 67/204 (32.84%), Postives = 106/204 (51.96%), Query Frame = -1
Query:    3 ARDITIRNTA-----GPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 599
            A +I+ +NTA     G  + QAVAL+   D + FY C F G QDTL     R F++ C I G++DFIFGN   + ++C + +    N    +TA G+      TG +  NC++T          S + +LGR W+ Y+R ++ KT++  +++  GW +        T+YY E+   GPG++ + RV    Y  L S  + + FT
Sbjct:  131 AYNISFKNTAPAPNPGAVDAQAVALKVVGDKAAFYGCGFYGNQDTLLDQEGRHFFKGCFIEGSIDFIFGNGRSLYEDCTLHSIAKENTIGCITANGKDTLKDRTGFVFVNCKIT---------GSARVWLGRAWRPYARVIFSKTYMSRVVSLDGWNDMGDPKTQRTVYYGEHRCYGPGANHSKRVT---YAKLLSDVEAAPFT 322          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME55_ARATH (Probable pectinesterase 55 OS=Arabidopsis thaliana GN=PME55 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.121e-26
Identity = 64/170 (37.65%), Postives = 87/170 (51.18%), Query Frame = -1
Query:   51 AVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFA---RKPPNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKW 551
            AVA   G D S FY   F G QDTL+    R ++  C I G VDFI G+   + Q+C I     +  P  T  +TAQGRT+ N + G +  NC V             K +LGR W+ YSR ++  + L  +++P GW EW+       L YAE+   G GS+T+ R KW
Sbjct:  139 AVAAFIGGDKSAFYSVGFAGIQDTLWDSDGRHYFHRCTIQGAVDFILGSGQSIYQSCVIQVLGGQLGPGVTGYITAQGRTNANDANGFVFINCLVHGFG---------KAYLGRAWRPYSRVIFYNSNLTDVVDPLGWWEWNYQGYEKQLTYAEHGCFGSGSNTSRRAKW 299          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME15_ARATH (Probable pectinesterase 15 OS=Arabidopsis thaliana GN=PME15 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.121e-26
Identity = 65/189 (34.39%), Postives = 96/189 (50.79%), Query Frame = -1
Query:   57 ARDITIRNTA-----GPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPNR---TNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRV 599
            A +I+ +N A     G  + QAVALR   D + FY C F G QDTL     R F++EC I G++DFIFGN   + Q+C I +    N    T ++TAQGR   ++ +G    NC++  + ++          LGR W  Y+  V+  T++  +I P GW  W       T+ + E+   GPG+    RV
Sbjct:  180 AYNISFKNNAPEPDPGEADAQAVALRIEGDQAAFYGCGFYGAQDTLLDDKGRHFFKECFIQGSIDFIFGNGRSLYQDCTINSIAKGNTSGVTGSITAQGRQSEDEQSGFSFVNCKIDGSGEI---------LLGRAWGAYATVVFSNTYMSGIITPEGWNNWGDSTKEKTVTFGEHKCYGPGADYKERV 359          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME62_ARATH (Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT1 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.186e-25
Identity = 67/187 (35.83%), Postives = 88/187 (47.06%), Query Frame = -1
Query:   51 ARDITIRNT----AGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKW 599
            A  IT  NT    AG    QAVALR   D +VFYR    G QDTL+  +   ++ +C I G VDFIFGNA  + Q+C+I       R   + A  R    + TG    NC ++    +         +LGR W  YSRTVY   F+  +I P GW +W        + + EY   G G+    RV W
Sbjct:  179 ATAITFENTVVAEAGEQGRQAVALRIIGDKAVFYRVRVLGSQDTLFDDNGSHYFYQCYIQGNVDFIFGNAKSLYQDCDI--HSTAKRYGAIAAHHRDSETEDTGFSFVNCDISGTGQI---------YLGRAWGNYSRTVYSNCFIADIITPVGWSDWKHPERQRKVMFGEYNCRGRGAERGGRVPW 354          
The following BLAST results are available for this feature:
BLAST of FC919336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
PME4_ARATH8.174e-4344.06Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 P... [more]
PME_BRACM1.068e-4244.55Pectinesterase/pectinesterase inhibitor (Fragment)... [more]
PME5_ARATH4.485e-4143.07Pectinesterase 5 OS=Arabidopsis thaliana GN=PME5 P... [more]
PME53_ARATH1.889e-3138.10Probable pectinesterase 53 OS=Arabidopsis thaliana... [more]
PME31_ARATH1.224e-3036.96Pectinesterase 31 OS=Arabidopsis thaliana GN=PME31... [more]
PME11_ARATH7.935e-3035.87Putative pectinesterase 11 OS=Arabidopsis thaliana... [more]
PME14_ARATH1.655e-2732.84Putative pectinesterase 14 OS=Arabidopsis thaliana... [more]
PME55_ARATH3.121e-2637.65Probable pectinesterase 55 OS=Arabidopsis thaliana... [more]
PME15_ARATH3.121e-2634.39Probable pectinesterase 15 OS=Arabidopsis thaliana... [more]
PME62_ARATH1.186e-2535.83Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT... [more]

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Properties
Property NameValue
Genbank descriptionC16000A09SK PCR Citrus clementina cDNA clone C16000A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919336 ID=FC919336; Name=FC919336; organism=Citrus clementina; type=EST; length=602bp
TCGGTGAACTGGCTAACCTGGGACGGACTGGTAAGAACGTGATAGCCACG
CCACTTGACTCTGTTAGCAGTTGAAGAACCCGGGCCAGTGTTCATATACT
CAGCATAATACAGTGTATTCAAAGCAAAATCACCACTCCATTCCATCCAT
CCAGCGGGGTTTATCAAGCTGTCAAGGAAGGTCTTGATATAAACGGTTCG
CGAGTACTGCTTCCAGGGCCTCCCAAGGAACGTCTTAACGGAGCTTTGAA
CAGGCTTCAAGTCGGAAGCAGCAGTGACCCTACAGTTGTGAATAATGATT
CCAGTGCTCTGGTTAGGGTCGGTTCTGCCTTGTGCGGTGAGAGTGTTGGT
CCTGTTGGGGGGTTTGCGCGCAAATATGTTGCAGTTTTGTAACACAACCG
CAGCGTTACCAAATATGAAATCCACTGTCCCATAAATGTCACACTCTCTG
TAGAATCGACGCTGTGAATGAACGTAGAGGGTGTCCTGGTATCCTTCAAA
GCTGCATCTGTAGAAAACTGAGAGATCCGACCCGGAACGCAGTGCCACCG
CCTGGTGATTGTTTGGACCCGCAGTGTTGCGGATTGTTATGTCACGAGCA
AT
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