FC919336

Overview
NameFC919336
Unique NameFC919336
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length602
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME68_ARATH (Probable pectinesterase 68 OS=Arabidopsis thaliana GN=PME68 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.642e-25
Identity = 69/191 (36.13%), Postives = 96/191 (50.26%), Query Frame = -1
Query:   51 ARDITIRNTA-----GPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALN---TLYYAEYMNTGPGSSTANRVKW 599
            AR+I+  NTA     G    QAVA R   D + F  C F G QDTL   + R +++EC I G++DFIFGN   + ++C +      +R  ++ A GRT P + TG     CRVT    L         ++GR   QYSR VY  T+ D+L+   GW +W  D   N   T ++  Y   GPG++    V W
Sbjct:  156 ARNISFTNTAPAPLPGMQGWQAVAFRISGDKAFFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCEL--HSIASRFGSIAAHGRTCPEEKTGFAFVGCRVTGTGPL---------YVGRAMGQYSRIVYAYTYFDALVAHGGWDDW--DHKSNKSKTAFFGVYNCYGPGAAATRGVSW 333          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME29_ARATH (Probable pectinesterase 29 OS=Arabidopsis thaliana GN=PME29 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.642e-25
Identity = 64/170 (37.65%), Postives = 84/170 (49.41%), Query Frame = -1
Query:   51 AVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNI---FARKPPNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKW 551
            AVA   G D S FY   F G QDTL+    R ++  C I G VDFIFG    + Q+C I     +  P     +TAQGRT+P  + G I  NC V               FLGRPW+ YSR ++  + L  ++ P GW  W+     N L +AE+   G G++   RVKW
Sbjct:  144 AVAALIGGDKSAFYSVGFAGIQDTLWDFDGRHYFHRCTIQGAVDFIFGTGQSIYQSCVIQVLGGQLEPGLAGYITAQGRTNPYDANGFIFINCLVYGTG---------MAFLGRPWRGYSRVIFYNSNLTDVVVPEGWDAWNFVGHENQLVFAEHGCFGSGANIGRRVKW 304          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME8_ARATH (Probable pectinesterase 8 OS=Arabidopsis thaliana GN=PME8 PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 5.885e-25
Identity = 63/195 (32.31%), Postives = 102/195 (52.31%), Query Frame = -1
Query:   51 IARDITIRNTA-----GPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFAR----KPPNR--TNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKW 602
            +A++I+  N A     G    QAVA+R   D S F  C F G QDTL+    R ++++C I G++DFIFGNA  + Q+C I +      P ++     +TA GR+  ++++G    NC +     +         +LGR W+ YSR V++ T +  +I P GW  ++      T++Y EY  +GPG+  + R  +
Sbjct:  179 VAKNISFMNVAPIPKPGDVGAQAVAIRIAGDESAFVGCGFFGAQDTLHDDRGRHYFKDCYIQGSIDFIFGNAKSLYQDCRIISMANQLSPGSKAVNGAVTANGRSSKDENSGFSFVNCTIGGTGHV---------WLGRAWRPYSRVVFVSTTMTDVIAPEGWNNFNDPSRDATIFYGEYNCSGPGADMSKRAPY 364          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME10_ARATH (Putative pectinesterase 10 OS=Arabidopsis thaliana GN=PME10 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.712e-24
Identity = 66/198 (33.33%), Postives = 92/198 (46.46%), Query Frame = -1
Query:    3 IRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARK---PPNRT-NTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 584
            I +++ P      A+  G   ++    SF+G+QDTLY    R +Y+ C I G +DFIFG A  + + C +  R    PPN    T+TAQGR  P    G +  +C V           S K  LGR WK YSR ++ ++     I P GW  W        + + E+  TG G+ T+ RV W       S   V QFT
Sbjct:  137 IASSSSPTKPAVAAMMLGDKYAII-DSSFDGFQDTLYDDYGRHYYKRCVISGGIDFIFGGAQSIFEGCTLKLRVGIYPPNEVYGTITAQGRDSPTDKGGFVFKDCTV---------MGSGKALLGRAWKSYSRVIFYRSMFSDNILPIGWDAWKAKGQEGHITFVEFGCTGVGADTSKRVPWL---TKASEKDVLQFT 321          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME50_ARATH (Probable pectinesterase 50 OS=Arabidopsis thaliana GN=PME50 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.921e-24
Identity = 65/187 (34.76%), Postives = 94/187 (50.27%), Query Frame = -1
Query:   51 ARDITIRNTAGP----NNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKW 599
            A  +TI+NTA      +  QA+A+R  +D + FY C F G+QDTL       F+++C I GT DFIFG  A +  N  + A    +    +TAQGR    +  G    +C+VT         +    +LGR W  + + VY  T + S++NP+GW E        T++Y EY   GPGS    RV +
Sbjct:  155 AAHLTIKNTAPMPKPGSQGQALAMRINADKAAFYSCRFHGFQDTLCDDKGNHFFKDCYIEGTYDFIFGRGASLYLNTQLHA--VGDGLRVITAQGRQSATEQNGYTFVHCKVTG--------TGTGIYLGRSWMSHPKVVYAFTEMTSVVNPSGWRENLNRGYDKTVFYGEYKCFGPGSHLEKRVPY 331          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME_ASPAC (Pectinesterase OS=Aspergillus aculeatus GN=pme1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.507e-24
Identity = 66/176 (37.50%), Postives = 97/176 (55.11%), Query Frame = -1
Query:   75 DITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFG-NAAVVLQNCNIFARKPPNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLY--YAEYMNTGPGS 593
            ++ I NT G   HQA+AL + +D   +Y C+F GYQDTL   +  + Y    I G VDFIFG +A    QN +I   + P  + ++TA GR+    ++  +I+   V A       + +   +LGRPW +Y+R V+ +T + ++IN  GW EWS     NT Y  + EY NTG GS
Sbjct:  126 NLNIANTCGQACHQALALSAWADQQGYYGCNFTGYQDTLLAQTGNQLYINSYIEGAVDFIFGQHARAWFQNVDIRVVEGPT-SASITANGRSSETDTSYYVINKSTVAAKEGDDVAEGTY--YLGRPWSEYARVVFQQTSMTNVINSLGWTEWSTS-TPNTEYVTFGEYANTGAGS 297          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME67_ARATH (Probable pectinesterase 67 OS=Arabidopsis thaliana GN=PME67 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.473e-23
Identity = 62/191 (32.46%), Postives = 92/191 (48.17%), Query Frame = -1
Query:   51 IARDITIRNTAG-----PNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIF--ARKPPNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKW 602
            +A  I+IRN A       + +Q+VA    +D   FY C+F    +TL+ +  R +Y EC I G++DFIFG A  +  NC IF  + K      ++TA  R    + TG +    +V    ++         +LGR    YSR ++ KT+L   + P GW  WS   +   LY+ EY   GPG+    R  W
Sbjct:  131 VAFGISIRNDAPVGMAFTSENQSVAAFVAADKVAFYHCAFYSLHNTLFDNKGRHYYHECYIQGSIDFIFGRATSIFNNCEIFVISDKRVKPYGSITAHHRESAEEKTGYVFIRGKVYGIDEV---------YLGRAKGPYSRVIFAKTYLSKTVVPDGWTNWSYHGSTQNLYHGEYKCHGPGAERQKRSDW 312          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME_ASPTU (Pectinesterase OS=Aspergillus tubingensis GN=pme1 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.218e-23
Identity = 66/175 (37.71%), Postives = 95/175 (54.29%), Query Frame = -1
Query:   75 DITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFG-NAAVVLQNCNIFARKPPNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFA-LNTLYYAEYMNTGPGS 593
            ++ I NT G   HQA+A+ + +    +Y C F GYQDTL   +  + Y    I G VDFIFG +A      C+I   + P+ + ++TA GR+  +  +  +IH   V AA+D   V SS   +LGRPW QY+R  + KT +  +IN  GW EWS        + + EY NTG G+
Sbjct:  125 NLNIANTCGQACHQALAVSAYASEQGYYACQFTGYQDTLLAETGYQVYAGTYIEGAVDFIFGQHARAWFHECDIRVLEGPS-SASITANGRSSESDDSYYVIHKSTV-AAADGNDV-SSGTYYLGRPWSQYARVCFQKTSMTDVINHLGWTEWSTSTPNTENVTFVEYGNTGTGA 296          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME49_ARATH (Probable pectinesterase 49 OS=Arabidopsis thaliana GN=PME49 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.954e-22
Identity = 58/166 (34.94%), Postives = 80/166 (48.19%), Query Frame = -1
Query:   57 QAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRV 554
            QA+A+R   D + FY C F G+QDTL       F++ C I GT DFIFG  A +     + A    +    + A  R    +  G    +C+VT              +LGR W  + + VY  T + S++NP+GW E        T++Y EYM TGPGS  A RV
Sbjct:  174 QALAMRINGDKAAFYNCRFYGFQDTLCDDRGNHFFKNCYIEGTYDFIFGRGASLYLTTQLHA--VGDGLRVIAAHNRQSTTEQNGYSFVHCKVTGV--------GTGIYLGRAWMSHPKVVYSYTEMSSVVNPSGWQENRVRAHDKTVFYGEYMCTGPGSHKAKRV 329          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME66_ARATH (Probable pectinesterase 66 OS=Arabidopsis thaliana GN=PME66 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.559e-20
Identity = 63/190 (33.16%), Postives = 86/190 (45.26%), Query Frame = -1
Query:   51 ITIRNTAG--PNNHQ----AVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFAR----KPPNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKW 590
            IT +NT    PNN +    AVA R   D  V    SF G QDTL+    R +Y+ C I G +DFIFG    + + C +        P N   T+TA  R  P+   G +  +C VT            KT LGR W   +R ++ ++ L  ++ P GW  W        L + E   TG G+ T+ RV W
Sbjct:  123 ITFKNTYNIVPNNKREIVPAVAARMLGDRYVVTDSSFVGLQDTLFDGKGRHYYKRCIISGGIDFIFGYGQSLFKECTLNMTLGIYAPDNPYGTITAHQRPSPSDEGGFVFSDCTVTGVG---------KTLLGRAWGSNARVIFDRSRLSDVVLPIGWDAWRAKGNERDLTFVEAGCTGAGADTSQRVPW 303          
The following BLAST results are available for this feature:
BLAST of FC919336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
PME68_ARATH2.642e-2536.13Probable pectinesterase 68 OS=Arabidopsis thaliana... [more]
PME29_ARATH2.642e-2537.65Probable pectinesterase 29 OS=Arabidopsis thaliana... [more]
PME8_ARATH5.885e-2532.31Probable pectinesterase 8 OS=Arabidopsis thaliana ... [more]
PME10_ARATH1.712e-2433.33Putative pectinesterase 10 OS=Arabidopsis thaliana... [more]
PME50_ARATH2.921e-2434.76Probable pectinesterase 50 OS=Arabidopsis thaliana... [more]
PME_ASPAC6.507e-2437.50Pectinesterase OS=Aspergillus aculeatus GN=pme1 PE... [more]
PME67_ARATH2.473e-2332.46Probable pectinesterase 67 OS=Arabidopsis thaliana... [more]
PME_ASPTU4.218e-2337.71Pectinesterase OS=Aspergillus tubingensis GN=pme1 ... [more]
PME49_ARATH7.954e-2234.94Probable pectinesterase 49 OS=Arabidopsis thaliana... [more]
PME66_ARATH2.559e-2033.16Probable pectinesterase 66 OS=Arabidopsis thaliana... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC16000A09SK PCR Citrus clementina cDNA clone C16000A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919336 ID=FC919336; Name=FC919336; organism=Citrus clementina; type=EST; length=602bp
TCGGTGAACTGGCTAACCTGGGACGGACTGGTAAGAACGTGATAGCCACG
CCACTTGACTCTGTTAGCAGTTGAAGAACCCGGGCCAGTGTTCATATACT
CAGCATAATACAGTGTATTCAAAGCAAAATCACCACTCCATTCCATCCAT
CCAGCGGGGTTTATCAAGCTGTCAAGGAAGGTCTTGATATAAACGGTTCG
CGAGTACTGCTTCCAGGGCCTCCCAAGGAACGTCTTAACGGAGCTTTGAA
CAGGCTTCAAGTCGGAAGCAGCAGTGACCCTACAGTTGTGAATAATGATT
CCAGTGCTCTGGTTAGGGTCGGTTCTGCCTTGTGCGGTGAGAGTGTTGGT
CCTGTTGGGGGGTTTGCGCGCAAATATGTTGCAGTTTTGTAACACAACCG
CAGCGTTACCAAATATGAAATCCACTGTCCCATAAATGTCACACTCTCTG
TAGAATCGACGCTGTGAATGAACGTAGAGGGTGTCCTGGTATCCTTCAAA
GCTGCATCTGTAGAAAACTGAGAGATCCGACCCGGAACGCAGTGCCACCG
CCTGGTGATTGTTTGGACCCGCAGTGTTGCGGATTGTTATGTCACGAGCA
AT
back to top