FC919336

Overview
NameFC919336
Unique NameFC919336
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length602
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC919336_ssr142 microsatellite FC919336_ssr142:142..153. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4178 contig Ccv1_Contig4178:906..1507. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME52_ARATH (Putative pectinesterase 52 OS=Arabidopsis thaliana GN=PME52 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 4.364e-20
Identity = 56/171 (32.75%), Postives = 84/171 (49.12%), Query Frame = -1
Query:   51 AVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPNRTNT----LTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKW 551
            AVA+    D S FY C F G QDT++ +  R  ++ C I G +DFIFG+   V ++C+I A      +      +TAQGR+  +  +G +              V  S   +LGR +  +SR ++I+T L S+++P GW  W       +  YAE    G GS  + RV W
Sbjct:  101 AVAISVYGDKSAFYNCDFLGLQDTVWDNLGRHHFKNCYIEGAIDFIFGSGQSVYEDCHINATAGALASKVSFGYITAQGRSSDSDPSGFVFLR---------GSVSGSTSVYLGRAYGPFSRVIFIQTDLSSVVHPEGWYSWHYGGYEMSFTYAEVECKGAGSDMSRRVPW 262          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PPME1_ARATH (Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PPME1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.270e-19
Identity = 56/187 (29.95%), Postives = 90/187 (48.13%), Query Frame = -1
Query:   57 IARDITIRNTA-GPNNH----QAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRV 602
            +A +I ++NTA  P+      QA+++R   + + FY C F G+QDT+   +   F+++C + GT DFIFG+   +     +       R   + A       + +G    +C+VT              +LGR W  + + VY  T + S++NP GW E        T++Y EY  +GPGS  A RV
Sbjct:  153 MAVNIVVKNTAPAPDGKTKGAQALSMRISGNFAAFYNCKFYGFQDTICDDTGNHFFKDCYVEGTFDFIFGSGTSMYLGTQLHVVGDGIRV--IAAHAGKSAEEKSGYSFVHCKVTGTGG--------GIYLGRAWMSHPKVVYAYTEMTSVVNPTGWQENKTPAHDKTVFYGEYKCSGPGSHKAKRV 329          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME48_ARATH (Probable pectinesterase 48 OS=Arabidopsis thaliana GN=PME48 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.270e-19
Identity = 56/187 (29.95%), Postives = 90/187 (48.13%), Query Frame = -1
Query:   57 IARDITIRNTA-GPNNH----QAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRV 602
            +A +I ++NTA  P+      QA+++R   + + FY C F G+QDT+   +   F+++C + GT DFIFG+   +     +       R   + A       + +G    +C+VT              +LGR W  + + VY  T + S++NP GW E        T++Y EY  +GPGS  A RV
Sbjct:  153 MAVNIVVKNTAPAPDGKTKGAQALSMRISGNFAAFYNCKFYGFQDTICDDTGNHFFKDCYVEGTFDFIFGSGTSMYLGTQLHVVGDGIRV--IAAHAGKSAEEKSGYSFVHCKVTGTGG--------GIYLGRAWMSHPKVVYAYTEMTSVVNPTGWQENKTPAHDKTVFYGEYKCSGPGSHKAKRV 329          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME63_ARATH (Putative pectinesterase 63 OS=Arabidopsis thaliana GN=PME63 PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 2.829e-19
Identity = 52/168 (30.95%), Postives = 82/168 (48.81%), Query Frame = -1
Query:   51 QAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKW 554
            QA+++R   + + FY C F GYQDT+   +   F+++C I GT DFIFG+   +     +      +    +TA       + +G    +C+VT         +    +LGR W  + + VY  T + S++NP+GW E        T++Y EY  TG GS    RVK+
Sbjct:  151 QALSMRISGNKAAFYNCKFYGYQDTICDDTGNHFFKDCYIEGTFDFIFGSGRSLYLGTQL--NVVGDGIRVITAHAGKSAAEKSGYSFVHCKVTG--------TGTGIYLGRSWMSHPKVVYAYTDMSSVVNPSGWQENREAGRDKTVFYGEYKCTGTGSHKEKRVKY 308          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PMEA_ERWCH (Pectinesterase A OS=Erwinia chrysanthemi GN=pemA PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.027e-17
Identity = 71/193 (36.79%), Postives = 98/193 (50.78%), Query Frame = -1
Query:   66 QAVAL---RSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFAR-----KPPNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPW--------------KQYSRTVYIKTFLDSLINPAGWMEWSG-DFALNTLY-------YAEYMNTGPGSSTA 554
            QAVAL   +SG D + F   S  GYQDTLYV   R F+ +C I GTVDFIFG+   +  NC++ +R     K  N +  LTA   T+ NQ  G++I N RV   SD  P +S     LGRPW                  +TV++ T +D+ I   GW + SG D   NT++       + EY + G G++ +
Sbjct:  153 QAVALYVTKSG-DRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKSGNVSGYLTAPS-TNINQKYGLVITNSRVIRESDSVPAKS---YGLGRPWHPTTTFSDGRYADPNAIGQTVFLNTSMDNHI--YGWDKMSGKDKNGNTIWFNPEDSRFFEYKSYGAGAAVS 338          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PMEA_DICD3 (Pectinesterase A OS=Dickeya dadantii (strain 3937) GN=pemA PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.027e-17
Identity = 71/193 (36.79%), Postives = 98/193 (50.78%), Query Frame = -1
Query:   66 QAVAL---RSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFAR-----KPPNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPW--------------KQYSRTVYIKTFLDSLINPAGWMEWSG-DFALNTLY-------YAEYMNTGPGSSTA 554
            QAVAL   +SG D + F   S  GYQDTLYV   R F+ +C I GTVDFIFG+   +  NC++ +R     K  N +  LTA   T+ NQ  G++I N RV   SD  P +S     LGRPW                  +TV++ T +D+ I   GW + SG D   NT++       + EY + G G++ +
Sbjct:  153 QAVALYVTKSG-DRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKSGNVSGYLTAPS-TNINQKYGLVITNSRVIRESDSVPAKS---YGLGRPWHPTTTFSDGRYADPNAIGQTVFLNTSMDNHI--YGWDKMSGKDKNGNTIWFNPEDSRFFEYKSYGAGATVS 338          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME57_ARATH (Putative pectinesterase 57 OS=Arabidopsis thaliana GN=PME57 PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.957e-13
Identity = 37/73 (50.68%), Postives = 42/73 (57.53%), Query Frame = -1
Query:  375 DITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNI 593
            D+  RNT  P     V LR   D+S+ YRC  E YQD LY H  R+ YRE  +  TVDFI GNAA V Q C I
Sbjct:  169 DMCFRNTTWPVKGPVVTLRVNGDMSIIYRCRVEEYQDALYPHKNRQCYREYFLMDTVDFICGNAAAVFQFCQI 241          
The following BLAST results are available for this feature:
BLAST of FC919336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
PME52_ARATH4.364e-2032.75Putative pectinesterase 52 OS=Arabidopsis thaliana... [more]
PPME1_ARATH1.270e-1929.95Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PP... [more]
PME48_ARATH1.270e-1929.95Probable pectinesterase 48 OS=Arabidopsis thaliana... [more]
PME63_ARATH2.829e-1930.95Putative pectinesterase 63 OS=Arabidopsis thaliana... [more]
PMEA_ERWCH2.027e-1736.79Pectinesterase A OS=Erwinia chrysanthemi GN=pemA P... [more]
PMEA_DICD32.027e-1736.79Pectinesterase A OS=Dickeya dadantii (strain 3937)... [more]
PME57_ARATH3.957e-1350.68Putative pectinesterase 57 OS=Arabidopsis thaliana... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC16000A09SK PCR Citrus clementina cDNA clone C16000A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919336 ID=FC919336; Name=FC919336; organism=Citrus clementina; type=EST; length=602bp
TCGGTGAACTGGCTAACCTGGGACGGACTGGTAAGAACGTGATAGCCACG
CCACTTGACTCTGTTAGCAGTTGAAGAACCCGGGCCAGTGTTCATATACT
CAGCATAATACAGTGTATTCAAAGCAAAATCACCACTCCATTCCATCCAT
CCAGCGGGGTTTATCAAGCTGTCAAGGAAGGTCTTGATATAAACGGTTCG
CGAGTACTGCTTCCAGGGCCTCCCAAGGAACGTCTTAACGGAGCTTTGAA
CAGGCTTCAAGTCGGAAGCAGCAGTGACCCTACAGTTGTGAATAATGATT
CCAGTGCTCTGGTTAGGGTCGGTTCTGCCTTGTGCGGTGAGAGTGTTGGT
CCTGTTGGGGGGTTTGCGCGCAAATATGTTGCAGTTTTGTAACACAACCG
CAGCGTTACCAAATATGAAATCCACTGTCCCATAAATGTCACACTCTCTG
TAGAATCGACGCTGTGAATGAACGTAGAGGGTGTCCTGGTATCCTTCAAA
GCTGCATCTGTAGAAAACTGAGAGATCCGACCCGGAACGCAGTGCCACCG
CCTGGTGATTGTTTGGACCCGCAGTGTTGCGGATTGTTATGTCACGAGCA
AT
back to top