FC920208

Overview
NameFC920208
Unique NameFC920208
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: ERF1_BLEAM (Eukaryotic peptide chain release factor subunit 1 OS=Blepharisma americanum GN=eRF1 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.220e-53
Identity = 98/165 (59.39%), Postives = 134/165 (81.21%), Query Frame = 2
Query:  221 DGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLY-NKVPPNGLVLYTGTVVTDDGK-EKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSGNTE 709
            +G E  +NIE WKIK+LI  L+ ARGNGTS+ISLI+PPR+Q+  + KM+ +E+G +SNIKSR+ RQ+V +A+TS ++RLKLY N++P NGL+LY G V+ ++G  EKK TIDF+P++ IN +LY+CDNKFHT+ L +LL  D +FGFI++DGNGTLFGTL GNT+
Sbjct:    2 EGDELTQNIEQWKIKRLIDNLDKARGNGTSLISLIIPPREQLPIINKMITEEYGKSSNIKSRIVRQAVQSALTSTKERLKLYNNRLPANGLILYCGEVINEEGVCEKKYTIDFQPYRAINTTLYICDNKFHTQPLKDLLVMDDKFGFIIIDGNGTLFGTLQGNTK 166          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: ERF1_BLEMU (Eukaryotic peptide chain release factor subunit 1 OS=Blepharisma musculus GN=eRF1 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.094e-52
Identity = 97/164 (59.15%), Postives = 132/164 (80.49%), Query Frame = 2
Query:  221 DGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLY-NKVPPNGLVLYTGTVVTDDGK-EKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSGNT 706
            +G E  +NIE WKIK+LI  L+ ARGNGTS+ISLI+PPR+Q+  + KM+ +E+G +SNIKSR+ RQ+V +A+TS ++RLKLY N++P NGL+LY G V+ ++G  EKK TIDF+P++ IN +LY+CDNKFHT+ L +LL  D +FGFI++DGNG LFGTL GNT
Sbjct:    2 EGDELTQNIEQWKIKRLIDNLDKARGNGTSLISLIIPPREQLPIINKMITEEYGKSSNIKSRIVRQAVQSALTSTKERLKLYNNRLPANGLILYCGEVINEEGVCEKKYTIDFQPYRAINTTLYICDNKFHTQPLKDLLVMDDKFGFIIIDGNGALFGTLQGNT 165          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: ERF1_TRYBB (Eukaryotic peptide chain release factor subunit 1 OS=Trypanosoma brucei brucei GN=ERF1 PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.039e-51
Identity = 97/160 (60.62%), Postives = 130/160 (81.25%), Query Frame = 2
Query:  230 ETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSGNTE 709
            E++K IE +K+KKLI+ LESARG GTS+IS+ M P++QIS +   L +E+GTASNIKS  N+ SV +AIT++  RLK YN++PPNGL+LY GTV+T + KEKK+T+D EPFKP++ SLYLCDNKFHTE L+ +LESD +FGFIV+DG+GT + TL G+ +
Sbjct:    8 ESEKAIERYKVKKLIQMLESARGMGTSVISIYMTPKEQISGMVTKLNNEYGTASNIKSHTNKLSVQSAITASLGRLKQYNRLPPNGLLLYCGTVLTAENKEKKLTLDIEPFKPVSRSLYLCDNKFHTEELHRMLESDEKFGFIVVDGSGTTYATLCGSVK 167          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: ERF1_TETTH (Eukaryotic peptide chain release factor subunit 1 OS=Tetrahymena thermophila GN=ERF1 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.737e-51
Identity = 96/165 (58.18%), Postives = 123/165 (74.55%), Query Frame = 2
Query:  215 MSDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSGNTE 709
            M +  +  +NIE +KIKKL+  L + RG+GTSM+SLI+PP+ QI+  TK++ DEF  A+NIK RVNRQSV  A+ SA QRLKLY + P NGL+LY G V+ ++GKE K+ IDFEP+KPIN SLY CD+KFH + L  LLE+D  FGFIVMDG G L+  L GNT+
Sbjct:    1 MEEKDQRQRNIEHFKIKKLMTRLRNTRGSGTSMVSLIIPPKKQINDSTKLISDEFSKATNIKDRVNRQSVQDAMVSALQRLKLYQRTPNNGLILYCGKVLNEEGKEIKLLIDFEPYKPINTSLYFCDSKFHVDELGSLLETDPPFGFIVMDGQGALYANLQGNTK 165          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: ERF1_GIALA (Eukaryotic peptide chain release factor subunit 1 OS=Giardia lamblia GN=ERF1 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.167e-49
Identity = 96/170 (56.47%), Postives = 129/170 (75.88%), Query Frame = 2
Query:  191 LQFQPVPTMSDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700
            +   P    S+G++ ++ I IW++K+ I+ LES  G+GTS+ISL++PP +Q+S VT ML +E+GTASNIKSRVN+ +VL+AITSA  RLKLYN++PPNGL +Y G  + +DGK  KV ID+ P+KPI+  +YLCD+KFHTE L ELL +D  FGFI+MDG  TL  TLSG
Sbjct:    1 MSINPDAPQSNGEQ-ERQIAIWQLKRTIEKLESYTGSGTSVISLLIPPGEQLSSVTGMLTNEYGTASNIKSRVNKNAVLSAITSAMSRLKLYNRLPPNGLAVYCGE-IEEDGKNTKVVIDYTPYKPISNFIYLCDSKFHTEHLRELLTNDDTFGFIIMDGKETLMATLSG 168          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: ERF1_DIDNA (Eukaryotic peptide chain release factor subunit 1 OS=Didinium nasutum GN=eRF1 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.236e-49
Identity = 92/159 (57.86%), Postives = 125/159 (78.62%), Query Frame = 2
Query:  230 ETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSGNT 706
            E ++N+E++++K+LI  LES +G+GTSMI+LI+  +DQI+   +ML +E G ASNIKSRV RQ+V  A+TS  ++LKLYNK PPNGLV++ G V  +DG EK + ID EPFKPIN +LY CD+ FHTE + +LLE + +FGFI+MDGNG+LFGTL G+T
Sbjct:    9 EYERNVEMFRLKRLIAKLESMKGSGTSMITLIINFKDQINIHARMLAEEVGKASNIKSRVTRQNVTDALTSTLEKLKLYNKTPPNGLVIFCGLVQQEDGGEKMIKIDLEPFKPINTTLYKCDSVFHTEEVRKLLEDNDKFGFIIMDGNGSLFGTLQGST 167          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: ERF1_OXYTR (Eukaryotic peptide chain release factor subunit 1 OS=Oxytricha trifallax GN=ERF1 PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.835e-48
Identity = 93/169 (55.03%), Postives = 123/169 (72.78%), Query Frame = 2
Query:  206 VPTMSDGQETD-KNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGK-EKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSGNT 706
            V +++ GQ +D K+IE+WK+KKLI  LE  +GNGTSM+SLI+PP+D I++  K+L  E   A NIKSR+ +QSV+ AITS +++LKLY + P NGL LY G +  +DGK EKK+  DFEPF+PIN  LY C  KF TE L  LL  D +FGFI++DGNG L+ TL GN+
Sbjct:    2 VESIAAGQVSDNKHIEMWKVKKLISKLEHCKGNGTSMVSLIIPPKDDINKYGKLLTGEMSAAQNIKSRITKQSVVTAITSTKEKLKLYKQTPTNGLCLYCGVIYMEDGKTEKKINFDFEPFRPINQFLYFCGGKFQTEPLLSLLADDDKFGFIIVDGNGALYATLQGNS 170          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: ERF1_STYMT (Eukaryotic peptide chain release factor subunit 1 OS=Stylonychia mytilus GN=ERF1 PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.972e-48
Identity = 91/169 (53.85%), Postives = 124/169 (73.37%), Query Frame = 2
Query:  206 VPTMSDGQETD-KNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGK-EKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSGNT 706
            V +++ GQ  D K+IE+WKIK+LI  LE+ +GNGTSM+SLI+PP++ I++  K+L  E   A NIKSR+ RQSV+ AITS +++LKLY + P NGL +Y G ++ +DGK EKK+  DFEPF+PIN  +Y C  KF TE L  LL  D +FGFI++DGNG L+ TL GN+
Sbjct:    2 VESIAAGQVGDNKHIEMWKIKRLINKLENCKGNGTSMVSLIIPPKEDINKSGKLLVGELSAAQNIKSRITRQSVITAITSTKEKLKLYRQTPTNGLCIYCGVILMEDGKTEKKINFDFEPFRPINQFMYFCGGKFQTEPLTTLLADDDKFGFIIVDGNGALYATLQGNS 170          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: ERF1_STYLE (Eukaryotic peptide chain release factor subunit 1 OS=Stylonychia lemnae GN=ERF1 PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.972e-48
Identity = 91/169 (53.85%), Postives = 124/169 (73.37%), Query Frame = 2
Query:  206 VPTMSDGQETD-KNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGK-EKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSGNT 706
            V +++ GQ  D K+IE+WKIK+LI  LE+ +GNGTSM+SLI+PP++ I++  K+L  E   A NIKSR+ RQSV+ AITS +++LKLY + P NGL +Y G ++ +DGK EKK+  DFEPF+PIN  +Y C  KF TE L  LL  D +FGFI++DGNG L+ TL GN+
Sbjct:    2 VESIAAGQVGDNKHIEMWKIKRLINKLENCKGNGTSMVSLIIPPKEDINKSGKLLVGELSAAQNIKSRITRQSVITAITSTKEKLKLYRQTPTNGLCIYCGVILMEDGKTEKKINFDFEPFRPINQFMYFCGGKFQTEPLTTLLADDDKFGFIIVDGNGALYATLQGNS 170          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: ERF1_DILMA (Eukaryotic peptide chain release factor subunit 1 OS=Dileptus margaritifer GN=eRF1 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.454e-45
Identity = 88/159 (55.35%), Postives = 119/159 (74.84%), Query Frame = 2
Query:  230 ETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSGNT 706
            E ++++E++++KKLI  L++ +G+GTSMISLI+  +DQI+   KML DE G ASNIKSRV RQ+V  A+TS  ++LKLYNK P NGL++Y G     D  EK   ID EPFKPIN SLY CD+ FHTE + +LLE + +FGF++MDGNG+LFG++ G T
Sbjct:    9 EYERSVEMFRLKKLIHKLDNLKGSGTSMISLIINYKDQINPFMKMLVDEVGKASNIKSRVTRQNVTDALTSTMEKLKLYNKTPNNGLIIYCGLASEGDSGEKMFKIDMEPFKPINTSLYRCDSVFHTEEVKKLLEDNDRFGFLIMDGNGSLFGSVQGAT 167          
The following BLAST results are available for this feature:
BLAST of FC920208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
ERF1_BLEAM4.220e-5359.39Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_BLEMU2.094e-5259.15Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_TRYBB1.039e-5160.63Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_TETTH6.737e-5158.18Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_GIALA2.167e-4956.47Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DIDNA8.236e-4957.86Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_OXYTR1.835e-4855.03Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_STYMT6.972e-4853.85Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_STYLE6.972e-4853.85Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DILMA1.454e-4555.35Eukaryotic peptide chain release factor subunit 1 ... [more]

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Properties
Property NameValue
Genbank descriptionC32005D04EF RVDevelop1 Citrus clementina cDNA clone C32005D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920208 ID=FC920208; Name=FC920208; organism=Citrus clementina; type=EST; length=724bp
TCGCCGGGGAATTAGAGGGAAAACAAGGTTCCCCATTGGAAAACCCTACC
CTGCGGCCAAGGGACGGGATTCTTCTCCTTTAGAGATTTGTCATTGGAGG
TCTTTCTTGAAGGAAGGAGAGTGACAGAAGCCGACTTTTGCTGCTGCGCC
GTCGCCGATTACCTCTCTCATCTAGATTATATCACCGTTTCTGCAGTTTC
AACCAGTACCCACAATGTCAGATGGTCAGGAAACCGATAAGAACATTGAG
ATATGGAAAATCAAAAAATTGATCAAGGCACTGGAATCTGCAAGAGGTAA
TGGAACCAGTATGATATCCCTTATTATGCCTCCCCGTGATCAAATTTCTC
GGGTCACGAAGATGCTTGGTGATGAATTTGGAACTGCTTCAAACATTAAA
AGTAGGGTCAACCGTCAGTCTGTTCTGGCTGCTATTACTTCTGCTCAGCA
GAGGCTGAAGCTATATAACAAGGTTCCTCCCAATGGGTTGGTGCTTTATA
CTGGAACAGTTGTTACTGACGACGGCAAGGAAAAGAAAGTGACAATTGAC
TTTGAGCCTTTCAAGCCTATAAATGCATCGTTGTATCTCTGTGATAACAA
GTTTCACACTGAAGCCTTGAATGAACTCTTAGAATCTGATGNACAATTTG
GGTTTATTGTCATGGATGGAAATGGCACCCTATTTGGCACATTAAGTGGA
AACACAGAGAGGTGCTTCATAGTT
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