FC920208

Overview
NameFC920208
Unique NameFC920208
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_PYRHO (Peptide chain release factor subunit 1 OS=Pyrococcus horikoshii GN=prf1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.350e-25
Identity = 60/156 (38.46%), Postives = 88/156 (56.41%), Query Frame = 2
Query:  233 TDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700
            T  + +++++KK I+ L+  RG GT +ISL +P    +S+V + L +E+ TA NIKS+  R++VL A+  A Q LKLY + P NGL L+ G V   +G          P +P+N  LY CD  F TE L E+L     +G I ++ N    G L G
Sbjct:    5 TRHDAQLYELKKKIEELKKIRGRGTELISLYIPAGYDLSKVMQQLREEYSTAQNIKSKTTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEIEGNTDIRLWAIIPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRG 160          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_PICTO (Peptide chain release factor subunit 1 OS=Picrophilus torridus GN=prf1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.350e-25
Identity = 60/149 (40.27%), Postives = 85/149 (57.05%), Query Frame = 2
Query:  254 WKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700
            ++ KK ++ L+   G GT +ISL +PP  QIS V + L +E+ T+SNIKS+  R++VLAAI S   RLK Y + P  GLV + G + T   + +  T   EP +PI   +Y CD+ FH E L   L+    +G IV+D      G L G
Sbjct:    9 YEFKKALEELKDLHGRGTELISLYIPPDKQISDVVQYLREEYSTSSNIKSKSTRKNVLAAIESIMSRLKYYKQPPETGLVFFVGHIATRGDQTEMYTKIIEPPEPIQTFMYKCDSNFHLEQLESQLKEKDIYGLIVIDRKEATVGFLKG 157          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_METS3 (Peptide chain release factor subunit 1 OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=prf1 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.021e-24
Identity = 59/152 (38.82%), Postives = 86/152 (56.58%), Query Frame = 2
Query:  248 EIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVT-DDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700
            E++K KK +K L   +G GT ++S+ +P   QIS V K + DE G ++NIKS+  R++V +AI    QR++L+   P NGLVL+ G +     G EK  T  FEP +PI    Y C+N+F  E L  ++E    +G  V+D       TL G
Sbjct:    8 ELYKFKKTLKELSEKKGRGTELVSVYIPHDKQISDVGKQMRDELGQSANIKSKQTRKNVQSAIEVIMQRIRLFKAAPENGLVLFVGMIPRGGPGTEKMETYVFEPPEPITTYWYQCNNEFFLEPLEYMIEERETYGLAVIDRKEATIATLRG 159          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_METTH (Peptide chain release factor subunit 1 OS=Methanobacterium thermoautotrophicum GN=prf1 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.169e-24
Identity = 58/152 (38.16%), Postives = 89/152 (58.55%), Query Frame = 2
Query:  248 EIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVT-DDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700
            E+++ K+ ++ L   RG GT ++S+ +PP  QIS V K + +E   ++NIKS+  +++V +AI    QRLKL+ K P  GLV++ G V     G EK  T  FEP +PI   +Y C+++F+ E L E+LE    +G  V+D       TL G
Sbjct:    8 ELFEFKRTLQELSDKRGRGTELVSVYIPPDRQISDVAKHMREELSQSANIKSKQTKKNVQSAIEVIMQRLKLFPKPPEKGLVMFVGMVPRGGPGTEKMETYVFEPPEPIKTYIYHCNSEFYLEPLREMLEEKETYGLAVLDRKEATIATLKG 159          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_ARCFU (Peptide chain release factor subunit 1 OS=Archaeoglobus fulgidus GN=prf1 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.043e-23
Identity = 59/150 (39.33%), Postives = 88/150 (58.67%), Query Frame = 2
Query:  251 IWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700
            +++ K+ ++ LE  +G GT +I+L +PP   I+ V+  L  E   ASNIKS+  R +VLA I +   RLK + K P NG+V+ +G VV  +GKEK +T   EP +P+    Y CD+KF+ + L E+L     +G IV+D      G L G
Sbjct:    6 MYEFKRKLEELEKYKGRGTELITLYIPPDKNIADVSNQLRSELSQASNIKSKQTRTNVLAGIEAILNRLKHFRKPPENGMVIISG-VVNINGKEKHITEIIEPPEPVPLYKYHCDSKFYLDPLKEMLTEKKLYGLIVLDRREATVGLLKG 154          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_METJA (Peptide chain release factor subunit 1 OS=Methanocaldococcus jannaschii GN=prf1 PE=3 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 5.031e-22
Identity = 58/152 (38.16%), Postives = 89/152 (58.55%), Query Frame = 2
Query:  248 EIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVV-TDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700
            +++  KK++K L+S +G GT +ISL +P   +IS V + L +E   ASNIKS+  R++V +AI +  QRLKL  +    G+V++ G V  +  G EK  T   EP +PI   +Y CD++F+ E L E LE    +G I++D N      + G
Sbjct:    8 QLYLFKKMLKELKSKKGKGTELISLYIPAGRRISDVAQHLREEMSQASNIKSKSTRKNVQSAIEAILQRLKLLKEPLEKGVVIFAGMVPRSGPGTEKMETYVIEPPEPIKTYIYRCDSEFYLEPLEEFLEDKDAYGVILVDRNEATIALVKG 159          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_METMA (Peptide chain release factor subunit 1 OS=Methanosarcina mazei GN=prf1 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.582e-22
Identity = 57/151 (37.75%), Postives = 81/151 (53.64%), Query Frame = 2
Query:  248 EIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700
            E ++ KK ++ L   +G  T +ISL +PP  QI  VT  L DE G A+NIKS++ R +V  AI S   RL+  +KVP NG+V +TG V     K    +    P  PI    Y CD+ F+ E L ++L+    +G +V+D      G L G
Sbjct:    8 EKYEFKKKLEGLRDKKGRSTELISLYIPPDKQIFDVTNQLKDEHGQAANIKSKLTRTNVQGAIESLLSRLRYLDKVPENGIVYFTGAVDIGANKTSMESEVIVPPDPITVYKYHCDSSFYLEPLEDMLKDKNTYGLLVLDRREATIGLLVG 158          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_HALWD (Peptide chain release factor subunit 1 OS=Haloquadratum walsbyi (strain DSM 16790) GN=prf1 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.582e-22
Identity = 57/163 (34.97%), Postives = 92/163 (56.44%), Query Frame = 2
Query:  218 SDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPP-NGLVLYTGTVVTDDGKEKKVTIDFE-PFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700
            +D ++   +   ++ +K+I+ L    G+GT ++++ +PP  Q+S V   +  E   ASNIKS+  R +V  A+TS + RL+ Y+  PP NG+VL++G V T  G+   VT   E P +P+ +  Y CD+ F T+ L ++L     FG IV+D      G L G
Sbjct:    3 TDAEDVSNDRRKYEFRKVIEELREYEGSGTQLVTIYIPPDRQVSDVVAHITQEHSEASNIKSKQTRTNVQDALTSIKDRLRYYDTYPPDNGIVLFSGAVSTGGGQTTMVTRSLESPPEPVQSFRYHCDSDFLTDPLEDMLADKGLFGLIVLDRREANVGWLKG 165          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF11_METAC (Peptide chain release factor subunit 1-1 OS=Methanosarcina acetivorans GN=prf11 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.582e-22
Identity = 58/157 (36.94%), Postives = 84/157 (53.50%), Query Frame = 2
Query:  248 EIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSGNTERCF 718
            E ++ KK +++L   +G  T +ISL +P   QI  VT  L DE G A+NIKS++ R +V  AI S   RL+  +KVP NG+V +TG V     K    +    P +PI    Y CD+ F+ E L ++L+    FG +V+D      G L G   + F
Sbjct:    8 EKYEFKKKLESLRDKKGRSTELISLYIPADKQIFDVTNQLKDEHGQAANIKSKLTRTNVQGAIESLLSRLRYLDKVPENGIVYFTGAVDIGANKTSMESEVIIPPEPITVYKYHCDSSFYLEPLEDMLKDKSTFGLLVLDRREATIGLLVGKRIQAF 164          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_HALLT (Peptide chain release factor subunit 1 OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=prf1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.912e-21
Identity = 58/163 (35.58%), Postives = 90/163 (55.21%), Query Frame = 2
Query:  218 SDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPP-NGLVLYTGTVVTDDGKEKKVTIDFE-PFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700
            SD QE   +   ++ +K+I+ L    G+GT ++++ +P   Q+S V   +  E   ASNIKS+  R +V  A+TS + RL+ Y+  PP NG+V+++G +    G+   VT   E P +P+ +  Y CD+ F TE L  +LE    FG IV+D      G L G
Sbjct:    3 SDAQEASDDRRKYEFRKVIEELRDFEGSGTQLVTIYIPEDRQVSDVVAHVTQEHSEASNIKSKQTRTAVQDALTSIKDRLRYYDTFPPENGMVIFSGAIDAGGGQTDMVTRTLESPPQPVESFRYHCDSAFLTEPLEHMLEDSGLFGLIVLDRREANVGWLKG 165          
The following BLAST results are available for this feature:
BLAST of FC920208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RF1_PYRHO6.350e-2538.46Peptide chain release factor subunit 1 OS=Pyrococc... [more]
RF1_PICTO6.350e-2540.27Peptide chain release factor subunit 1 OS=Picrophi... [more]
RF1_METS37.021e-2438.82Peptide chain release factor subunit 1 OS=Methanob... [more]
RF1_METTH9.169e-2438.16Peptide chain release factor subunit 1 OS=Methanob... [more]
RF1_ARCFU2.043e-2339.33Peptide chain release factor subunit 1 OS=Archaeog... [more]
RF1_METJA5.031e-2238.16Peptide chain release factor subunit 1 OS=Methanoc... [more]
RF1_METMA8.582e-2237.75Peptide chain release factor subunit 1 OS=Methanos... [more]
RF1_HALWD8.582e-2234.97Peptide chain release factor subunit 1 OS=Haloquad... [more]
RF11_METAC8.582e-2236.94Peptide chain release factor subunit 1-1 OS=Methan... [more]
RF1_HALLT1.912e-2135.58Peptide chain release factor subunit 1 OS=Halorubr... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32005D04EF RVDevelop1 Citrus clementina cDNA clone C32005D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920208 ID=FC920208; Name=FC920208; organism=Citrus clementina; type=EST; length=724bp
TCGCCGGGGAATTAGAGGGAAAACAAGGTTCCCCATTGGAAAACCCTACC
CTGCGGCCAAGGGACGGGATTCTTCTCCTTTAGAGATTTGTCATTGGAGG
TCTTTCTTGAAGGAAGGAGAGTGACAGAAGCCGACTTTTGCTGCTGCGCC
GTCGCCGATTACCTCTCTCATCTAGATTATATCACCGTTTCTGCAGTTTC
AACCAGTACCCACAATGTCAGATGGTCAGGAAACCGATAAGAACATTGAG
ATATGGAAAATCAAAAAATTGATCAAGGCACTGGAATCTGCAAGAGGTAA
TGGAACCAGTATGATATCCCTTATTATGCCTCCCCGTGATCAAATTTCTC
GGGTCACGAAGATGCTTGGTGATGAATTTGGAACTGCTTCAAACATTAAA
AGTAGGGTCAACCGTCAGTCTGTTCTGGCTGCTATTACTTCTGCTCAGCA
GAGGCTGAAGCTATATAACAAGGTTCCTCCCAATGGGTTGGTGCTTTATA
CTGGAACAGTTGTTACTGACGACGGCAAGGAAAAGAAAGTGACAATTGAC
TTTGAGCCTTTCAAGCCTATAAATGCATCGTTGTATCTCTGTGATAACAA
GTTTCACACTGAAGCCTTGAATGAACTCTTAGAATCTGATGNACAATTTG
GGTTTATTGTCATGGATGGAAATGGCACCCTATTTGGCACATTAAGTGGA
AACACAGAGAGGTGCTTCATAGTT
back to top