FC920208

Overview
NameFC920208
Unique NameFC920208
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14097 contig Ccv1_Contig14097:1..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_AERPE (Peptide chain release factor subunit 1 OS=Aeropyrum pernix GN=prf1 PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.388e-16
Identity = 51/163 (31.29%), Postives = 84/163 (51.53%), Query Frame = 2
Query:  215 MSDGQETDK-NIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700
            MS G+  ++  I   ++ +L+K L+      T ++SL +PP   +S V  +L  E+    NIK +  RQ+V  A+++A  RL++    PPNGLVL+ G    D    K     F P +PI    Y  D +F T+ L +++E +   G I+++ +    G L G
Sbjct:    1 MSQGRLEERLTISKRELARLLKELKKWSAPATVLLSLYIPPGRPLSDVMTLLRQEYSITDNIKLKRTRQAVKRALSAAMDRLQMLTSTPPNGLVLFCG---EDMSTGKFECFMFSPPEPIRVFYYRTDKRFITDFLEDMVEDNNAIGIIIVERDQATIGLLKG 160          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_SULSO (Peptide chain release factor subunit 1 OS=Sulfolobus solfataricus GN=prf1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.956e-14
Identity = 50/149 (33.56%), Postives = 76/149 (51.01%), Query Frame = 2
Query:  257 KIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTG-TVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700
            ++K LIK L+  +   T ++SL +PP   I  V  +L  E+  A NIK +  R +VL+AI +A  RL    K+  NGLVL+ G    T+D K       F P   +    Y  D +FH E L +++E    +G I+++ +    G L G
Sbjct:   12 ELKALIKELKKWKAPATVLLSLYIPPGRPIPDVVNLLRQEYSIAQNIKLKRTRDAVLSAIGAAIDRLNKIPKIDGNGLVLFCGENFDTEDFK----CFMFSPPDKVPLFFYRTDKEFHLEFLEDMVEDTAVYGLIIVERDEATIGLLKG 156          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_PYRAE (Peptide chain release factor subunit 1 OS=Pyrobaculum aerophilum GN=prf1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.123e-13
Identity = 42/148 (28.38%), Postives = 72/148 (48.65%), Query Frame = 2
Query:  257 KIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700
            +++  +  L+  +G  T++I+L +     I  V  +L  E+ TA+NIK +  R  V   +      LK   K P NG+ ++ G  + + G  + V     P +PIN   Y+CD  FHTE L + L +   +G +V++    +   L G
Sbjct:   18 ELRAFVNLLKKFKGYATTLITLYINAERPIPDVVNLLRSEWSTAANIKDKTTRTHVQDTLERIINNLKGEAKAPENGMAVFAGFHMINQGNYEWVYYVVIPPQPINTFKYICDTAFHTELLEDQLHAGVVYGIVVIERGEAVIALLKG 165          
The following BLAST results are available for this feature:
BLAST of FC920208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RF1_AERPE5.388e-1631.29Peptide chain release factor subunit 1 OS=Aeropyru... [more]
RF1_SULSO2.956e-1433.56Peptide chain release factor subunit 1 OS=Sulfolob... [more]
RF1_PYRAE1.123e-1328.38Peptide chain release factor subunit 1 OS=Pyrobacu... [more]

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Properties
Property NameValue
Genbank descriptionC32005D04EF RVDevelop1 Citrus clementina cDNA clone C32005D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920208 ID=FC920208; Name=FC920208; organism=Citrus clementina; type=EST; length=724bp
TCGCCGGGGAATTAGAGGGAAAACAAGGTTCCCCATTGGAAAACCCTACC
CTGCGGCCAAGGGACGGGATTCTTCTCCTTTAGAGATTTGTCATTGGAGG
TCTTTCTTGAAGGAAGGAGAGTGACAGAAGCCGACTTTTGCTGCTGCGCC
GTCGCCGATTACCTCTCTCATCTAGATTATATCACCGTTTCTGCAGTTTC
AACCAGTACCCACAATGTCAGATGGTCAGGAAACCGATAAGAACATTGAG
ATATGGAAAATCAAAAAATTGATCAAGGCACTGGAATCTGCAAGAGGTAA
TGGAACCAGTATGATATCCCTTATTATGCCTCCCCGTGATCAAATTTCTC
GGGTCACGAAGATGCTTGGTGATGAATTTGGAACTGCTTCAAACATTAAA
AGTAGGGTCAACCGTCAGTCTGTTCTGGCTGCTATTACTTCTGCTCAGCA
GAGGCTGAAGCTATATAACAAGGTTCCTCCCAATGGGTTGGTGCTTTATA
CTGGAACAGTTGTTACTGACGACGGCAAGGAAAAGAAAGTGACAATTGAC
TTTGAGCCTTTCAAGCCTATAAATGCATCGTTGTATCTCTGTGATAACAA
GTTTCACACTGAAGCCTTGAATGAACTCTTAGAATCTGATGNACAATTTG
GGTTTATTGTCATGGATGGAAATGGCACCCTATTTGGCACATTAAGTGGA
AACACAGAGAGGTGCTTCATAGTT
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