FC920211

Overview
NameFC920211
Unique NameFC920211
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920211_ssr456 microsatellite FC920211_ssr456:456..467. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14098 contig Ccv1_Contig14098:1..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: TIP21_MAIZE (Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.617e-56
Identity = 109/179 (60.89%), Postives = 138/179 (77.09%), Query Frame = 2
Query:  122 RIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIV 658
            ++A G+ G++    ++KA +AEF + L+FVFAG  S +A+ +LT+GGA  PAGL++ ++AHA ALFV VSV ANISGGH+NPAVTFG  VGGHIT+L  + YW+AQLLG+ VACLLL F T G      A+ +G+S    VVFE+V+TF LVYTVYATA DPKKG+LGTIAPIAIGFIV
Sbjct:    3 KLAFGSVGDSFSATSIKAYVAEFIATLLFVFAGVGSAIAYGQLTNGGALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITILTGVFYWVAQLLGATVACLLLGFVTHGKAIPTHAV-AGISELEGVVFEVVITFALVYTVYATAADPKKGSLGTIAPIAIGFIV 180          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: TIP1_TOBAC (Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 4.464e-56
Identity = 109/179 (60.89%), Postives = 136/179 (75.98%), Query Frame = 2
Query:  122 RIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIV 658
            RIA G+ G++    +LKA +AEF + L+FVFAG  S +A++KLT   A  PAGL++ ++AHAFALFV VS+ ANISGGH+NPAVT G  VGG+IT+L    YWIAQLLGS VACLLLK+ T GL      +++G++    VV EI++TF LVYTVYATA DPKKG+LGTIAPIAIGFIV
Sbjct:    3 RIAFGSIGDSFSVGSLKAYVAEFIATLLFVFAGVGSAIAYNKLTADAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLKYVTNGLAVPTHGVAAGLNGLQGVVMEIIITFALVYTVYATAADPKKGSLGTIAPIAIGFIV 181          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 5.830e-56
Identity = 108/179 (60.34%), Postives = 135/179 (75.42%), Query Frame = 2
Query:  122 RIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIV 658
            +I +G+ G++    +LKA L+EF + L+FVFAG  S +AF+KLT  GA  PAGL++ ++AHAFALFV VS+ ANISGGH+NPAVT G  +GG+ITL+    YWIAQ LGS+VACLLL F T G       +S+G+ +   VV EIV+TF LVYTVYATA DPKKG+LGTIAPIAIGFIV
Sbjct:    3 KIEVGSVGDSFSVSSLKAYLSEFIATLLFVFAGVGSAVAFAKLTSDGALDPAGLVAIAIAHAFALFVGVSIAANISGGHLNPAVTLGLAIGGNITLITGFFYWIAQCLGSIVACLLLVFVTNGKSVPTHGVSAGLGAVEGVVMEIVVTFALVYTVYATAADPKKGSLGTIAPIAIGFIV 181          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: TIP2_TOBAC (Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 7.614e-56
Identity = 108/178 (60.67%), Postives = 136/178 (76.40%), Query Frame = 2
Query:  125 IAIGTPGEASHPDALKAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIV 658
            IA G+ G++    +LKA +AEF + L+FVFAG  S +A++KLT   A  PAGL++ ++AHAFALFV VS+ ANISGGH+NPAVT G  VGG+IT+L    YWIAQLLGS VACLLLK+ T GL      +++G++ +  VV EI++TF LVYTVYATA DPKKG+LGTIAPIAIGFIV
Sbjct:    4 IAFGSIGDSFSVGSLKAYVAEFIATLLFVFAGVGSAIAYNKLTADAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLKYVTNGLAVPTHGVAAGLNGFQGVVMEIIITFALVYTVYATAADPKKGSLGTIAPIAIGFIV 181          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: TIP21_ORYSJ (Probable aquaporin TIP2-1 OS=Oryza sativa subsp. japonica GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.696e-55
Identity = 109/179 (60.89%), Postives = 137/179 (76.54%), Query Frame = 2
Query:  122 RIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIV 658
            ++A G+ G++    ++KA +AEF + L+FVFAG  S +A+ +LT+GGA  PAGL++ ++AHA ALFV VSV ANISGGH+NPAVTFG  VGGHIT+L  + YWIAQLLG+ +ACLLLKF T G       + +G+S    VV EIV+TF LVYTVYATA DPKKG+LGTIAPIAIGFIV
Sbjct:    3 KLAFGSLGDSFSATSVKAYVAEFIATLLFVFAGVGSAIAYGQLTNGGALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITILTGLFYWIAQLLGASIACLLLKFVTHGKAIPTHGV-AGISELEGVVMEIVITFALVYTVYATAADPKKGSLGTIAPIAIGFIV 180          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 6.446e-55
Identity = 100/182 (54.95%), Postives = 138/182 (75.82%), Query Frame = 2
Query:  113 PIYRIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIV 658
            P  R  +G   +A+HPD ++AA++EF +  IFVFA + S ++  KL     STP GL++ SLAHA AL VAV+V  NISGGHVNPA+TFGA +GG ++L+R++ YW+AQLLG+VVA LLL+ +TGG+    FAL+SGV  W+AV+ E  MTFGL+Y  YAT +DPK+G++GTIAP+A+GF++
Sbjct:    8 PGRRFTVGRSEDATHPDTIRAAISEFLATAIFVFAAEGSILSLGKLYQD-MSTPGGLVAVSLAHALALAVAVAVAVNISGGHVNPAITFGALLGGRLSLIRALFYWLAQLLGAVVATLLLRLTTGGMRPPGFALASGVGDWHAVLLEATMTFGLMYAYYATVIDPKRGHVGTIAPLAVGFLL 188          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: TIP31_ARATH (Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 8.418e-55
Identity = 103/180 (57.22%), Postives = 133/180 (73.89%), Query Frame = 2
Query:  134 GTPGEASHPDALKAALAEFFSMLIFVFAGQASGMAFSKL-----TDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIV 658
            G   EA+HPD+++A LAEF S  +FVFA + S ++  KL        G +TP GLI  +LAHAFALF AVS   N+SGGHVNPAVTFGA VGG +T +R+I YWIAQLLG+++ACLLL+ +T G+    F L+SGV + N +V EI++TFGLVY VY+T +DPK+G+LG IAP+AIG IV
Sbjct:   12 GRADEATHPDSIRATLAEFLSTFVFVFAAEGSILSLDKLYWEHAAHAGTNTPGGLILVALAHAFALFAAVSAAINVSGGHVNPAVTFGALVGGRVTAIRAIYYWIAQLLGAILACLLLRLTTNGMRPVGFRLASGVGAVNGLVLEIILTFGLVYVVYSTLIDPKRGSLGIIAPLAIGLIV 191          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.099e-54
Identity = 105/179 (58.66%), Postives = 135/179 (75.42%), Query Frame = 2
Query:  122 RIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIV 658
            +IA G+ G++    ++KA +AEF + L+FVFAG  S +A++KLT   A  PAGL++ ++AHAFALFV VS+ AN+SGGH+NPAVT G  VGG+IT+L  + YWIAQ LGS VACLLLKF T GL      +++G+ +   VV EI++TF LVYTVYATA DPKKG+LG IAPIAIGFIV
Sbjct:    3 KIAFGSIGDSFSVASIKAYVAEFIATLLFVFAGVGSAIAYNKLTSDAALDPAGLVAVAVAHAFALFVGVSMAANVSGGHLNPAVTLGLAVGGNITILTGLFYWIAQCLGSTVACLLLKFVTNGLSVPTHGVAAGMDAIQGVVMEIIITFALVYTVYATAADPKKGSLGVIAPIAIGFIV 181          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.436e-54
Identity = 100/182 (54.95%), Postives = 138/182 (75.82%), Query Frame = 2
Query:  113 PIYRIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIV 658
            P  R  +G   +A+HPD ++AA++EF +  IFVFA + S ++  K+     ST  GL++ +LAHA AL VAV+V  NISGGHVNPAVTFGA VGG ++L+R++LYW+AQLLG+V A LLL+ +TGG+    FAL+SGV  W+AV+ E VMTFGL+Y  YAT +DPK+G++GTIAP+A+GF++
Sbjct:    7 PGRRFTVGRSEDATHPDTIRAAISEFIATAIFVFAAEGSVLSLGKMYHD-MSTAGGLVAVALAHALALAVAVAVAVNISGGHVNPAVTFGALVGGRVSLVRAVLYWVAQLLGAVAATLLLRLATGGMRPPGFALASGVGDWHAVLLEAVMTFGLMYAYYATVIDPKRGHVGTIAPLAVGFLL 187          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: TIP23_MAIZE (Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 1.436e-54
Identity = 109/179 (60.89%), Postives = 137/179 (76.54%), Query Frame = 2
Query:  122 RIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIV 658
            ++A G+  ++    +LKA +AEF + L+FVFAG  S +A+S+LT GGA  PAGL++ ++AHAFALFV VS+ ANISGGH+NPAVTFG  VGGHIT+L  ILYW+AQLLG+ VAC LL++ T G       + SG+S    VV EIV+TF LVYTVYATA DPKKG+LGTIAP+AIGFIV
Sbjct:    3 KLAFGSFRDSLSAASLKAYVAEFIATLLFVFAGVGSAIAYSQLTKGGALDPAGLVAIAIAHAFALFVGVSMAANISGGHLNPAVTFGLAVGGHITILTGILYWVAQLLGASVACFLLQYVTHGQAIPTHGV-SGISEIEGVVMEIVITFALVYTVYATAADPKKGSLGTIAPMAIGFIV 180          
The following BLAST results are available for this feature:
BLAST of FC920211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
TIP21_MAIZE2.617e-5660.89Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1[more]
TIP1_TOBAC4.464e-5660.89Probable aquaporin TIP-type RB7-5A OS=Nicotiana ta... [more]
TIP23_ARATH5.830e-5660.34Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3... [more]
TIP2_TOBAC7.614e-5660.67Probable aquaporin TIP-type RB7-18C OS=Nicotiana t... [more]
TIP21_ORYSJ1.696e-5560.89Probable aquaporin TIP2-1 OS=Oryza sativa subsp. j... [more]
TIP31_ORYSJ6.446e-5554.95Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]
TIP31_ARATH8.418e-5557.22Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1... [more]
TIP_ANTMA1.099e-5458.66Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]
TIP31_MAIZE1.436e-5454.95Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]
TIP23_MAIZE1.436e-5460.89Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC32005D07EF RVDevelop1 Citrus clementina cDNA clone C32005D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920211 ID=FC920211; Name=FC920211; organism=Citrus clementina; type=EST; length=658bp
GACAAACCGCTACGCAATATAATCCGGAGCACAAAACAGAGCCAGCAAGC
TTGTAAGAAGCCTTTGAGCTAAAACAAAATCGTTTTTCTTGACAAAATTT
TCGATAAAAATGCCAATCTACAGAATTGCCATCGGCACGCCGGGAGAGGC
AAGCCATCCTGATGCGTTAAAGGCGGCTCTAGCTGAGTTTTTCTCGATGC
TTATTTTTGTTTTCGCCGGCCAGGCATCCGGGATGGCCTTTAGCAAGCTA
ACGGATGGCGGGGCGTCCACGCCGGCCGGTCTTATATCTGCATCACTGGC
TCATGCATTTGCCCTATTTGTGGCTGTTTCAGTTGGTGCAAATATTTCTG
GGGGTCACGTGAACCCAGCTGTGACATTTGGTGCATTTGTTGGAGGCCAC
ATTACATTGTTGAGGAGCATCCTGTATTGGATTGCACAGTTGCTAGGATC
AGTTGTTGCTTGCTTGCTGCTCAAGTTTTCCACCGGTGGATTGGAAACAT
CGGCATTCGCACTATCATCTGGCGTCTCATCATGGAATGCAGTTGTGTTT
GAGATTGTGATGACCTTTGGCTTGGTCTACACAGTGTATGCAACAGCAGT
GGATCCAAAGAAGGGAAATCTGGGCACTATTGCACCAATTGCAATCGGTT
TCATTGTT
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