FC920219

Overview
NameFC920219
Unique NameFC920219
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB6_ARATH (Tubulin beta-6 chain OS=Arabidopsis thaliana GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.501e-42
Identity = 84/195 (43.08%), Postives = 117/195 (60.00%), Query Frame = 2 
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGD---DAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE + I  GQ G Q+G+  WE+ C EHGI P G+      VG  D   +  N +++E   G++VPRA+ +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V H++                  +Y  +  L F+V+PSP+VS +VVEPYN+ LS H
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRY-----VGNSDLQLERVNVYYNEASCGRYVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVH 190

HSP 2 Score: 25.7942 bits (55), Expect = 1.501e-42
Identity = 12/23 (52.17%), Postives = 17/23 (73.91%), Query Frame = 1 
Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            VH L V + D  ++LDNE++YDI
Sbjct:  189 VHQL-VENADECMVLDNEALYDI 210
[Close]
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB2_SOLTU (Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 3.320e-42
Identity = 83/195 (42.56%), Postives = 117/195 (60.00%), Query Frame = 2 
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGD---DAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE + I  GQ G Q+G+  WE+ C EHG+ P G+     T    D   +  N +F+E   G++VPRAV +DLEP  +D +R+G Y Q+F P+ L+ G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V H++                  +Y  +  L F+V+PSP+VS +VVEPYN+ LS H
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGRYKG--TAAESDLQLERINVYFNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNLVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKVREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVH 193

HSP 2 Score: 25.7942 bits (55), Expect = 3.320e-42
Identity = 12/23 (52.17%), Postives = 17/23 (73.91%), Query Frame = 1 
Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            VH L V + D  ++LDNE++YDI
Sbjct:  192 VHQL-VENADECMVLDNEALYDI 213
[Close]
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB1_SOLTU (Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 3.320e-42
Identity = 83/195 (42.56%), Postives = 117/195 (60.00%), Query Frame = 2 
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGD---DAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE + I  GQ G Q+G+  WE+ C EHG+ P G+     T    D   +  N +F+E   G++VPRAV +DLEP  +D +R+G Y Q+F P+ L+ G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V H++                  +Y  +  L F+V+PSP+VS +VVEPYN+ LS H
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGRYKG--TAAESDLQLERINVYFNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNLVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKVREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVH 193

HSP 2 Score: 25.7942 bits (55), Expect = 3.320e-42
Identity = 12/23 (52.17%), Postives = 17/23 (73.91%), Query Frame = 1 
Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            VH L V + D  ++LDNE++YDI
Sbjct:  192 VHQL-VENADECMVLDNEALYDI 213
[Close]
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB3_GOSHI (Tubulin beta-3 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 4.329e-42
Identity = 83/195 (42.56%), Postives = 116/195 (59.49%), Query Frame = 2 
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGD---DAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE + +  GQ G Q+G+  WE+ C EHGI P G+      +G  D   +  N +++E   G+ VPRAV +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V H++                  +Y  +  L F+V+PSP+VS +VVEPYN+ LS H
Sbjct:    1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRY-----IGSSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVH 190

HSP 2 Score: 25.7942 bits (55), Expect = 4.329e-42
Identity = 12/23 (52.17%), Postives = 17/23 (73.91%), Query Frame = 1 
Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            VH L V + D  ++LDNE++YDI
Sbjct:  189 VHQL-VENADECMVLDNEALYDI 210
[Close]
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB5_WHEAT (Tubulin beta-5 chain OS=Triticum aestivum GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 5.638e-42
Identity = 85/195 (43.59%), Postives = 116/195 (59.49%), Query Frame = 2 
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGD---DAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE + I  GQ G Q+G+  WE+ C EHGI P G+      VG  D   +  N +++E   G+ VPRAV +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V H++                  +Y  +  L F+V+PSP+VS +VVEPYN+ LS H
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRY-----VGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVH 190

HSP 2 Score: 25.7942 bits (55), Expect = 5.638e-42
Identity = 12/23 (52.17%), Postives = 17/23 (73.91%), Query Frame = 1 
Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            VH L V + D  ++LDNE++YDI
Sbjct:  189 VHQL-VENADECMVLDNEALYDI 210
[Close]
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB1_ORYSJ (Tubulin beta-1 chain OS=Oryza sativa subsp. japonica GN=TUBB1 PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 5.638e-42
Identity = 85/195 (43.59%), Postives = 116/195 (59.49%), Query Frame = 2 
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGD---DAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE + I  GQ G Q+G+  WE+ C EHGI P G+      VG  D   +  N +++E   G+ VPRAV +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V H++                  +Y  +  L F+V+PSP+VS +VVEPYN+ LS H
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRY-----VGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVH 190

HSP 2 Score: 25.7942 bits (55), Expect = 5.638e-42
Identity = 12/23 (52.17%), Postives = 17/23 (73.91%), Query Frame = 1 
Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            VH L V + D  ++LDNE++YDI
Sbjct:  189 VHQL-VENADECMVLDNEALYDI 210
[Close]
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB5_MAIZE (Tubulin beta-5 chain OS=Zea mays GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 5.638e-42
Identity = 85/195 (43.59%), Postives = 116/195 (59.49%), Query Frame = 2 
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGD---DAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE + I  GQ G Q+G+  WE+ C EHGI P G+      VG  D   +  N +++E   G+ VPRAV +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V H++                  +Y  +  L F+V+PSP+VS +VVEPYN+ LS H
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRY-----VGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVH 190

HSP 2 Score: 25.7942 bits (55), Expect = 5.638e-42
Identity = 12/23 (52.17%), Postives = 17/23 (73.91%), Query Frame = 1 
Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            VH L V + D  ++LDNE++YDI
Sbjct:  189 VHQL-VENADECMVLDNEALYDI 210
[Close]
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB4_ELEIN (Tubulin beta-4 chain OS=Eleusine indica GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 5.638e-42
Identity = 85/195 (43.59%), Postives = 116/195 (59.49%), Query Frame = 2 
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGD---DAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE + I  GQ G Q+G+  WE+ C EHGI P G+      VG  D   +  N +++E   G+ VPRAV +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V H++                  +Y  +  L F+V+PSP+VS +VVEPYN+ LS H
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRY-----VGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVH 190

HSP 2 Score: 25.7942 bits (55), Expect = 5.638e-42
Identity = 12/23 (52.17%), Postives = 17/23 (73.91%), Query Frame = 1 
Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            VH L V + D  ++LDNE++YDI
Sbjct:  189 VHQL-VENADECMVLDNEALYDI 210
[Close]
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB1_WHEAT (Tubulin beta-1 chain OS=Triticum aestivum GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 5.638e-42
Identity = 85/195 (43.59%), Postives = 116/195 (59.49%), Query Frame = 2 
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGD---DAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE + I  GQ G Q+G+  WE+ C EHGI P G+      VG  D   +  N +++E   G+ VPRAV +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V H++                  +Y  +  L F+V+PSP+VS +VVEPYN+ LS H
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRY-----VGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVH 190

HSP 2 Score: 25.7942 bits (55), Expect = 5.638e-42
Identity = 12/23 (52.17%), Postives = 17/23 (73.91%), Query Frame = 1 
Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            VH L V + D  ++LDNE++YDI
Sbjct:  189 VHQL-VENADECMVLDNEALYDI 210
[Close]
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB2_MAIZE (Tubulin beta-2 chain OS=Zea mays GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 9.573e-42
Identity = 82/192 (42.71%), Postives = 115/192 (59.90%), Query Frame = 2 
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE + I  GQ G Q+G+  WE+ C EHGI P G+ +    V    +  N +++E   G+ VPRAV +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V H++                  +Y  +  + F+V+PSP+VS +VVEPYN+ LS H
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYMGTSDVQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDAVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVH 190

HSP 2 Score: 25.7942 bits (55), Expect = 9.573e-42
Identity = 12/23 (52.17%), Postives = 17/23 (73.91%), Query Frame = 1 
Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            VH L V + D  ++LDNE++YDI
Sbjct:  189 VHQL-VENADECMVLDNEALYDI 210
The following BLAST results are available for this feature:
BLAST of FC920219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 413
Match NameE-valueIdentityDescription
TBB6_ARATH1.501e-4243.08Tubulin beta-6 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB2_SOLTU3.320e-4242.56Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2... [more]
TBB1_SOLTU3.320e-4242.56Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1... [more]
TBB3_GOSHI4.329e-4242.56Tubulin beta-3 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB5_WHEAT5.638e-4243.59Tubulin beta-5 chain OS=Triticum aestivum GN=TUBB5... [more]
TBB1_ORYSJ5.638e-4243.59Tubulin beta-1 chain OS=Oryza sativa subsp. japoni... [more]
TBB5_MAIZE5.638e-4243.59Tubulin beta-5 chain OS=Zea mays GN=TUBB5 PE=2 SV=... [more]
TBB4_ELEIN5.638e-4243.59Tubulin beta-4 chain OS=Eleusine indica GN=TUBB4 P... [more]
TBB1_WHEAT5.638e-4243.59Tubulin beta-1 chain OS=Triticum aestivum GN=TUBB1... [more]
TBB2_MAIZE9.573e-4242.71Tubulin beta-2 chain OS=Zea mays GN=TUBB2 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC32005E05EF RVDevelop1 Citrus clementina cDNA clone C32005E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920219 ID=FC920219; Name=FC920219; organism=Citrus clementina; type=EST; length=688bp
GACTCTTAATCTCGCAATTCCCGACTCAAATCTCTAACAAAATCACACAA
GAATGAGAGAATGCATCTCAATTCACATCGGCCAGGCCGGTATCCAGGTT
GGTAATGCCTGCTGGGAGCTCTATTGCCTCGAACATGGCATTCAGCCTGA
TGGGCAAATGTTAAGTGACAAAACAGTTGGAGGCGGAGATGATGCTTTCA
ACACATTCTTCAGTGAGACCGGCGCCGGAAAGCACGTTCCACGCGCCGTG
TTTTTGGACCTTGAACCAACTGTAATCGATGAAGTGAGGACTGGCGCCTA
CCGTCAGTTGTTTCACCCGGAGCAACTCATTAGCGGCAAAGAAGATGCTG
CTAACAACTTTGCCAGAGGCCACTATACAATTGGGAAAGAGATTGTGGAT
TTGTGCCTTGATAGGATCAGGAAGTTAGCTGATAACTGTACCGGTCTACA
AGGGTTCCTCGTGTTCCACGCGGTTGGTGGAGGAACAGGATCCGGGCTCG
GGTCTTTGCTCCTTGAGAGGCTTTCTGTTGATTACGGCAAGAAATCGAAA
CTGGGATTTACAGTTTACCCTTCACCTCAAGTTTCAACCTCAGTTGTTGA
GCCTTACAACAGCGTTTTGTCCACTCACTCTCTGTTAGACACACTGACGT
TTCTGTGTTGCTTGACAATGAAAGCATCTACGATATTT
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