FC920219
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA1_PELFA (Tubulin alpha-1 chain OS=Pelvetia fastigiata GN=TUBA1 PE=2 SV=1) HSP 1 Score: 319.701 bits (818), Expect = 3.448e-88 Identity = 151/193 (78.24%), Postives = 167/193 (86.53%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRECISIHIGQAGIQVGNACWELYCLEHGIQP+GQM +D T GGGDDAFNTFFSETGAGKHVPRAV++DLEPTV DEVRTG+YRQL+HPEQ+ISGKEDAANN+ARGHYTIGKEIVD+ LDRIRKL+DNCTGLQGFLVFHA VDYG+KSKL F + P+PQV+T+VVEPYNSVLSTH+ Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPNGQMPADNTTGGGDDAFNTFFSETGAGKHVPRAVYVDLEPTVCDEVRTGSYRQLYHPEQIISGKEDAANNYARGHYTIGKEIVDIVLDRIRKLSDNCTGLQGFLVFHATGGGTGSGLGSLLLERLSVDYGRKSKLSFAITPAPQVATAVVEPYNSVLSTHA 193 HSP 2 Score: 27.335 bits (59), Expect = 3.448e-88 Identity = 11/22 (50.00%), Postives = 17/22 (77.27%), Query Frame = 1 Query: 622 HSLSVRHTDVSVLLDNESIYDI 687 H+L + HTD + LDNE++YD+ Sbjct: 192 HAL-LEHTDCTFCLDNEALYDV 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA4A_RAT (Tubulin alpha-4A chain OS=Rattus norvegicus GN=Tuba4a PE=2 SV=1) HSP 1 Score: 316.62 bits (810), Expect = 3.772e-87 Identity = 146/193 (75.65%), Postives = 166/193 (86.01%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+F TFF ETGAGKHVPRAVF+DLEPTVIDE+R G YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+D LDRIRKL+D CTGLQGFLVFH+ VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ Sbjct: 1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHT 193 HSP 2 Score: 26.9498 bits (58), Expect = 3.772e-87 Identity = 9/19 (47.37%), Postives = 16/19 (84.21%), Query Frame = 1 Query: 631 SVRHTDVSVLLDNESIYDI 687 ++ H+D + ++DNE+IYDI Sbjct: 194 TLEHSDCAFMVDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA4A_MOUSE (Tubulin alpha-4A chain OS=Mus musculus GN=Tuba4a PE=1 SV=1) HSP 1 Score: 316.62 bits (810), Expect = 3.772e-87 Identity = 146/193 (75.65%), Postives = 166/193 (86.01%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+F TFF ETGAGKHVPRAVF+DLEPTVIDE+R G YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+D LDRIRKL+D CTGLQGFLVFH+ VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ Sbjct: 1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHT 193 HSP 2 Score: 26.9498 bits (58), Expect = 3.772e-87 Identity = 9/19 (47.37%), Postives = 16/19 (84.21%), Query Frame = 1 Query: 631 SVRHTDVSVLLDNESIYDI 687 ++ H+D + ++DNE+IYDI Sbjct: 194 TLEHSDCAFMVDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA4A_MACFA (Tubulin alpha-4A chain OS=Macaca fascicularis GN=TUBA4A PE=2 SV=1) HSP 1 Score: 316.62 bits (810), Expect = 3.772e-87 Identity = 146/193 (75.65%), Postives = 166/193 (86.01%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+F TFF ETGAGKHVPRAVF+DLEPTVIDE+R G YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+D LDRIRKL+D CTGLQGFLVFH+ VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ Sbjct: 1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHT 193 HSP 2 Score: 26.9498 bits (58), Expect = 3.772e-87 Identity = 9/19 (47.37%), Postives = 16/19 (84.21%), Query Frame = 1 Query: 631 SVRHTDVSVLLDNESIYDI 687 ++ H+D + ++DNE+IYDI Sbjct: 194 TLEHSDCAFMVDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA4A_HUMAN (Tubulin alpha-4A chain OS=Homo sapiens GN=TUBA4A PE=1 SV=1) HSP 1 Score: 316.62 bits (810), Expect = 3.772e-87 Identity = 146/193 (75.65%), Postives = 166/193 (86.01%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+F TFF ETGAGKHVPRAVF+DLEPTVIDE+R G YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+D LDRIRKL+D CTGLQGFLVFH+ VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ Sbjct: 1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHT 193 HSP 2 Score: 26.9498 bits (58), Expect = 3.772e-87 Identity = 9/19 (47.37%), Postives = 16/19 (84.21%), Query Frame = 1 Query: 631 SVRHTDVSVLLDNESIYDI 687 ++ H+D + ++DNE+IYDI Sbjct: 194 TLEHSDCAFMVDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA4A_BOVIN (Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=1 SV=2) HSP 1 Score: 316.62 bits (810), Expect = 3.772e-87 Identity = 146/193 (75.65%), Postives = 166/193 (86.01%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+F TFF ETGAGKHVPRAVF+DLEPTVIDE+R G YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+D LDRIRKL+D CTGLQGFLVFH+ VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ Sbjct: 1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHT 193 HSP 2 Score: 26.9498 bits (58), Expect = 3.772e-87 Identity = 9/19 (47.37%), Postives = 16/19 (84.21%), Query Frame = 1 Query: 631 SVRHTDVSVLLDNESIYDI 687 ++ H+D + ++DNE+IYDI Sbjct: 194 TLEHSDCAFMVDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA_ENTDO (Tubulin alpha chain OS=Enteroctopus dofleini PE=2 SV=1) HSP 1 Score: 313.538 bits (802), Expect = 3.162e-86 Identity = 143/193 (74.09%), Postives = 166/193 (86.01%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRECISIH+GQAG+Q+GNACWELYCLEHGIQP GQM SDK VGG DD+FNTFFSETG+GKHVPRAVF+DLEPTV+DE+RTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKE +DL LDR+RKL+D CTGLQGFL+FH+ VDYGKKSKL F++YP+PQV+T+VVEPYNS+L+TH+ Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPSGQMPSDKAVGGKDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEIRTGLYRQLFHPEQLITGKEDAANNYARGHYTIGKEHIDLVLDRVRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVATAVVEPYNSILTTHT 193 HSP 2 Score: 26.9498 bits (58), Expect = 3.162e-86 Identity = 9/19 (47.37%), Postives = 16/19 (84.21%), Query Frame = 1 Query: 631 SVRHTDVSVLLDNESIYDI 687 ++ H+D + ++DNE+IYDI Sbjct: 194 TLEHSDCAFMVDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA_HAECO (Tubulin alpha chain OS=Haemonchus contortus PE=2 SV=1) HSP 1 Score: 311.227 bits (796), Expect = 7.018e-86 Identity = 145/193 (75.13%), Postives = 167/193 (86.53%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRE ISIHIGQAG+Q+GNACWELYCLEHGIQPDGQM SDK++GG DD+F+TFFSETG+G+HVPRAV +DLEPTVIDE+RTG YR LFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LDRIR+LADNCTGLQGFLVFH+ VDYGKK+KL F+VYP+PQVST+VVEPYNS+L+TH+ Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGCDDSFSTFFSETGSGRHVPRAVMIDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEIIDLTLDRIRRLADNCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKAKLEFSVYPAPQVSTAVVEPYNSILTTHT 193 HSP 2 Score: 28.1054 bits (61), Expect = 7.018e-86 Identity = 10/19 (52.63%), Postives = 16/19 (84.21%), Query Frame = 1 Query: 631 SVRHTDVSVLLDNESIYDI 687 ++ H+D S ++DNE+IYDI Sbjct: 194 TLEHSDCSFMVDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA5_CHICK (Tubulin alpha-5 chain OS=Gallus gallus PE=3 SV=1) HSP 1 Score: 310.457 bits (794), Expect = 2.650e-85 Identity = 143/193 (74.09%), Postives = 162/193 (83.94%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRECIS+H+GQAG+Q+GN CWELYCLEHGIQPDGQM SDKT+GGGDD+F TFF ETGAGKHVPRA+F+DLEPTVIDEVR G YRQLFHPEQLI+GKED ANN+ARGHYTIGKEI+D LDRIRKLAD CTGLQGFL FH+ DYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ Sbjct: 1 MRECISVHVGQAGVQMGNTCWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAIFVDLEPTVIDEVRAGIYRQLFHPEQLITGKEDGANNYARGHYTIGKEIIDQVLDRIRKLADQCTGLQGFLCFHSFGGGTGSGFTSLLMERLSGDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHT 193 HSP 2 Score: 26.9498 bits (58), Expect = 2.650e-85 Identity = 9/19 (47.37%), Postives = 16/19 (84.21%), Query Frame = 1 Query: 631 SVRHTDVSVLLDNESIYDI 687 ++ H+D + ++DNE+IYDI Sbjct: 194 TLEHSDCAFMVDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA1_HOMAM (Tubulin alpha-1 chain OS=Homarus americanus PE=2 SV=1) HSP 1 Score: 309.301 bits (791), Expect = 5.883e-85 Identity = 145/193 (75.13%), Postives = 165/193 (85.49%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRECISIH+GQAG+Q+GNA WELYCLEHGIQPD +M SDKTVG DD+FNTFFSETGAGKHVPRAVF+DLEP+V+DEVR+G YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVD+ LDRIRKLAD CTGLQGFL+FH+ VDYGKKSKL F VYP+PQV+T+VVEPYNS+L+TH+ Sbjct: 1 MRECISIHVGQAGVQMGNAVWELYCLEHGIQPDAKMPSDKTVGVSDDSFNTFFSETGAGKHVPRAVFVDLEPSVVDEVRSGVYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDIVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVATAVVEPYNSILTTHT 193 HSP 2 Score: 26.9498 bits (58), Expect = 5.883e-85 Identity = 9/19 (47.37%), Postives = 16/19 (84.21%), Query Frame = 1 Query: 631 SVRHTDVSVLLDNESIYDI 687 ++ H+D + ++DNE+IYDI Sbjct: 194 TLEHSDCAFMVDNEAIYDI 212 The following BLAST results are available for this feature:
BLAST of FC920219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 413
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC920219 ID=FC920219; Name=FC920219; organism=Citrus clementina; type=EST; length=688bpback to top |